Rose Transcriptome Database

SNPs of unigene RU03729
               4      -     54
RU03729        --> GATCACTACCCTAGCCGCGACCGTGATAGACGGAGGGATTATGACAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- GATCACTACCGTAGCCGCGACCGTGATAGACGGAGGGATTATGACAGAGA
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> GATCACTACCGTAGCCGCGACCGTGATAGACGGAGGGATTATGACAGAGA
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               54     -    104
RU03729        --> CAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCAGGGGTAGGTCTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- CAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCAGGGGTAGGTCTGAGC
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> CAGGGAGGATAGGCATAGGCGCAGGTCTCGTTCCAGGGGTAGGTCTGAGC
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               104    -    154
RU03729        --> ATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGCAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGCAAAAGA
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ATAAATCCAGATCAAGGTCGCGTTCACGCTCACGTTCCAAAAGCAAAAGA
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               154    -    204
RU03729        --> ATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCACTATTACCTGGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCACTATTACCTGGTGC
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCACTATTACCTGGTGC
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               204    -    254
RU03729        --> TGCTGTTCCTGTGACAGGCCAGATTCCTGGAGCTACTCCAACCATTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- TGCTGTTCCTGTGACAGGCCAGATTCCTGGAGCTACTCCAACCATTCCTG
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> TGCTGTT...........................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               254    -    304
RU03729        --> GGATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGCAGTTTGGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- GGATGTTCCCAAACATGTTCCCTTTGGCGACTGGCCAGCAGTTTGGAGCA
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................CCAGCAGTTTGGAGCA
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               304    -    354
RU03729        --> CTTCCAGTTATGCCTGTGCAAGCAATGACTCAACAGGCTACTAGGCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- CTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGC
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> CTTCCAGTTATGCCTGTGCAGGCAATGACTCAACAGGCTACTAGGCATGC
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               354    -    404
RU03729        --> CCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- CTGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGG
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> CCGGAGGGTGTATGTTGGAGGGCTTCCCCCTACAGCAAATGAACAGTCGG
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               404    -    454
RU03729        --> TTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- TTGTTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCT
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> TTGCTACATTTTTCAGCCATGTAATGCATGCTATTGGAGGGAACACTGCT
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               454    -    504
RU03729        --> GGCCCAGGAGATGCTGTTGTCAATGTTTACATCAACCATGAAAAAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- GGCCCAGGAGATGCTGTTGTCAATGTTTACATCAACCATGAAAAAAAAAT
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> GGCCCAGGAGA.......................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               504    -    554
RU03729        --> TTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- TTGCCTTTGTGGAGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
ET0061685      <-- ............AGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
ET0090307      <-- ............AGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
ET0093360      <-- ............AGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
ET0094641      <-- ............AGATGAGATCTGTGGAAGAGGCCAGCAATGCAATGGCT
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ................................GCCAGCAATGCAATGGCT
CT0115791      --> ................................GCCAGCAATGCAATGGCT
CT0116726      --> ................................GCCAGCAATGCAATGGCT
CT0117240      --> ................................GCCAGCAATGCAATGGCT
CT0117305      --> ................................GCCAGCAATGCAATGGCT
CT0113135      --> .........................gaccaagacaaatagacaAATGGCT
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               554    -    604
RU03729        --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0061685      <-- TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0090307      <-- TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0093360      <-- TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0094641      <-- TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
CT0115791      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
CT0116726      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
CT0117240      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
CT0117305      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
CT0113135      --> TTGGATGGGATTATTTTCGAGGGTGCCCCTGTTAAGGTTAGGAGACCTAG
ET0104636      --> ................................................AG
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               604    -    654
RU03729        --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0061685      <-- TGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0090307      <-- TGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0093360      <-- TGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0094641      <-- TGACTACAACCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0115791      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0116726      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0117240      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0117305      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0113135      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
ET0104636      --> TGACTACAATCCATCTCTTGCTGCAACACTTGGTCCAAGCCAGCCCAGTC
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               654    -    704
RU03729        --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
ET0061685      <-- CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGC
ET0090307      <-- CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGC
ET0093360      <-- CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGC
ET0094641      <-- CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGTTCTGCTGGTGGC
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
CT0115791      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
CT0116726      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
CT0117240      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
CT0117305      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTG-C
CT0113135      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
ET0104636      --> CAAATCTGAACTTGGCTAATGTCGGCCTGACACCAGGGTCTGCTGGTGGC
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               704    -    754
RU03729        --> CTTGAGGGACCTGATCGC-ATTTT-GGTGGT-G-TCTACCCTATTACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- CTTGAGGGACCTGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  WaterDS
ET0061685      <-- CTTGAGGGACCTGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  Ethylene
ET0090307      <-- CTTGAGGGACCTGATCGC-ATTTT-GTTGGT-GGTCTACC-TATTACTTT  Ethylene
ET0093360      <-- CTTGAGGGACCTGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  Ethylene
ET0094641      <-- CTTGAGGGACCTGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  Ethylene
ET0111449      <-- ...........TGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  Ethylene
RH47BP9        <-- ..................................................  WaterDS
ET0040746      <-- ..................................................  Ethylene
CT0021725      <-- ..................................................  Control
CT0043580      <-- ..................................................  Control
CT0105997      <-- ..................................................  Control
ET0020629      <-- ..................................................  Ethylene
CT0051711      --> ..................................................  Control
CT0060535      --> ..................................................  Control
CT0113854      --> CTTGAGGGACCTGATCGCTATTTTTTGTGGT-G-TCTACCCTATTACTTT  Control
CT0115791      --> CTTGAGGGACCTGATCGCTATTTT-TGTGGT-G-TCTACC..........  Control
CT0116726      --> CTTGAGGGACCTGATCGCTATTTT-TGTGGT-G-TCTACCCTATTACTTT  Control
CT0117240      --> CTTGAGGGACCTGATCGCTATTTTTTGTGGTGG-TCTACCCTATTACTTT  Control
CT0117305      --> CTTGAGGGACCTGATCGCTATTTT-TGTGGT-G-TCTACCCTATTACTTT  Control
CT0113135      --> CTTGAGGGACCTGATCGCTATTTTt.........................  Control
ET0104636      --> CTTGAGGGACCTGATCGC-ATTTTTGTTGGTGG-TCTACCCTATTACTTT  Ethylene
CT0022179      --> ..................................................  Control
CT0039286      --> ..................................................  Control
CT0071890      --> ..................................................  Control
CT0102318      --> ..................................................  Control
CT0102662      --> ..................................................  Control
CT0104373      --> ..................................................  Control
CT0104963      --> ..................................................  Control
ET0016365      --> ..................................................  Ethylene
CT0101338      --> ..................................................  Control
ET0017657      --> ..................................................  Ethylene

               754    -    804
RU03729        --> ACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCC-TCCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ACAGAAGT..........................................
ET0061685      <-- ACAGAA............................................
ET0090307      <-- ACAGAA............................................
ET0093360      <-- ACAGAA............................................
ET0094641      <-- ACAGAA............................................
ET0111449      <-- ACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCC-TCCGTG
RH47BP9        <-- ........ACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCC-TCCGTG
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ACAGAAGTACAGATCAAGGAGTTGCT........................
CT0115791      --> ..................................................
CT0116726      --> ACAGAAGTACAGATCAAGGAGTTG..........................
CT0117240      --> ACAGAAGTACAGATCAAGGAGTTG..........................
CT0117305      --> ACAGAAGTACAGATCAAGG...............................
CT0113135      --> ..................................................
ET0104636      --> ACAGAAGTACAGATCAAGGAGTTGCTCGAGTCTTTTGGACCCC-TC-GTG
CT0022179      --> ................................TTTTGGACCCC-TCCGTG
CT0039286      --> ................................TTTTGGACCCC-TCCGTG
CT0071890      --> ................................TTTTGGACCCCCTCCGTG
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               804    -    854
RU03729        --> GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
RH47BP9        <-- GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
ET0040746      <-- ..TTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> GTTTTGATCTA.......................................
CT0022179      --> GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0039286      --> GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0071890      --> GTTTTGATCTAGTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0102318      --> ...........GTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0102662      --> ...........GTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0104373      --> ...........GTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0104963      --> ...........GTGAAAGATAGGGAAACAGGAAACTCGAAAGGATATGCC
ET0016365      --> ................AGATAGGGAAACAGGAAACTCGAAAGGATATGCC
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               854    -    904
RU03729        --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
RH47BP9        <-- TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCAGTGCAGCACT
ET0040746      <-- TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0021725      <-- ..............................................CACT
CT0043580      <-- ..............................................CACT
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0039286      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0071890      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0102318      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0102662      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0104373      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0104963      --> TTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
ET0016365      --> CTTTGTGTTTACCAAGATCTTTCAGTTACCGACATAGCCTGTGCAGCACT
CT0101338      --> ..............................................CACT
ET0017657      --> ..................................................

               904    -    954
RU03729        --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
RH47BP9        <-- GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
ET0040746      <-- GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0021725      <-- GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0043580      <-- GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0039286      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0071890      --> GAATGGGGATTAAAAATGGGAGACAAGACCCTCCACTGTCAGGCGTGCTA
CT0102318      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0102662      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0104373      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
CT0104963      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTC-ACTGTCAGGCGTGCTA
ET0016365      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTT-ACGGTCAGGCGTGCTA
CT0101338      --> GAATGGG-ATTAAAA-TGGGAGACAAGACCCTT-ACGGTCAGGCGTGCTA
ET0017657      --> ..................................................

               954    -   1004
RU03729        --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ATCAAGGTGCCAACCAGCCAA.............................
RH47BP9        <-- ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
ET0040746      <-- ATCAAGGTGCCAACCAGCCAAAACactctcttgctcaggttttgg.....
CT0021725      <-- ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0043580      <-- ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0039286      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0071890      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTT........
CT0102318      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0102662      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0104373      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0104963      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
ET0016365      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGTGTTTTGTTGCAT
CT0101338      --> ATCAAGGTGCCAACCAGCCAAAACCTGAGCAAGAGAGCGTTTTGTTGCAT
ET0017657      --> ..................................................

               1004   -   1054
RU03729        --> GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGC
ET0040746      <-- ..................................................
CT0021725      <-- GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGC
CT0043580      <-- GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGC
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> GCACAGCAGCA.......................................
CT0039286      --> GCACAGCAGCA.......................................
CT0071890      --> ..................................................
CT0102318      --> GCACAGCAGCAAATTG..................................
CT0102662      --> GCACAGCAGCAAATTG..................................
CT0104373      --> GCACAGCAGCAAATTG..................................
CT0104963      --> GCACAGCAGCAAATTG..................................
ET0016365      --> GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGT.............
CT0101338      --> GCACAGCAGCAAATTGCATTGCAGAGGTTCCTGTTGTTGCAACAGCCTGC
ET0017657      --> ..................................................

               1054   -   1104
RU03729        --> TTCAGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- TTCAGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGAGGATG
ET0040746      <-- ..................................................
CT0021725      <-- TTCAGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGA.....
CT0043580      <-- TTCAGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTTACAGA.....
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> TTCGGTGGCCACCAAAGTTGTATGCTTAACACAAGTAGTT..........
ET0017657      --> ..................................................

               1104   -   1154
RU03729        --> AGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- AGCTGAAGGATGATCTTGAGTATGAAGACATAGTGGAAGATATGAAGCAA
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1154   -   1204
RU03729        --> GAGGGCGAGAAATTTGGTAAATCTTCAGTCATTGTTACCTGCATTTTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- GAGGGCGAGAAATTTGGTAAATCTTCAGTCATTGTTACCTGCATTTTACT
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1204   -   1254
RU03729        --> TCAGTTTATTGATTGACCGGCAAAGTTTATTGTGGTATTGATTTTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- TCAGTTTATTGATTGACCGGCAAAGTTTATTGTGGTATTGATTTTTTTCT
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1254   -   1304
RU03729        --> TTCTTTTTTGTCATTATCTTTCTGTTTTACAGCCTTTTTTGTAGTCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- TTCTTTTTTGTCATTATCTTTCTGTTTTACAGCCTTTTTTGTAGTCCCAC
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1304   -   1354
RU03729        --> AATGTGCTATAAAGAATCAGGCCTAACATTCAGACACAAGCCTCCCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- AATGTGCTATAAAGAATCAGGCCTAACATTCAGACAGAAGCCTCCCAAAC
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ....TGCTATAAAGAATCAGGCCTAACATTCAGACACAAGCCTCCCAAAC
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1354   -   1404
RU03729        --> CTTCTAACTGATCTTCACCTGAGACTGTAATGATGTCTATATCTAACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- CTTCTAACTGATCTTCACCTGAGACTGTAATGATGTCTATATCTAACATT
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- CTTCTAACTGATTTTCACCTGAGACTGTAATGATGTCTATATCTAACATT
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1404   -   1454
RU03729        --> TATCTGATTTCACTGGTTTGCAGGTTCACTTGTGAGCGTCATCATTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- TATCTGATTTCACTGGTTTGCAGGTTCACTTGTGAGCGTCATCATTCCAC
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- TATCTGATTTCACTGGTTTGCAGGTTCACTTGTGAGCGTCATCATTCCAC
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> .........................gtttcttgGAGCGTCATCATTCCAC

               1454   -   1504
RU03729        --> GTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- GTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTG
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- GTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAA...........
ET0020629      <-- ..................................................
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> GTCCACGACCAGATGGTCAACCCTCACCTGGAGTTGGAAAGGTGTTTTTG

               1504   -   1554
RU03729        --> GAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGTACAGGGATGAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- GAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGT..............
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- ..........................................ATGAATGG
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> GAGTATGCGGATGTTGATGGTTCCACAAAAGCCCGTACAGGGATGAATGG

               1554   -   1604
RU03729        --> CAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- CAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACA
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> CAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTATCCGGAGGACA

               1604   -   1654
RU03729        --> AGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAGCGCCTTTGTATTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- AGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAGCGCCTTTGTATTAAC
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> AGTTTGCCCAGGGTGACTATGACGCTAGTTGCTAGCGCCTTTGTATTAAC

               1654   -   1704
RU03729        --> TAAAGATGATTGTCTGAATTATTTGTTTCTTCGCAGTTATTTGCTGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- TAAAGATGATTGTCTGAATTATTTGTTTCTTCGCAGTTATTTGCTGTAGT
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> TAAAGATGAT........................................

               1704   -   1754
RU03729        --> GGGATCTTTGTAGCCTAGTGTATAACTAGGATGAACATGCAGTTTTGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ..................................................
ET0061685      <-- ..................................................
ET0090307      <-- ..................................................
ET0093360      <-- ..................................................
ET0094641      <-- ..................................................
ET0111449      <-- ..................................................
RH47BP9        <-- ..................................................
ET0040746      <-- ..................................................
CT0021725      <-- ..................................................
CT0043580      <-- ..................................................
CT0105997      <-- ..................................................
ET0020629      <-- GGGATCTTTGTAGCCTAGTGTATAACTAGGATGAACATGCAGTTTTGCAC
CT0051711      --> ..................................................
CT0060535      --> ..................................................
CT0113854      --> ..................................................
CT0115791      --> ..................................................
CT0116726      --> ..................................................
CT0117240      --> ..................................................
CT0117305      --> ..................................................
CT0113135      --> ..................................................
ET0104636      --> ..................................................
CT0022179      --> ..................................................
CT0039286      --> ..................................................
CT0071890      --> ..................................................
CT0102318      --> ..................................................
CT0102662      --> ..................................................
CT0104373      --> ..................................................
CT0104963      --> ..................................................
ET0016365      --> ..................................................
CT0101338      --> ..................................................
ET0017657      --> ..................................................

               1754   -   1804
RU03729        --> ATTTACAAATCAATTTGGCGACGGTTATAAATTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH35AI5        <-- ....................................
ET0061685      <-- ....................................
ET0090307      <-- ....................................
ET0093360      <-- ....................................
ET0094641      <-- ....................................
ET0111449      <-- ....................................
RH47BP9        <-- ....................................
ET0040746      <-- ....................................
CT0021725      <-- ....................................
CT0043580      <-- ....................................
CT0105997      <-- ....................................
ET0020629      <-- ATTTACAAATCAATTTGGCGACGGTTATAAATTTGC
CT0051711      --> ....................................
CT0060535      --> ....................................
CT0113854      --> ....................................
CT0115791      --> ....................................
CT0116726      --> ....................................
CT0117240      --> ....................................
CT0117305      --> ....................................
CT0113135      --> ....................................
ET0104636      --> ....................................
CT0022179      --> ....................................
CT0039286      --> ....................................
CT0071890      --> ....................................
CT0102318      --> ....................................
CT0102662      --> ....................................
CT0104373      --> ....................................
CT0104963      --> ....................................
ET0016365      --> ....................................
CT0101338      --> ....................................
ET0017657      --> ....................................