SNPs of unigene RU03736
               1      -     51
RU03736        --> TCACCATCACGGCGGTGGAGCGCAACTTCTTCACCATCGAGAAGCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- TCACCATCACGGCGGTGGAGCGCAACTTCTTCACCATCGAGAAGCTGATC
ET0090868      <-- ............CGGTGGAGCGCAACT-CTTCACCATCGAGAAGCTGATC
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               51     -    101
RU03736        --> AAGAAGCTCGTGAAGAGCCTCACGAAGCGCGAGAGGACTGCCTTGCACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- AAGAAGCTCGTGAAGAGCCTCACGAAGCGCGAGAGGACTGCCTTGCACGA
ET0090868      <-- AAGAAGCTCGTGAAGAGCCTCACGAAGCGCGAGAGGGCTGCCTTGCACGA
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               101    -    151
RU03736        --> CTGCCTGGAGATCATTGACGAGACGCTCGATGAGCTCCACGAGGCGGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- CTGCCTGGAGATCATTGACGAGACGCTCGATGAGCTCCACGAGGCGGTAA
ET0090868      <-- CTGCCTGGAGATCATTGACGAGACGCTCGATGAGCTCCACGAGGCGGTAA
ET0020076      <-- ......................ACGCTCGATGAGCTCCACGAGGCGGTAA
CT0128998      <-- .................................GCTCCACGAGGCGGTAA
CT0130805      <-- .................................GCTCCACGAGGCGGTAA
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               151    -    201
RU03736        --> AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCA....
ET0090868      <-- AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
ET0020076      <-- AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
CT0128998      <-- AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
CT0130805      <-- AGGATCTGTTTCAGTACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ...............ACCCGAGCAACAACAGGACTCTGACTGCGCACGCC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               201    -    251
RU03736        --> GACGATCTCAAGACGTTGATAAGCTCCGCCATTACCAACCAGGAGACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- GACGATCTCAAGACGTTtgtattaagtcttccgtcctattt.........
ET0020076      <-- GACGATCTCAAGACGTTGATAAGCTCCGCCATTACCAACCAGGAGACTTG
CT0128998      <-- GACGATCTCAAGACGTTGATAAGCT.........................
CT0130805      <-- GACGATCTCAAGACGTTGATAAGCT.........................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> GACGATCTCAAGACGTTGATAAGCTCCGCCATTACCAACCAGGAGACTTG
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               251    -    301
RU03736        --> TCTCGACGGGTTTTCTCACGCCGAAGCTGATAAAATAGTTCGGAAATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- TCTCGACGGGTTTTCTCACGCCGAAGCTGATAAAATAGTTCGGAAATCGT
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ...........................................AAATCGT
ET0017061      <-- ...............................................CGT
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> TCTCGACGGGTTTTCTCACGCCGAAGCTGATAAAATAGTTCGGAAATCGT
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               301    -    351
RU03736        --> TGGAGAAGGGTCAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- TGGAGAAGGGTCAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- TGGAGAAGGGTCAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
ET0017061      <-- TGGAGAAGGGTCAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
RH49BO88       <-- ...........CAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> TGGAGAAGGGTCAGAAATATGTAGAAAAGTTGTGTAGCAATGCACTGGCC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               351    -    401
RU03736        --> ATGATTAAAAACATGACTGATAACGACATTGCAAACGAGATGAAAGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ATcaagcag.........................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ATGATTAAAAACATGACTGATAACGACATTGCAAACGAGATGAAAGCCAT
ET0017061      <-- ATGATTAAAAACATGACTGATAACGACATTGCAAACGAGATGAAAGCCAT
RH49BO88       <-- ATGATTAAAAACATGACTGATAACGACATTGCAAACGAGATGAAAGCCAT
CT0023973      <-- ...............................CAAACGAGATGAAAGCCAT
CT0031344      <-- ...............................CAAACGAGATGAAAGCCAT
CT0085887      <-- ................................................AT
CT0096869      <-- ................................................AT
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ATGATTAAAAACATGACTGATAACGACATTGCAAACGAGATGAAAGCCAT
CT0123981      --> ..............................GCAAACGAGATGAAAGCCAT
CT0124548      --> ..............................GCAAACGAGATGAAAGCCAT
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               401    -    451
RU03736        --> GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- GTCGTCGACGACTAA...................................
ET0017061      <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
RH49BO88       <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0023973      <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0031344      <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0085887      <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0096869      <-- GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAGCATTCAAACGGATGGC
CT0123981      --> GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
CT0124548      --> GTCGTCGACGACTAACCGAAAGCTAAAGGAGGAACATTCAAACGGATGGC
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               451    -    501
RU03736        --> CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- CGGAGTGGCTGTCTGCCGCAGATAGAC.......................
RH49BO88       <-- CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0023973      <-- CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0031344      <-- CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0085887      <-- CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0096869      <-- CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0121335      <-- .............................................CTGTC
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0123981      --> CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0124548      --> CGGAGTGGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
ET0066128      --> ......GGCTGTCTGCCGCAGATAGACATCTCTTGCAATCCTCTACTGTC
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> .................................................c
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               501    -    551
RU03736        --> ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0023973      <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGA...........
CT0031344      <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGA...........
CT0085887      <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0096869      <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0121335      <-- ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0067454      <-- ...............CGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0123981      --> ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0124548      --> ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
ET0066128      --> ACACCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0111525      --> ...CCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0112418      --> ...CCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0113061      --> ...CCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0113368      --> ...CCGAATTGTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0114963      --> ...CCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0115442      --> ...CCGAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0112226      --> ..ccgaAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0114421      --> ..ccgtAAT-GTGATCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
CT0110758      --> cgtaattgttgtatTCGTGGCAGCAGACGGAACCGGAGATTACAAGACGG
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               551    -    601
RU03736        --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGtattac.
CT0096869      <-- TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATAC...
CT0121335      <-- TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0067454      <-- TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0043327      <-- ......................ACCATCGAAGAGTAGCACCAGATACGTG
CT0127374      <-- .............................................gCGTG
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0123981      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0124548      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
ET0066128      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0111525      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0112418      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0113061      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0113368      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0114963      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0115442      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0112226      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0114421      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
CT0110758      --> TTTCGGAAGCCGTCGCGGCTGCACCATCGAAGAGTAGCACCAGATACGTG
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               601    -    651
RU03736        --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0067454      <-- ATCAGAATCAAGGCCGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0043327      <-- ATCAGAATCAAGGCCGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0127374      <-- ATCAGAATCAAGGCCGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0092392      <-- .................TGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0115068      <-- .....................TATAGAGAGAATGTGGATGTGCCAAAGGC
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0123981      --> ATCAGAATCAA.......................................
CT0124548      --> ATCAGAATCAA.......................................
ET0066128      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0111525      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0112418      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0113061      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0113368      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0114963      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0115442      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0112226      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0114421      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0110758      --> ATCAGAATCAAGGCGGGTGTGTATAGAGAGAATGTGGATGTGCCAAAGGC
ET0012417      --> ..................GTGTATAGAGAGAATGTGGATGTGCCAAAGGC
CT0070880      --> ....................................GATGTGCCAAAGGC
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               651    -    701
RU03736        --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0067454      <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0043327      <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0127374      <-- CAAGACGAACATAATGTTCTTGGGCGATGaa...................
CT0092392      <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0115068      <-- CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> CAAGACGAACATAATGTTCTTGGGCGATagg...................
CT0111525      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0112418      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0113061      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0113368      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0114963      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0115442      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0112226      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0114421      --> CAAGACGAACATAATGTTCTTGGGCGATGGAAAGGAAAACCACAATTATT
CT0110758      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
ET0012417      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
CT0070880      --> CAAGACGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
RH23Z16        --> .....tGAACATAATGTTCTTGGGCGATGGAA-GGAAAACCACAATTATT
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               701    -    751
RU03736        --> ACCGCCAG--TA-AAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTT..........
CT0067454      <-- ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0043327      <-- ACCGCCAG..........................................
CT0127374      <-- ..................................................
CT0092392      <-- ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAA.......
CT0115068      <-- ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0097928      <-- ....CCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0080455      <-- ........................ATGGGGACACGACCTTCAATTCTGCC
CT0130607      <-- ..............................ACACGACCTTCAATTCTGCC
CT0004472      <-- .............................................CTGCC
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTG..
CT0112418      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTG..
CT0113061      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTG..
CT0113368      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTG..
CT0114963      --> ACCGCCAGGGTA-AAATGTGGTCGATGGGGACACGACCTTCAATTCTGC.
CT0115442      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCT...........
CT0112226      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTG..
CT0114421      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCT...
CT0110758      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGC.
ET0012417      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
CT0070880      --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
RH23Z16        --> ACCGCCAG--TAGAAATGTGGTCGATGGGGACACGACCTTCAATTCTGCC
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               751    -    801
RU03736        --> ACAGTCGCTGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ACAGTCGCgg........................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0097928      <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0080455      <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0130607      <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0004472      <-- ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
ET0062627      <-- ....................................gaAAGTCACCTTCC
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ACAGTCGCTGCGGTTGGTGCGGGATTCTTAGACAAAAGAAGTCACCTTCC
CT0070880      --> ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
RH23Z16        --> ACAGTCGCGGCGGTTGGTGCGGGATTCTTAG-CAAAAGAAGTCACCTTCC
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               801    -    851
RU03736        --> AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0097928      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0080455      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0130607      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0004472      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
ET0062627      <-- AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0120590      <-- ............................CAAGCAGTTGCTCTTCGTGTTG
ET0072358      <-- ...................................TTGCTCTTCGTGTTG
ET0095387      <-- ....................................TGCTCTTCGTGTTG
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> AGAACTCAGCCCGGTCCCTACAAAAaccacca..................
CT0070880      --> AGAACTCAGCC-GGTCCCT-CAAAACACCAAGCAGTTGCTCTTCGTGTTG
RH23Z16        --> AGAACTCAGCC-GGTCCCT-CAAAACATCAAGCAGTTGCTCTTCGTGTTG
ET0010464      --> ................................CAGTTGCTCTTCGTGTTG
ET0016628      --> ................................CAGTTGCTCTTCGTGTTG
ET0055115      --> ................................CAGTTGCTCTTCGTGTTG
ET0028764      --> .............................................TGTTG
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               851    -    901
RU03736        --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGT........
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- GTTCCGATCTCTCGGCCTTtcttaccgtcttgtc................
CT0097928      <-- ..................................................
CT0080455      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTG...........
CT0130607      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
CT0004472      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0062627      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
CT0120590      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0072358      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0095387      <-- GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> GTTCCGATCTCTCGGCCTTC-ACCGCTGCGATGTTAT-GCGTAC......
RH23Z16        --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGT........
ET0010464      --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0016628      --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0055115      --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0028764      --> GTTCCGATCTCTCGGCCTTCTACCGCTGCGATGTTATTGCGTACCAAGAC
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               901    -    951
RU03736        --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
CT0004472      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0062627      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
CT0120590      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0072358      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0095387      <-- TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0016628      --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0055115      --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0028764      --> TCCCTCTACGTCCACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
ET0018534      --> ............CACTCGAACCGTCAGTTCTTCGAGGGCTGCTTTGTGGC
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               951    -   1001
RU03736        --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
CT0004472      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTA.......
ET0062627      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
CT0120590      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTCGTGTTAC......
ET0072358      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0095387      <-- GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
CT0009547      <-- ....acaGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTT........
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0016628      --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0055115      --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0028764      --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0018534      --> GGGTACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
RH40BG28       --> ....ACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
RH57CB8        --> ....ACTGTCGATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
CT0139713      --> ..........GATTTCATCTTCGGCAATGCTGCAGTAGTGTTACAAAACT
ET0129914      --> ........................CAATGCTGCAGTAGTGTTACAAAACT
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1001   -   1051
RU03736        --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- GCGATATCCATGCCCGAAAGCCCAATTC......................
CT0004472      <-- ..................................................
ET0062627      <-- GCGATATCCATGCCCGAAAGCCCA-TTCGGGCCAGAA.............
CT0120590      <-- ..................................................
ET0072358      <-- GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0095387      <-- GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0009547      <-- GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0007328      <-- .........ATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0045763      <-- .............................................TCACA
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0016628      --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0055115      --> GCGATATCCATGCCCGAA-GCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0028764      --> GCGATATCCATGCCCGAAAGCCCAA.........................
ET0018534      --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
RH40BG28       --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
RH57CB8        --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0139713      --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0129914      --> GCGATATCCATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0058079      --> .CGATATC-ATGCC-GAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0018645      --> ........CATGCCCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0011127      --> .............CCGAAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0025528      --> ................AAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
ET0032483      --> ................AAAGCCCAATTCGGGCCAGAAGAACATGCTCACA
CT0106212      --> .......................................caATGCTCACA
ET0023340      --> .........................................ATGCTCACA
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1051   -   1101
RU03736        --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGG..............
ET0095387      <-- GCCCAAGGG-AGAACCGACCCCAACCAGAAac..................
CT0009547      <-- GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0007328      <-- GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0045763      <-- GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> GCCCAAGGG-AGAACCGACCCCAACCAGAA....................
ET0016628      --> GCCCAAGGG-AGAACCGACCCCAACCAGAA....................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACA..................
RH40BG28       --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
RH57CB8        --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0139713      --> GCCCAAGGGGAGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0129914      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0058079      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0018645      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0011127      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0025528      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0032483      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
CT0106212      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0023340      --> GCCCAAGGG-AGAACCGACCCCAACCAGAACACCGGCATTGTAATCCAAA
ET0119690      --> ................................CCGGCATTGTAATCCAAA
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1101   -   1151
RU03736        --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0007328      <-- AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0045763      <-- AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0055580      <-- .....................CTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0055906      <-- .....................CTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
RH57CB8        --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0139713      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0129914      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0058079      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0018645      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0011127      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0025528      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0032483      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0106212      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
ET0023340      --> A.................................................
ET0119690      --> AATCAAGGATTGGTGCCACTTCTGACTTGGAAGCCGAGAAGGGTAGCTTC
CT0056129      --> .................................................C
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1151   -   1201
RU03736        --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- AAAACATATCTTGGGAGGCCATGG..........................
CT0007328      <-- AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATT..
CT0045763      <-- AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
ET0055580      <-- AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
ET0055906      <-- AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
CT0039555      <-- ..................cgATGGAAGGAGTACTCGAGGACTGTGATGAT
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> AAAACATATCTTGGGAGGCCATGGGAGGAGT...................
RH57CB8        --> AAAACATATCTTGGGAGGCCATGGAAGGggt...................
CT0139713      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
ET0129914      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
CT0058079      --> AAAACATATCTTGGGAGGCCATGG..........................
CT0018645      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACT................
CT0011127      --> AAAACATA..........................................
ET0025528      --> AAAACATATCTTGGGAGGCCATcaagca......................
ET0032483      --> AAAACATATCTTGGGAGGCCATcaagca......................
CT0106212      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
ET0023340      --> ..................................................
ET0119690      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
CT0056129      --> AAAACATATCTTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
CT0002530      --> ..........TTGGGAGGCCATGGAAGGAGTACTCGAGGACTGTGATTAT
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1201   -   1251
RU03736        --> GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
ET0055580      <-- GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
ET0055906      <-- GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
CT0039555      <-- GCAATCAGCCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
ET0129914      --> GCAATCAGTCATTAGTG.................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
ET0023340      --> ..................................................
ET0119690      --> GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
CT0056129      --> GCAATCAGTCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
CT0002530      --> GCAATCAGCCATTAGTGATATCATAGACCCTGCTGGGTGGTACGAGTGGA
CT0041611      --> .......................TAGACCCTGCTGGGTGGTACGAGTGGA
ET0073809      --> .........................GACCCTGCTGGGTGGTACGAGTGGA
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1251   -   1301
RU03736        --> GTGGGACTTTTGCCCTAGACACATTGTTCTATGCCGAATATGCTAACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- GTGGGACTTTTGCCCTAGACACATT.........................
ET0055580      <-- GTGGGACTTTTGCCCTCGACACATTGTTCTATGCCGAATATGCTAACACT
ET0055906      <-- GTGGGACTTTTGCCCTCGACACATTGTTCTATGCCGAATATGCTAACACT
CT0039555      <-- GTGGGACTTTTGCCCTAGACACATTGTTCTATGCCGAATATGCTAACACT
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> GTGGGACTTTTGCCCTA.................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> GTGGGACTTTTGCCCTAGACACATTGTTCTATcg................
ET0023340      --> ..................................................
ET0119690      --> GTGGGACTTTTGCCCTCGACACATTGTTCTATGCCGAATATGCTAACACT
CT0056129      --> GTGGGACTTTTGCCCTCGACACATTGTTCTATGCCGAATATGCTAACACT
CT0002530      --> GTGGGACTTTTGCCCTAGACACATTGTTCTATGCCGAATAT.........
CT0041611      --> GTGGGACTTTTGCCCTAGACACATTGTTCTATGCCGAATATGCTAACACT
ET0073809      --> GTGGGACTTTTGCCCTCGACACATTGTTCTATGCCGAATATGCTAACACT
CT0049119      --> .........TTGCCCTAGACACATTGTTCTATGCCGAATATGCTAACACT
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1301   -   1351
RU03736        --> GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- GGAGCTGGTGCTGCAACTACGAAC..........................
ET0055906      <-- GGAGCTGGTGCTGCAACTACGAAC..........................
CT0039555      <-- GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
RH13J59        <-- ...........................................ACAAGGT
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- ..................................................
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> GGAGCTGGTGCT......................................
CT0056129      --> GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
CT0002530      --> ..................................................
CT0041611      --> GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
ET0073809      --> GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
CT0049119      --> GGAGCTGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
CT0024398      --> .....TGGTGCTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
CT0054483      --> ..........CTGCAACTACGAACAGGGTGACATGGAAGGGGTACAAGGT
RH57CA112      --> ...........................................ACAAGGT
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1351   -   1401
RU03736        --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- GATTACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGaaaatt.....
RH13J59        <-- GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0066275      <-- ...........CCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0081296      <-- ...........CCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0122259      <-- ....................CTCAGGCTTTCACACCAGGGAATTTTATTG
CT0058756      <-- ..........................CTTTCACACCAGGGAATTTTATTG
ET0077788      <-- .............................ctACACCAGGGAATTTTATTG
CT0043185      <-- .................................ACCAGGGAATTTTATTG
CT0120302      <-- ..........................................TTTAATTG
CT0123468      <-- ...........................................ttaATTG
CT0025555      <-- ..............................................tTTG
ET0075856      <-- ..................................................
ET0077936      <-- ..................................................
CT0121332      <-- ..................................................
CT0122841      <-- ..................................................
CT0124177      <-- ..................................................
CT0123652      <-- ..................................................
CT0125794      <-- ..................................................
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> GATAACAAGTGCCA....................................
CT0002530      --> ..................................................
CT0041611      --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
ET0073809      --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0049119      --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0024398      --> GATTACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0054483      --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
RH57CA112      --> GATAACAAGTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
ET0147174      --> ........GTGCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
ET0147136      --> ..........GCCACTGAGGCTCAGGCTTTCACACCAGGGAATTTTATTG
CT0010899      --> .......................AGGCTTTCACACCAGGGAATTTTATTG
ET0004962      --> ..........................................ttttatgc
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1401   -   1451
RU03736        --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0066275      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTTGGT
CT0081296      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0122259      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0058756      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
ET0077788      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0043185      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0120302      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTTGGT
CT0123468      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTTGGT
CT0025555      <-- CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
ET0075856      <-- ..........TT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
ET0077936      <-- ............taGGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0121332      <-- ............................................CTAGGT
CT0122841      <-- ............................................CTAGGT
CT0124177      <-- ............................................CTAGGT
CT0123652      <-- .............................................TAGGT
CT0125794      <-- .............................................TAGGT
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTTTACTCTAGGT
ET0073809      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0049119      --> CTGGTGGAAGTT--GGTTGAGTGCTACaataacgaattacaagaattact
CT0024398      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTTGGT
CT0054483      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
RH57CA112      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
ET0147174      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
ET0147136      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0010899      --> CTGGTGGAAGTT--GGTTGAGTGCTACTGGTTTTCCATTT-ACTCTTGGT
ET0004962      --> gTGGTGGAAGTTAGGGTTGAGTGCTACTGGTTTTCCATTT-ACTCTAGGT
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> ..................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1451   -   1501
RU03736        --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0066275      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0081296      <-- CTGTAGAATGTAGATGAGTAGTAATTCCTGTAATTCGTTATTGTAGCTCT
CT0122259      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0058756      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0077788      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0043185      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTA-TTCGTTATTGTAGCTCT
CT0120302      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0123468      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0025555      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0075856      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0077936      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0121332      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0122841      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0124177      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0123652      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0125794      <-- CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0022965      <-- ..................................................
CT0076877      <-- ..................................................
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> CTGTAGA...........................................
ET0073809      --> CTGTAGAATGTAGATGAGTAG.............................
CT0049119      --> act...............................................
CT0024398      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0054483      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
RH57CA112      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0147174      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0147136      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0010899      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0004962      --> CTGTAGAATGTAGATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0001113      --> ............GATGAGTAGTAATTCTTGTAATTCGTTATTGTAGCTCT
CT0132954      --> ..................TAGTAATTCTTGTAATTCGTTATTGTAGCTCT
ET0085594      --> ................................tcctGTTATTGTGGCTCT
CT0030264      --> ..............................................CTCT
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> ..................................................
CT0083144      --> ..................................................

               1501   -   1551
RU03736        --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0066275      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0081296      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0122259      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0058756      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTG............
ET0077788      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0043185      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0120302      <-- GGTGTGGTCGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0123468      <-- GGTGTGGTCGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0025555      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0075856      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0077936      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0121332      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0122841      <-- GGTGTG-TGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0124177      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0123652      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0125794      <-- GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0022965      <-- .........................................TATCAATGA
CT0076877      <-- .........................................TATCAATGA
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAA...
CT0054483      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
RH57CA112      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0147174      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0147136      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0010899      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0004962      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0001113      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0132954      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0085594      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0030264      --> GGTGTGGTGGGGTGAGTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0002268      --> .......tcctGTGATTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0001427      --> ........tcctgtgaTGTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
ET0141294      --> .................GTGTTGTTCCAGCCTTGATTGCAGTATCAATGA
CT0083144      --> ..................................................

               1551   -   1601
RU03736        --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTGGTTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................  Control
ET0090868      <-- ..................................................  Ethylene
ET0020076      <-- ..................................................  Ethylene
CT0128998      <-- ..................................................  Control
CT0130805      <-- ..................................................  Control
CT0010225      <-- ..................................................  Control
ET0017061      <-- ..................................................  Ethylene
RH49BO88       <-- ..................................................  WaterDS
CT0023973      <-- ..................................................  Control
CT0031344      <-- ..................................................  Control
CT0085887      <-- ..................................................  Control
CT0096869      <-- ..................................................  Control
CT0121335      <-- ..................................................  Control
CT0067454      <-- ..................................................  Control
CT0043327      <-- ..................................................  Control
CT0127374      <-- ..................................................  Control
CT0092392      <-- ..................................................  Control
CT0115068      <-- ..................................................  Control
CT0097928      <-- ..................................................  Control
CT0080455      <-- ..................................................  Control
CT0130607      <-- ..................................................  Control
CT0004472      <-- ..................................................  Control
ET0062627      <-- ..................................................  Ethylene
CT0120590      <-- ..................................................  Control
ET0072358      <-- ..................................................  Ethylene
ET0095387      <-- ..................................................  Ethylene
CT0009547      <-- ..................................................  Control
CT0007328      <-- ..................................................  Control
CT0045763      <-- ..................................................  Control
ET0055580      <-- ..................................................  Ethylene
ET0055906      <-- ..................................................  Ethylene
CT0039555      <-- ..................................................  Control
RH13J59        <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTTcg.  WaterDS
CT0066275      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAACAG-CTTG-TTTTTTC  Control
CT0081296      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0122259      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTG-TTTTTTC  Control
CT0058756      <-- ..................................................  Control
ET0077788      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Ethylene
CT0043185      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTcttt  Control
CT0120302      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0123468      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0025555      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
ET0075856      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Ethylene
ET0077936      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Ethylene
CT0121332      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0122841      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTTCT-  Control
CT0124177      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0123652      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTTCT-  Control
CT0125794      <-- AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTTCT-  Control
CT0022965      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
CT0076877      <-- AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTT--GTTTTTC  Control
RH29AE3        --> ..................................................  WaterDS
CT0123981      --> ..................................................  Control
CT0124548      --> ..................................................  Control
ET0066128      --> ..................................................  Ethylene
CT0111525      --> ..................................................  Control
CT0112418      --> ..................................................  Control
CT0113061      --> ..................................................  Control
CT0113368      --> ..................................................  Control
CT0114963      --> ..................................................  Control
CT0115442      --> ..................................................  Control
CT0112226      --> ..................................................  Control
CT0114421      --> ..................................................  Control
CT0110758      --> ..................................................  Control
ET0012417      --> ..................................................  Ethylene
CT0070880      --> ..................................................  Control
RH23Z16        --> ..................................................  WaterDS
ET0010464      --> ..................................................  Ethylene
ET0016628      --> ..................................................  Ethylene
ET0055115      --> ..................................................  Ethylene
ET0028764      --> ..................................................  Ethylene
ET0018534      --> ..................................................  Ethylene
RH40BG28       --> ..................................................  WaterDS
RH57CB8        --> ..................................................  WaterDS
CT0139713      --> ..................................................  Control
ET0129914      --> ..................................................  Ethylene
CT0058079      --> ..................................................  Control
CT0018645      --> ..................................................  Control
CT0011127      --> ..................................................  Control
ET0025528      --> ..................................................  Ethylene
ET0032483      --> ..................................................  Ethylene
CT0106212      --> ..................................................  Control
ET0023340      --> ..................................................  Ethylene
ET0119690      --> ..................................................  Ethylene
CT0056129      --> ..................................................  Control
CT0002530      --> ..................................................  Control
CT0041611      --> ..................................................  Control
ET0073809      --> ..................................................  Ethylene
CT0049119      --> ..................................................  Control
CT0024398      --> ..................................................  Control
CT0054483      --> AGATA.............................................  Control
RH57CA112      --> AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGtttc....  WaterDS
ET0147174      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTGTTTT....  Ethylene
ET0147136      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTGTTTTcttt  Ethylene
CT0010899      --> AGATACTGCTCTCTGTTGGTTAATGAAATAAGAACAGTCTTTGTTTTT-C  Control
ET0004962      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTG--TTTTTC  Ethylene
CT0001113      --> AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTGTTTTcttt  Control
CT0132954      --> AGATACTGCTCTCTGTTGGTTAATGAA-TAAGAGCAG-CTTG--TTTTTC  Control
ET0085594      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTG--TTTTTC  Ethylene
CT0030264      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTTGTTTTT-C  Control
ET0002268      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTTGTTTTTTC  Ethylene
ET0001427      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTTGTTTTT..  Ethylene
ET0141294      --> AGATACTGCTCTCTGTTGGTTCATGAA-TAAGAGCAG-CTTTGTTTTTTC  Ethylene
CT0083144      --> ..............................................TTTT  Control

               1601   -   1651
RU03736        --> TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- TTTTTTGCCAAaaaaaaa................................
CT0081296      <-- TTTTT-GCCAAGGG....................................
CT0122259      <-- TTTTT-GCC.........................................
CT0058756      <-- ..................................................
ET0077788      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAagagt...............
CT0043185      <-- tgccaaaaaaaaa.....................................
CT0120302      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTTAAGAGTGCTTAAAGTGCCC...
CT0123468      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTTAAGAGTGCTTAAAagtgaccc.
CT0025555      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
ET0075856      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
ET0077936      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0121332      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0122841      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0124177      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0123652      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0125794      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0022965      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0076877      <-- TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> t.................................................
CT0010899      --> TTTTg.............................................
ET0004962      --> TTTTT-Gaccaaaaaaaaa...............................
CT0001113      --> t.................................................
CT0132954      --> TTTT--GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGT.......
ET0085594      --> TTTTT-GCCAAGGGAATAAGCTTaaagttt....................
CT0030264      --> TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAagtgaaacc
ET0002268      --> TTTTT-Gtccaa......................................
ET0001427      --> ..................................................
ET0141294      --> TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA
CT0083144      --> TTTTT-GCCAAGGGAATAAGCTTGTTTAAAGAGTGCTTAAAGTGCCCAAA

               1651   -   1701
RU03736        --> TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- ..................................................
ET0090868      <-- ..................................................
ET0020076      <-- ..................................................
CT0128998      <-- ..................................................
CT0130805      <-- ..................................................
CT0010225      <-- ..................................................
ET0017061      <-- ..................................................
RH49BO88       <-- ..................................................
CT0023973      <-- ..................................................
CT0031344      <-- ..................................................
CT0085887      <-- ..................................................
CT0096869      <-- ..................................................
CT0121335      <-- ..................................................
CT0067454      <-- ..................................................
CT0043327      <-- ..................................................
CT0127374      <-- ..................................................
CT0092392      <-- ..................................................
CT0115068      <-- ..................................................
CT0097928      <-- ..................................................
CT0080455      <-- ..................................................
CT0130607      <-- ..................................................
CT0004472      <-- ..................................................
ET0062627      <-- ..................................................
CT0120590      <-- ..................................................
ET0072358      <-- ..................................................
ET0095387      <-- ..................................................
CT0009547      <-- ..................................................
CT0007328      <-- ..................................................
CT0045763      <-- ..................................................
ET0055580      <-- ..................................................
ET0055906      <-- ..................................................
CT0039555      <-- ..................................................
RH13J59        <-- ..................................................
CT0066275      <-- ..................................................
CT0081296      <-- ..................................................
CT0122259      <-- ..................................................
CT0058756      <-- ..................................................
ET0077788      <-- ..................................................
CT0043185      <-- ..................................................
CT0120302      <-- ..................................................
CT0123468      <-- ..................................................
CT0025555      <-- aaaaa.............................................
ET0075856      <-- TTAAAGGCTTTCACT...................................
ET0077936      <-- TTAAAGGCTTTCACT...................................
CT0121332      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAa
CT0122841      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAa
CT0124177      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAa
CT0123652      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAa
CT0125794      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAa
CT0022965      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAT
CT0076877      <-- TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGACTAAAT
RH29AE3        --> ..................................................
CT0123981      --> ..................................................
CT0124548      --> ..................................................
ET0066128      --> ..................................................
CT0111525      --> ..................................................
CT0112418      --> ..................................................
CT0113061      --> ..................................................
CT0113368      --> ..................................................
CT0114963      --> ..................................................
CT0115442      --> ..................................................
CT0112226      --> ..................................................
CT0114421      --> ..................................................
CT0110758      --> ..................................................
ET0012417      --> ..................................................
CT0070880      --> ..................................................
RH23Z16        --> ..................................................
ET0010464      --> ..................................................
ET0016628      --> ..................................................
ET0055115      --> ..................................................
ET0028764      --> ..................................................
ET0018534      --> ..................................................
RH40BG28       --> ..................................................
RH57CB8        --> ..................................................
CT0139713      --> ..................................................
ET0129914      --> ..................................................
CT0058079      --> ..................................................
CT0018645      --> ..................................................
CT0011127      --> ..................................................
ET0025528      --> ..................................................
ET0032483      --> ..................................................
CT0106212      --> ..................................................
ET0023340      --> ..................................................
ET0119690      --> ..................................................
CT0056129      --> ..................................................
CT0002530      --> ..................................................
CT0041611      --> ..................................................
ET0073809      --> ..................................................
CT0049119      --> ..................................................
CT0024398      --> ..................................................
CT0054483      --> ..................................................
RH57CA112      --> ..................................................
ET0147174      --> ..................................................
ET0147136      --> ..................................................
CT0010899      --> ..................................................
ET0004962      --> ..................................................
CT0001113      --> ..................................................
CT0132954      --> ..................................................
ET0085594      --> ..................................................
CT0030264      --> c.................................................
ET0002268      --> ..................................................
ET0001427      --> ..................................................
ET0141294      --> TTAAAGGCTTTCAaact.................................
CT0083144      --> TTAAAGGCTTTCACTAATCAAAAGTATGATGGAGTAGTGTTTGAact...

               1701   -   1751
RU03736        --> TGTATTCCTGGCCTCAACTATATTGGAAGAAGTCTCAACTAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096975      <-- .................................................
ET0090868      <-- .................................................
ET0020076      <-- .................................................
CT0128998      <-- .................................................
CT0130805      <-- .................................................
CT0010225      <-- .................................................
ET0017061      <-- .................................................
RH49BO88       <-- .................................................
CT0023973      <-- .................................................
CT0031344      <-- .................................................
CT0085887      <-- .................................................
CT0096869      <-- .................................................
CT0121335      <-- .................................................
CT0067454      <-- .................................................
CT0043327      <-- .................................................
CT0127374      <-- .................................................
CT0092392      <-- .................................................
CT0115068      <-- .................................................
CT0097928      <-- .................................................
CT0080455      <-- .................................................
CT0130607      <-- .................................................
CT0004472      <-- .................................................
ET0062627      <-- .................................................
CT0120590      <-- .................................................
ET0072358      <-- .................................................
ET0095387      <-- .................................................
CT0009547      <-- .................................................
CT0007328      <-- .................................................
CT0045763      <-- .................................................
ET0055580      <-- .................................................
ET0055906      <-- .................................................
CT0039555      <-- .................................................
RH13J59        <-- .................................................
CT0066275      <-- .................................................
CT0081296      <-- .................................................
CT0122259      <-- .................................................
CT0058756      <-- .................................................
ET0077788      <-- .................................................
CT0043185      <-- .................................................
CT0120302      <-- .................................................
CT0123468      <-- .................................................
CT0025555      <-- .................................................
ET0075856      <-- .................................................
ET0077936      <-- .................................................
CT0121332      <-- aaa..............................................
CT0122841      <-- aaa..............................................
CT0124177      <-- aaa..............................................
CT0123652      <-- aaa..............................................
CT0125794      <-- aaa..............................................
CT0022965      <-- TGTATTCCTGGCCTCAACTATATTGGAAGAAGTCTCAACTAAAAAAAAA
CT0076877      <-- TGTATTCCTGGCCTCAACTATATTGGAAGAAGTCTCAACTAAAAAAAAA
RH29AE3        --> .................................................
CT0123981      --> .................................................
CT0124548      --> .................................................
ET0066128      --> .................................................
CT0111525      --> .................................................
CT0112418      --> .................................................
CT0113061      --> .................................................
CT0113368      --> .................................................
CT0114963      --> .................................................
CT0115442      --> .................................................
CT0112226      --> .................................................
CT0114421      --> .................................................
CT0110758      --> .................................................
ET0012417      --> .................................................
CT0070880      --> .................................................
RH23Z16        --> .................................................
ET0010464      --> .................................................
ET0016628      --> .................................................
ET0055115      --> .................................................
ET0028764      --> .................................................
ET0018534      --> .................................................
RH40BG28       --> .................................................
RH57CB8        --> .................................................
CT0139713      --> .................................................
ET0129914      --> .................................................
CT0058079      --> .................................................
CT0018645      --> .................................................
CT0011127      --> .................................................
ET0025528      --> .................................................
ET0032483      --> .................................................
CT0106212      --> .................................................
ET0023340      --> .................................................
ET0119690      --> .................................................
CT0056129      --> .................................................
CT0002530      --> .................................................
CT0041611      --> .................................................
ET0073809      --> .................................................
CT0049119      --> .................................................
CT0024398      --> .................................................
CT0054483      --> .................................................
RH57CA112      --> .................................................
ET0147174      --> .................................................
ET0147136      --> .................................................
CT0010899      --> .................................................
ET0004962      --> .................................................
CT0001113      --> .................................................
CT0132954      --> .................................................
ET0085594      --> .................................................
CT0030264      --> .................................................
ET0002268      --> .................................................
ET0001427      --> .................................................
ET0141294      --> .................................................
CT0083144      --> .................................................