SNPs of unigene RU04182
               1      -     51
RU04182        --> ACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> ACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATT
CT0045833      --> .........................GATTAAGCAAGTCGATGTGGTGATT
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               51     -    101
RU04182        --> TCGACGGTGGGTCACGGGCAGTTGGCTGATCAAGGCAAGATCATCGCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> TCGACGGTGGGTCACGGGCAGTTGGCTGATCAAGGCAAGATCATCGCCGC
CT0045833      --> TCGACGGTGGGTCACGGGCAGTTGGCTGATCAAGGCAAGATCATCGCCGC
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               101    -    151
RU04182        --> CATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> CATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAA
CT0045833      --> CATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAA
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               151    -    201
RU04182        --> ACGACGTGGATCGAGTCCACGCCGTGGAGCCAGCAAAGACGGCGTTCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> ACGACGTGGATCGAGTCCACGCCGTGGAGCCAGCAAAGACGGCGTTCGCT
CT0045833      --> ACGACGTGGATCGAGTCCACG.............................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               201    -    251
RU04182        --> ACCAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> ACCAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTTCAC
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               251    -    301
RU04182        --> TTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> TTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACC
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               301    -    351
RU04182        --> AGCCCGGAGCTACTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> AGCCCGGAGCTACTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGAT
CT0045833      --> ..................................................
CT0079395      --> ............CTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGCGAT
ET0064802      --> .......................................TTTTGGGTGAT
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               351    -    401
RU04182        --> GGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACTTATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- .............CAATCTTTAACAAGGAAGAGGATATTGGTACTTATAC
CT0082270      <-- ..................TTTAACAAGGAAGAGGATATTGGTACTTATAC
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> GGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGT........
CT0045833      --> ..................................................
CT0079395      --> GGCAACCCCAAAGCGATCTTTAACAAGGAAGAGGATATTGGTACCTATAC
ET0064802      --> GGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACTTATAC
RH55BW27       --> ..........................................ACTTATAC
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               401    -    451
RU04182        --> CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
CT0082270      <-- CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
RH09E179       <-- .................................................C
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- ..................................................
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
ET0064802      --> CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
RH55BW27       --> CATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCC
CT0101557      --> ................GACCCAAGAACATTGAACAAGATCCTCTACATCC
CT0013613      --> ....................................GATCCTCTACATCC
RH28AD72       --> .................................................C
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               451    -    501
RU04182        --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
CT0082270      <-- GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
RH09E179       <-- GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
ET0004137      <-- ..........................................TTTGGG-A
ET0008831      <-- ..........................................TTTGGG-A
ET0026781      <-- ..........................................TTTGGG-A
ET0032551      <-- ..........................................TTTGGG-A
ET0034257      <-- ..........................................TTTGGG-A
ET0010959      <-- ...........................................TTGGG-A
ET0040165      <-- ..................................................
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> GGCCACCTGCCAACACCTTCTCCTTCAACG....................
ET0064802      --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
RH55BW27       --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
CT0101557      --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
CT0013613      --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
RH28AD72       --> GGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGG-A
ET0137228      --> .........................CAACGAACTTGTGGCTCTTTGGG-A
ET0138863      --> .........................CAACGAACTTGTGGCTCTTTGGGGA
ET0140803      --> .........................CAACGAACTTGTGGCTCTTTGGG-A
ET0139357      --> ........................caAACGAACTTGTGGCTCTTTGGG-A
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               501    -    551
RU04182        --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- GAA...............................................
CT0082270      <-- GAAGAAGATTGG......................................
RH09E179       <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0004137      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0008831      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0026781      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0032551      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0034257      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0010959      <-- GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0040165      <-- ..................................................
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
RH55BW27       --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
CT0101557      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
CT0013613      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
RH28AD72       --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0137228      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0138863      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0140803      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
ET0139357      --> GAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAAC
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               551    -    601
RU04182        --> TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................  Control
CT0082270      <-- ..................................................  Control
RH09E179       <-- TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  WaterDS
ET0004137      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0008831      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0026781      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0032551      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0034257      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0010959      <-- TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0040165      <-- ..................................................  Ethylene
RH25AC116      --> ..................................................  WaterDS
CT0045833      --> ..................................................  Control
CT0079395      --> ..................................................  Control
ET0064802      --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATA......  Ethylene
RH55BW27       --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  WaterDS
CT0101557      --> TACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTG...  Control
CT0013613      --> TACTCAAAAACATTCAAGAGGCTG..........................  Control
RH28AD72       --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  WaterDS
ET0137228      --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0138863      --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0140803      --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
ET0139357      --> TAATCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCA  Ethylene
CT0032089      --> ..................................................  Control
CT0102495      --> ..................................................  Control

               601    -    651
RU04182        --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
ET0004137      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0008831      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0026781      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0032551      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0034257      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0010959      <-- ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGA
ET0040165      <-- ..................tTGAAAGGAGACCACACTAACTTTGAGATCGA
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
ET0137228      --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
ET0138863      --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
ET0140803      --> ATCGGTCACTCAGTTTTTG-GAAAGGAGACCACACTAACTTTGAGATCGA
ET0139357      --> ATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGA
CT0032089      --> ..................................................
CT0102495      --> ..................................................

               651    -    701
RU04182        --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
ET0004137      <-- GCCCTCATTT........................................
ET0008831      <-- GCCCTCATTT........................................
ET0026781      <-- GCCCTCATTT........................................
ET0032551      <-- GCCCTCATTT........................................
ET0034257      <-- GCCCTCATTT........................................
ET0010959      <-- GCCCTCATTT........................................
ET0040165      <-- GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
ET0137228      --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
ET0138863      --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
ET0140803      --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTT...................
ET0139357      --> GCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACA
CT0032089      --> ........................................GTCAAATACA
CT0102495      --> ..................................................

               701    -    751
RU04182        --> CTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGAAGCTAGAACCTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- CTACTGTGGATGAGT...................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- CTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGAAGCTAGAACCTTATT
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> CTACTGTGGATGAGT...................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> CTACTGTGGATGAGT...................................
ET0137228      --> CTACTGTGGATGAGTACCTCT.............................
ET0138863      --> CTACTGTGGATGAGTACCTCT.............................
ET0140803      --> ..................................................
ET0139357      --> CTACTGTGGATGAGTACCTCT.............................
CT0032089      --> CTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGAAGCTAGAACCTTATT
CT0102495      --> .................................................g

               751    -    801
RU04182        --> CTCTATGTATGCAAATAATTGAAATAAATAGGAAGCTGGTGTGAAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- CTCTATGTATGCAAATAATTGAAATAAATAGGAAGCTGGTGTGAAGAAAC
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> CTCTATGTATGCAAATAATTGAAATAAATAGGAAGCTGGTGTGAAGAAAC
CT0102495      --> ttattgtctaaaattaatTTGAAATAAATAGGTAGCTGGTGTGAAGAAAC

               801    -    851
RU04182        --> TTGCGTCATCTATGTTGAAGTGGTTCCTTTGTAAAAATGAAAATTATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- ..................................................
CT0082270      <-- ..................................................
RH09E179       <-- ..................................................
ET0004137      <-- ..................................................
ET0008831      <-- ..................................................
ET0026781      <-- ..................................................
ET0032551      <-- ..................................................
ET0034257      <-- ..................................................
ET0010959      <-- ..................................................
ET0040165      <-- TTGCGTCATCTATGTTGAAGTGGTTCCTTTGT..................
RH25AC116      --> ..................................................
CT0045833      --> ..................................................
CT0079395      --> ..................................................
ET0064802      --> ..................................................
RH55BW27       --> ..................................................
CT0101557      --> ..................................................
CT0013613      --> ..................................................
RH28AD72       --> ..................................................
ET0137228      --> ..................................................
ET0138863      --> ..................................................
ET0140803      --> ..................................................
ET0139357      --> ..................................................
CT0032089      --> TTGCGTCATCTATGTTGAAGTGGTTCCTTTGTAAAAATGAAAATTATGAC
CT0102495      --> TTGCGTCATCTATGTTGAAGTGGTTCCTTTGTAAAAATGAAAATTATGAC

               851    -    901
RU04182        --> CCTGGATTCGGAATTAATTTTTCTTGCCTCTTTTACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0065215      <-- .......................................
CT0082270      <-- .......................................
RH09E179       <-- .......................................
ET0004137      <-- .......................................
ET0008831      <-- .......................................
ET0026781      <-- .......................................
ET0032551      <-- .......................................
ET0034257      <-- .......................................
ET0010959      <-- .......................................
ET0040165      <-- .......................................
RH25AC116      --> .......................................
CT0045833      --> .......................................
CT0079395      --> .......................................
ET0064802      --> .......................................
RH55BW27       --> .......................................
CT0101557      --> .......................................
CT0013613      --> .......................................
RH28AD72       --> .......................................
ET0137228      --> .......................................
ET0138863      --> .......................................
ET0140803      --> .......................................
ET0139357      --> .......................................
CT0032089      --> CCTGGATTCGGAATTAATTTTTCTTGCCTCTTTTACGTT
CT0102495      --> TCTGGATTCGGAATTAATTTATCTTGCCTCTTTTcgtt.