SNPs of unigene RU03732
               1      -     51
RU03732        --> CTCATTTTTCAGCAGAGC-ACCTCTCTTTTTCTCTCTCTTGCCTCACTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................  Control
ET0079961      <-- ..................................................  Ethylene
ET0103069      <-- ..................................................  Ethylene
ET0104479      <-- ..................................................  Ethylene
ET0034873      <-- ..................................................  Ethylene
ET0062836      <-- ..................................................  Ethylene
ET0055611      <-- ..................................................  Ethylene
ET0098993      <-- ..................................................  Ethylene
ET0073071      <-- ..................................................  Ethylene
CT0068594      <-- ..................................................  Control
ET0040965      <-- ..................................................  Ethylene
ET0073323      <-- ..................................................  Ethylene
ET0122464      <-- ..................................................  Ethylene
ET0045832      <-- ..................................................  Ethylene
CT0017449      <-- ..................................................  Control
CT0055006      <-- ..................................................  Control
ET0078202      <-- ..................................................  Ethylene
ET0047550      <-- ..................................................  Ethylene
CT0127002      <-- ..................................................  Control
ET0017683      <-- ..................................................  Ethylene
CT0032214      <-- ..................................................  Control
CT0030719      <-- ..................................................  Control
ET0000750      <-- ..................................................  Ethylene
CT0024071      <-- ..................................................  Control
ET0002598      <-- ..................................................  Ethylene
CT0139666      <-- ..................................................  Control
CT0068754      <-- ..................................................  Control
CT0074114      <-- ..................................................  Control
ET0141344      <-- ..................................................  Ethylene
ET0028687      <-- ..................................................  Ethylene
ET0141324      <-- ..................................................  Ethylene
CT0088441      <-- ..................................................  Control
CT0078255      <-- ..................................................  Control
ET0137375      --> CTCATTTTTCACCAGAGCCACCTCTCTTTTTCTCTCTCTTGCCTCACTTC  Ethylene
ET0136831      --> ......TTTCACCAGAGCCACCTCTCTTTTTCTCTCTCTTGCCTCACTTC  Ethylene
CT0114124      --> .........accggagcC-ACCTCTCTTTTTCTCTCTCTTGCCTCACTTC  Control
CT0132243      --> .................C-ACCTCTCTTTTTCTCTCTCTTGCCTCACTTC  Control
ET0054246      --> .....................CTCTCTTTT-CTCTCTCTTGCCTCACTTC  Ethylene
ET0127339      --> ..................................................  Ethylene
CT0136671      --> ..................................................  Control
ET0013353      --> ..................................................  Ethylene
ET0017137      --> ..................................................  Ethylene
ET0030459      --> ..................................................  Ethylene
CT0064756      --> ..................................................  Control
CT0103352      --> ..................................................  Control
CT0122334      --> ..................................................  Control
ET0004849      --> ..................................................  Ethylene
CT0007792      --> ..................................................  Control
ET0092686      --> ..................................................  Ethylene
CT0022082      --> ..................................................  Control
CT0038675      --> ..................................................  Control
CT0128748      --> ..................................................  Control
CT0010019      --> ..................................................  Control
ET0066204      --> ..................................................  Ethylene
CT0068434      --> ..................................................  Control
ET0067198      --> ..................................................  Ethylene
ET0122584      --> ..................................................  Ethylene
CT0130585      --> ..................................................  Control
ET0054215      --> ..................................................  Ethylene
CT0039825      --> ..................................................  Control
ET0045840      --> ..................................................  Ethylene
CT0131299      --> ..................................................  Control
CT0017239      --> ..................................................  Control
CT0022490      --> ..................................................  Control
CT0033894      --> ..................................................  Control
CT0038179      --> ..................................................  Control
CT0052459      --> ..................................................  Control
CT0075843      --> ..................................................  Control
CT0135717      --> ..................................................  Control
ET0006290      --> ..................................................  Ethylene
ET0024258      --> ..................................................  Ethylene
CT0118105      --> ..................................................  Control
CT0127008      --> ..................................................  Control

               51     -    101
RU03732        --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ...........CCATACCCGATAACCTAACCAGAGACCAGTACGTGTACC
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
ET0136831      --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
CT0114124      --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
CT0132243      --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
ET0054246      --> AATGGCGTCCTCCATCCCCGATAACCTAACCAGAGACCAGTACGTGTACC
ET0127339      --> .........................agtagtacctagttacgttgtTACC
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               101    -    151
RU03732        --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
ET0136831      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
CT0114124      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
CT0132243      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
ET0054246      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
ET0127339      --> TGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCCAGTTC
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               151    -    201
RU03732        --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTCGA
ET0079961      <-- ...............................................GGA
ET0103069      <-- ..............................................cGGA
ET0104479      <-- ..............................................cGGA
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
ET0136831      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
CT0114124      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
CT0132243      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
ET0054246      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
ET0127339      --> ATGGAGAAGCTCGTCGTGGGGTCCACTCCGGCGTCGGAGCTCACCGTGGA
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               201    -    251
RU03732        --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
ET0079961      <-- GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
ET0103069      <-- GGAGCGCAACCTCCTCTCCGTCGCCTACA-GAACGTGA-TCGGGTCGCTC
ET0104479      <-- GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
ET0034873      <-- .......................CCTACAAGAACGTGA-TCGGGTCGCTC
ET0062836      <-- .......................CCTACAAGAACGTGA-TCGGGTCGCTC
ET0055611      <-- .................................CGTGA-TCGGGTCGCTC
ET0098993      <-- .....................................A-TCGGGTCGCTC
ET0073071      <-- ........................................CGGGTCGCTC
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGC..
ET0136831      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
CT0114124      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
CT0132243      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
ET0054246      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGAGTCGGGTCG...
ET0127339      --> GGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTGA-TCGGGTCGCTC
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               251    -    301
RU03732        --> CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- CGGGCCG...........................................
ET0079961      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0103069      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0104479      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0034873      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0062836      <-- CGGGCCGCCTGGTGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0055611      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0098993      <-- CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
ET0073071      <-- CGGGCCGCCTGGTGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> CGGGCCG...........................................
CT0114124      --> CGGGCCGCCTGG......................................
CT0132243      --> CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCCC
ET0054246      --> ..................................................
ET0127339      --> CGGGCCGCCTGGCGGATCGTGTCGTCGATCGAGCAGAAGGAGGAGGGCC-
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               301    -    351
RU03732        --> GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0103069      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0104479      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0034873      <-- GC-AAGAACGAGGAGCACGTGGTGCTCGTCAAGGAGTACAGATCGAAGGT
ET0062836      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0055611      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0098993      <-- GC-AAGAACGAGGAGCACGTGGTGCTCGTCAAGGAGTACAGATCGAAGGT
ET0073071      <-- GC-AAGAACGAGGAGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
CT0068594      <-- .............AGCACGTGGCGCTCGTCAAGGAGTACAGATCGAAGGT
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> GCAAAGAACGAGGAGCACGTGGCGCTCGTCAAGGA...............
ET0054246      --> ..................................................
ET0127339      --> GC-AAGAACGAGGAGCACGTGGCG..........................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               351    -    401
RU03732        --> CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0103069      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0104479      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0034873      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0062836      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0055611      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0098993      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0073071      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
CT0068594      <-- CGAGGCCGAGCTCTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0040965      <-- ............CTCTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..............CTGAGGTCTGCGCCAGCATTCTGAGGATCCTGGACT
ET0013353      --> ........................................ATCCTGGACT
ET0017137      --> ........................................ATCCTGGACT
ET0030459      --> ........................................ATCCTGGACT
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               401    -    451
RU03732        --> CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTgg...............
ET0103069      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTgg...............
ET0104479      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTgg...............
ET0034873      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0062836      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0055611      <-- CCAATCTGGTGCCGTacggacgtacggacgaagacgaagtacgaaag...
ET0098993      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0073071      <-- CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
CT0068594      <-- CCAATCTGGTGCCGTCGGCGTCGGCGAGCGAGTCGAAGGTGTTCTATTTG
ET0040965      <-- CCAATCTGGTGCCGTCGGTGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0073323      <-- .CAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0122464      <-- .........TGCCGTCGGCGTCGGCGAGCGAGTCGAAGGTGTTCTATTTG
ET0045832      <-- ............CGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
CT0017449      <-- ................................TCGAAGGTGTTCTATTTG
CT0055006      <-- ............................................TATTTG
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0013353      --> CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0017137      --> CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
ET0030459      --> CCAATCTGGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
CT0064756      --> ......TGGTGCCGTCGGCGTCGGCGAGCGAGTCGAAGGTGTTCTATTTG
CT0103352      --> ...ggatcGTGCCGTCGGCGTCGTCGAGCGAGTCGAAGGTGTTCTATTTG
CT0122334      --> ...............................GTCGAAGGTGTTCTATTTG
ET0004849      --> .........................................TTCTATTTG
CT0007792      --> ............................................TATTTG
ET0092686      --> ............................gtaaggttgtttcttattttgt
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               451    -    501
RU03732        --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- AAGATGAAG.........................................
ET0062836      <-- AAGATGAAGGGGGA....................................
ET0055611      <-- ..................................................
ET0098993      <-- AAGATGAAAGGGGgaactaaccaaccgactaac.................
ET0073071      <-- AAGATGAAGGGGGA....................................
CT0068594      <-- AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0040965      <-- AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0073323      <-- AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0122464      <-- AAGATAAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0045832      <-- AAGATGAAGGGGGACGTACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0017449      <-- AAGATGAAGGGGGACGTACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0055006      <-- AAGATGAAGGGGGACGTACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0078202      <-- ......AAGGGGGACGTACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0047550      <-- .......AGGGGGACGTACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0013353      --> AAGATGAAGGGGGAC-TACCACCG..........................
ET0017137      --> AAGATGAAGGGGGAC-TACCACCG..........................
ET0030459      --> AAGATGAAGGGGGAC-TACCACCG..........................
CT0064756      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0103352      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0122334      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0004849      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0007792      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
ET0092686      --> AAGATGAAGGGGGAC-TACCACCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0022082      --> .....................CCGCTACTTGGCGGAGTTCAAGTCGGCCG
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               501    -    551
RU03732        --> AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- AGGAGAGGAAGGCTGCTGCTGAGGgacctaccactgcctctcct......
ET0040965      <-- AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
ET0073323      <-- AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTCTTTACAAGGCTGC
ET0122464      <-- AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
ET0045832      <-- AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0017449      <-- AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
CT0055006      <-- AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
ET0078202      <-- AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
ET0047550      <-- AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0127002      <-- .........AGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
ET0017683      <-- ...............cgGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0032214      <-- ........................ACACTATGCTCTC-TTACAAGGCTGC
CT0030719      <-- .........................CACTATGCTCTC-TTACAAGGCTGC
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
CT0103352      --> AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0122334      --> AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
ET0004849      --> AGGAGAGGAAGGCCGCTGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0007792      --> AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
ET0092686      --> AGGAGAGGAAGGCTGCTGCTGAGGACACCATGCTCTC-CTACAAGGCTGC
CT0022082      --> AGGAGAGGAAGGCTGCGGCTGAGGACACTATGCTCTC-TTACAAGGCTGC
CT0038675      --> .....................AGGACACTATGCTCTC-TTACAAGGCTGC
CT0128748      --> .........................CACTATGCTCTC-TTACAAGGCTGC
CT0010019      --> .............................ATGCTCTC-TTACAAGGCTGC
ET0066204      --> ..................................CTC-CTACAAGGCTGC
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               551    -    601
RU03732        --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- TCAGGATGTTGCT.....................................
ET0073323      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0122464      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0045832      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0017449      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0055006      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0078202      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0047550      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0127002      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCCcgag......
ET0017683      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0032214      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0030719      <-- TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0000750      <-- ..AGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0103352      --> TCAGGATGTTGCTGTTGCGGAT............................
CT0122334      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACT................
ET0004849      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0007792      --> TCAGGATGTT........................................
ET0092686      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0022082      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0038675      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0128748      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0010019      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
ET0066204      --> TCAGGATGTTGCTGTTGCGGATCTGGCACCAACTCACCCC-ATAAG-ATT
CT0068434      --> .............................ctACTCACCCCGATAAGGATT
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               601    -    651
RU03732        --> --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATT........
ET0122464      <-- --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTC.......
ET0045832      <-- --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0017449      <-- --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0055006      <-- --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0078202      <-- --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0047550      <-- --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0127002      <-- ..................................................
ET0017683      <-- --G...............................................
CT0032214      <-- --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
CT0030719      <-- --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
ET0000750      <-- --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
CT0024071      <-- .....................TCAGTGTTCTACTATGAGATTCTCAATCA
ET0002598      <-- ..............................TACTATGAGATTCTCAATCA
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATT........
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
CT0007792      --> ..................................................
ET0092686      --> --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0022082      --> --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0038675      --> --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
CT0128748      --> --GGGTCTAGCTCTGAACTTCTCGGTGTTCTACTATGAGATTCTCAATCA
CT0010019      --> --GGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0066204      --> --GGGTCTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
CT0068434      --> AGGGGTCTGGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0067198      --> ......CTAGCTCTGAACTTCTCAGTGTTCTACTATGAGATTCTCAATCA
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               651    -    701
RU03732        --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- GTCTGACAAAagctt...................................
CT0055006      <-- GTCTGACAAAGCTTGTAGCAT.............................
ET0078202      <-- GTCTGACAAAGCTTGTAGCATGGCCAAACAGGac................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- GTCTGACAAAGCTTGTA.................................
CT0030719      <-- GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
ET0000750      <-- GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0024071      <-- GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
ET0002598      <-- GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0139666      <-- ................AGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> GTCTGACAAAG.......................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> GTCTGACAAAGCTTGTAGCATGGa..........................
CT0007792      --> ..................................................
ET0092686      --> GTC...............................................
CT0022082      --> GTCTGACAAAGCTTG...................................
CT0038675      --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0128748      --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0010019      --> GTCTGACAAAGCTTGTAGCATGGCCAAAgtgtctagctcagcaatggctt
ET0066204      --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0068434      --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
ET0067198      --> GTCTGACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
ET0122584      --> ....GACAAAGCTTGTAGCATGGCCAAACAGGCATTTGAGGAAGCCATTG
CT0130585      --> ........................CAAACAGGCATTTGAGGAAGCCATTG
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               701    -    751
RU03732        --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- CTGAGCTAGACACTTTGGGTGAAGAA........................
ET0000750      <-- CTGAG.............................................
CT0024071      <-- CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
ET0002598      <-- CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATT
CT0139666      <-- CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
CT0068754      <-- .....CTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCA........
CT0128748      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCT....
CT0010019      --> cctcaaatgcctgtttg.................................
ET0066204      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
CT0068434      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
ET0067198      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
ET0122584      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
CT0130585      --> CTGAGCTAGACACTTTGGGTGAAGAATCTTACAAGGACAGCACTCTCATC
ET0054215      --> .......................GAATCTTACAAGGACAGCACTCTCATC
CT0039825      --> ............................................CTCATC
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               751    -    801
RU03732        --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ATGCAACTTTTGAGGGACAACCTCACCCTCTGGA................
ET0002598      <-- ATGC..............................................
CT0139666      <-- ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
CT0068754      <-- ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
CT0074114      <-- ............AGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> A.................................................
CT0068434      --> ATGCAACTTTTGAGGGACA...............................
ET0067198      --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
ET0122584      --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
CT0130585      --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
ET0054215      --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
CT0039825      --> ATGCAACTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
ET0045840      --> ...aactTTTTGAGGGACAACCTCACCCTCTGGACTTCAGATGTGACGGA
CT0131299      --> ...........................CTCTGGACTTCAGATGTGACGGA
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ..................................................
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               801    -    851
RU03732        --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0068754      <-- AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0074114      <-- AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
ET0141344      <-- ...............................................ATG
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> AGGGTTAGATGAACCATAGATAG...........................
ET0122584      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0130585      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
ET0054215      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0039825      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTTACCTGATG
ET0045840      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0131299      --> AGGGTTAGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0017239      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0022490      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0033894      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0038179      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0052459      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0075843      --> ......AGATGAACCATAGATAGCTGCAAGGGTCCTATGCTT-CCTGATG
CT0135717      --> ....................TAGCTGCAAGGGTCCTATGCTT-CCTGATG
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               851    -    901
RU03732        --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGTTTTGTA
CT0068754      <-- GATGAGTTGGGTGTTGAATCAGTTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0074114      <-- GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
ET0141344      <-- GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
ET0028687      <-- .........GGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGTTTTGTA
ET0141324      <-- ...........................TGGAAGCAAGTGTGTGCTTTGTA
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAG.................
CT0130585      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGTTTTGTA
ET0054215      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGtcttt..
CT0039825      --> GATGAGTTGGGTGTTGAATCAGTTAATTGGAAGCAAGTGTGTGCTTTGTA
ET0045840      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0131299      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGTTTTGTA
CT0017239      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0022490      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0033894      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0038179      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0052459      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0075843      --> GAGGAGTTGGGTGTTGAATCAGCTAATTGGAAGCAAGTGTGTGCTTTGTA
CT0135717      --> GATGAGTTGGGTGTTGAATCAGTTAATTGGAAGCAAGTGTGTGCTTTGTA
ET0006290      --> ..................................................
ET0024258      --> ..................................................
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               901    -    951
RU03732        --> TATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- TATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0068754      <-- TATTGCCAGAATTGAAACTGAACTTGTTCATag.................
CT0074114      <-- TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0141344      <-- TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0028687      <-- TATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0141324      <-- TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0088441      <-- ..................................................
CT0078255      <-- ..................................................
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> TATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0054215      --> ..................................................
CT0039825      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGA.................
ET0045840      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0131299      --> TATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0017239      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0022490      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0033894      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0038179      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0052459      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0075843      --> TATT-GCAGAATTGAAACTGAACTTGTTCATGAATTTGTTTAAGTGATGT
CT0135717      --> TATTGCCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0006290      --> .ATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
ET0024258      --> .ATTACCAGAATTGAAACTGAACTTGTTCATGAATT-GTTTAAGTGATGT
CT0118105      --> ..................................................
CT0127008      --> ..................................................

               951    -   1001
RU03732        --> TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-ATT--GGGG-TT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- TAGCAGCt..........................................
CT0068754      <-- ..................................................
CT0074114      <-- TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGG--TT
ET0141344      <-- TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGGG...
ET0028687      <-- TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGG--TT
ET0141324      <-- TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGGG-TT
CT0088441      <-- .......................ctAGCAATTTTAAA-TTT--GGG--TT
CT0078255      <-- ........................ctagcATTTTAAA-TTT--GGG--TT
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> TAGCAGCAAC........................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGGT-TT
CT0131299      --> TAGCAGCAACCA......................................
CT0017239      --> TAGCAGCAACCAGCTGTCTTT.............................
CT0022490      --> TAGCAGCAACCAGCTGTCTTT.............................
CT0033894      --> TAGCAGCAACCAGCTGTCTTT.............................
CT0038179      --> TAGCAGCAACCAGCTGTCTTT.............................
CT0052459      --> TAGCAGCAACCAGCTGTCTTT.............................
CT0075843      --> TAGCAGCAACCAGCTGT.................................
CT0135717      --> TAGCAGCAACCAGCTGTCTTTTTTCAGCAATTTTAAA-TTT--GGG--TT
ET0006290      --> TAGCAGCGACCAGCTGTCTTTTTTCAGCAATTTTTAA-ATT--TGGG-TT
ET0024258      --> TAGCAGCGACCAGCTGTCTTTTTTCAGCAATTTTTAA-ATTTTGGGGTTT
CT0118105      --> ..................TTTTTTCAGCAATTTTAAATTTT--GGGG-TT
CT0127008      --> ...............................................tTT

               1001   -   1051
RU03732        --> T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- T-GGTTT-Aaaaaaaaa.................................
ET0141344      <-- ..................................................
ET0028687      <-- T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
ET0141324      <-- Ttgg..............................................
CT0088441      <-- T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
CT0078255      <-- T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> T-GGTTT-ATtag.....................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
ET0006290      --> TTGGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
ET0024258      --> T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
CT0118105      --> T-GGTTT-ATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC
CT0127008      --> T-GGTTTTATGGAAATGGAATCATAGCATATAAAACTATTGAGGATAATC

               1051   -   1101
RU03732        --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ATGTAGTAGAATAGTATTGTCGTGTGACTC....................
ET0141324      <-- ..................................................
CT0088441      <-- ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
CT0078255      <-- ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
ET0006290      --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
ET0024258      --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
CT0118105      --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG
CT0127008      --> ATGTAGTAGAATAGTATTGTCGTGTGACTCAGAGTGATGCATTTGCTTGG

               1101   -   1151
RU03732        --> CCATAAAGTTTGGAATGATCATGTGGCAATCTTTTTCATTTGATGGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ..................................................
ET0079961      <-- ..................................................
ET0103069      <-- ..................................................
ET0104479      <-- ..................................................
ET0034873      <-- ..................................................
ET0062836      <-- ..................................................
ET0055611      <-- ..................................................
ET0098993      <-- ..................................................
ET0073071      <-- ..................................................
CT0068594      <-- ..................................................
ET0040965      <-- ..................................................
ET0073323      <-- ..................................................
ET0122464      <-- ..................................................
ET0045832      <-- ..................................................
CT0017449      <-- ..................................................
CT0055006      <-- ..................................................
ET0078202      <-- ..................................................
ET0047550      <-- ..................................................
CT0127002      <-- ..................................................
ET0017683      <-- ..................................................
CT0032214      <-- ..................................................
CT0030719      <-- ..................................................
ET0000750      <-- ..................................................
CT0024071      <-- ..................................................
ET0002598      <-- ..................................................
CT0139666      <-- ..................................................
CT0068754      <-- ..................................................
CT0074114      <-- ..................................................
ET0141344      <-- ..................................................
ET0028687      <-- ..................................................
ET0141324      <-- ..................................................
CT0088441      <-- gcagcttggccataaagtttg.............................
CT0078255      <-- CCATAAAGTTTGGAATGATCATGTGGCAATCTTTTTCATTTGATGGATCC
ET0137375      --> ..................................................
ET0136831      --> ..................................................
CT0114124      --> ..................................................
CT0132243      --> ..................................................
ET0054246      --> ..................................................
ET0127339      --> ..................................................
CT0136671      --> ..................................................
ET0013353      --> ..................................................
ET0017137      --> ..................................................
ET0030459      --> ..................................................
CT0064756      --> ..................................................
CT0103352      --> ..................................................
CT0122334      --> ..................................................
ET0004849      --> ..................................................
CT0007792      --> ..................................................
ET0092686      --> ..................................................
CT0022082      --> ..................................................
CT0038675      --> ..................................................
CT0128748      --> ..................................................
CT0010019      --> ..................................................
ET0066204      --> ..................................................
CT0068434      --> ..................................................
ET0067198      --> ..................................................
ET0122584      --> ..................................................
CT0130585      --> ..................................................
ET0054215      --> ..................................................
CT0039825      --> ..................................................
ET0045840      --> ..................................................
CT0131299      --> ..................................................
CT0017239      --> ..................................................
CT0022490      --> ..................................................
CT0033894      --> ..................................................
CT0038179      --> ..................................................
CT0052459      --> ..................................................
CT0075843      --> ..................................................
CT0135717      --> CCATAAAGCTTGGAATGATCA.............................
ET0006290      --> gcagct............................................
ET0024258      --> gcagcttggccataa...................................
CT0118105      --> CC................................................
CT0127008      --> CCATAAAGCTTGG.....................................

               1151   -   1201
RU03732        --> CGAAATTGATATCATCTGAAAAAAGTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0074887      <-- ...............................
ET0079961      <-- ...............................
ET0103069      <-- ...............................
ET0104479      <-- ...............................
ET0034873      <-- ...............................
ET0062836      <-- ...............................
ET0055611      <-- ...............................
ET0098993      <-- ...............................
ET0073071      <-- ...............................
CT0068594      <-- ...............................
ET0040965      <-- ...............................
ET0073323      <-- ...............................
ET0122464      <-- ...............................
ET0045832      <-- ...............................
CT0017449      <-- ...............................
CT0055006      <-- ...............................
ET0078202      <-- ...............................
ET0047550      <-- ...............................
CT0127002      <-- ...............................
ET0017683      <-- ...............................
CT0032214      <-- ...............................
CT0030719      <-- ...............................
ET0000750      <-- ...............................
CT0024071      <-- ...............................
ET0002598      <-- ...............................
CT0139666      <-- ...............................
CT0068754      <-- ...............................
CT0074114      <-- ...............................
ET0141344      <-- ...............................
ET0028687      <-- ...............................
ET0141324      <-- ...............................
CT0088441      <-- ...............................
CT0078255      <-- CGAAATTGATATCATCTGAAAAAAGTTCTTT
ET0137375      --> ...............................
ET0136831      --> ...............................
CT0114124      --> ...............................
CT0132243      --> ...............................
ET0054246      --> ...............................
ET0127339      --> ...............................
CT0136671      --> ...............................
ET0013353      --> ...............................
ET0017137      --> ...............................
ET0030459      --> ...............................
CT0064756      --> ...............................
CT0103352      --> ...............................
CT0122334      --> ...............................
ET0004849      --> ...............................
CT0007792      --> ...............................
ET0092686      --> ...............................
CT0022082      --> ...............................
CT0038675      --> ...............................
CT0128748      --> ...............................
CT0010019      --> ...............................
ET0066204      --> ...............................
CT0068434      --> ...............................
ET0067198      --> ...............................
ET0122584      --> ...............................
CT0130585      --> ...............................
ET0054215      --> ...............................
CT0039825      --> ...............................
ET0045840      --> ...............................
CT0131299      --> ...............................
CT0017239      --> ...............................
CT0022490      --> ...............................
CT0033894      --> ...............................
CT0038179      --> ...............................
CT0052459      --> ...............................
CT0075843      --> ...............................
CT0135717      --> ...............................
ET0006290      --> ...............................
ET0024258      --> ...............................
CT0118105      --> ...............................
CT0127008      --> ...............................