SNPs of unigene RU04501
               1      -     51
RU04501        --> CCTAGAACATCAGGAACAGCAGCAGCATCAGGAGCATCAGGAACATCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- CCTAGAACATCAGGAACAGCAGCAGCATCAGGAGCATCAGGAACATCAGG
ET0122593      <-- CCTAGAACATCAGGAACAGCAGCAGCATCAGGAGCATCAGGAACATCAGG
ET0120825      <-- .CTAGAACATCAGGAACAGCAGCAGCATCAGGAGCATCAGGAACATCAGG
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               51     -    101
RU04501        --> ATCATCAGCAACAAGCGCTCCAACTTCTCTGCGTTGGGATCACCAAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ATCATCAGCAACAAGCGCTCCAACTTCTCTGCGTTGGGATCACCAAACCA
ET0122593      <-- ATCATCAGCAACAAGCGCTCCAACTTCTCTGCGTTGGGATCACCAAACCA
ET0120825      <-- ATCATCAGCAACAAGCGCTCCAACTTCTCTGCGTTGGGATCACCAAACCA
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               101    -    151
RU04501        --> TTCAGTTTTCTGTTAATGCTTGGGTGTTTCTTGTGGCTGTGCTTGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- TTCAGTTTTCTGTTAATGCTTGGGTGTTTCTTGTGGCTGTGCTTGCCATT
ET0122593      <-- TTCAGTTTTCTGTTAATGCTTGGGTGTTTCTTGTGGCTGTGCTTGCCATT
ET0120825      <-- TTCAGTTTTCTGTTAATGCTTGGGTGTTTCTTGTGGCTGTGCTTGCCATT
CT0097020      <-- ............................................tCCATT
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ...............ATGCTTGGGTGTTTCTTGTGGCTGTGCTTGCCATT
CT0078404      --> ....................TGGGTGTTTCTTGTGGCTGTGCTTGCCATT
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               151    -    201
RU04501        --> TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
ET0122593      <-- TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
ET0120825      <-- TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
CT0097020      <-- TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
CT0078404      --> TTCCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
ET0138059      --> ..CCCATTGGTGCCTAGGCACCTTTCGAATAGAGCATATCGGCTTTCTTT
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               201    -    251
RU04501        --> T-ATGGGCACAGCGTGTTCCTCTCTTTATTCCACATACTCGCTCTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- T-ATGGGCACAGCGTGTTCCTCTCTT........................
ET0122593      <-- T-ATGGGCACAGCGTGTTCCTCTCTT........................
ET0120825      <-- T-ATGGGCACAGCGTGTTtccttcttcttt....................
CT0097020      <-- T-ATGGGCACAGCGTGTTCCTCTCTTTATTCCACGTACTCGCTCTATGGG
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> T-ATGGGCACAGCGTGTTCCTCTCTTTATTCCACATACTCGCTCTATGGG
CT0078404      --> T-ATGGGCACAGCGTGTTCCTCTCTTTATTCCACATACTCGCTCTATGGG
ET0138059      --> TTATGGGCACAGCGTGTTCCTCTCTTTATTCCACATACTCGCTCTATGGG
RH12I6         --> ....................................ACTCGCTCTATGGG
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               251    -    301
RU04501        --> ATACCGAGGGACTGGAACTTACAGGGTTTGCAAGTTTACTTTCGGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ATACCGAGGGACTGGAACTTACAGGGTTTGCAAGTTTACTTTCGGTCAAT
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> AAACCGAGGGACTGGAACTTA.............................
CT0078404      --> AAACCGAGGGACTGGAACTTACAGGGTTTGCAAGTTTACTTTCGGTCAAT
ET0138059      --> AAACCGAGGGACTGGAACTTACAGGGTTTGCAAGTTTACTTTCGGTCAAT
RH12I6         --> ATACCGAGGGACTGGAACTTACAGGGTTTGCAAGTTTACTTTCGGTCAAT
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               301    -    351
RU04501        --> AGTCATGTCTAAAGATTTTATCTACTTGATATACTGCTTGACCTTTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- AGTCATGTCTAAAGATTTTATCTACTTGATATACTGCTTGACCTTTGTCA
ET0006600      <-- ..TCATGTCTAAAGATTTTATCTACTTGATATACTGCTTGACCTTTGTCA
ET0013174      <-- ...........AAGATGTTATCTACTTGATATACTGCTTGACCTTTGTCA
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> AGTCATGTCTAAAGATGTTATCTACTTGATATA.................
ET0138059      --> AGTCATGTCTAAAGATGTTATCTACTTGATATACTGCTTGACCTTTGTCA
RH12I6         --> AGTCATGTCTAAAGATTTTATCTACTTGATATACTGCTTGACCTTTGTCA
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               351    -    401
RU04501        --> CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGTCGGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGT......
ET0006600      <-- CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGTCGGGCT
ET0013174      <-- CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGTCGGGCT
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGTCGG...
RH12I6         --> CATCCCATCTTTCTCTCAAATTCGCCTTGATTCCCATTCTATGTCGGGCT
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               401    -    451
RU04501        --> CTCGTACATGTTGCCAAGTTCCTTAGGCGCAACTTTAGTCAATCCTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- CTCGTACATGTTGCCAAGTTCCTTAGGCGCAACTTTAGTCAATCCTCATT
ET0013174      <-- CTCGTACATGTTGCCAAGTTCCTTAGGCGCAACTTTAGTCAATCCTCATT
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> CTCGT.............................................
CT0000497      --> .....ACATGTTGCCAAGTTCCTTAGGCGCAACTTTAGTCAATCCTCATT
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               451    -    501
RU04501        --> GTACAGGAAATACTTGGAAGAGCCTTGCGTTTGGGTTGAGTCAAACACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- GTACAGGAAATACTTGGAAGAGCCTTGCGTTTGGGTTGAGTCAAACACAA
ET0013174      <-- GTACAGGAAATACTTGGAAGAGCCTTGCGTTTGGGTCGAGTCAAACACAA
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> GTACAGGAAATACTTGGAAGAGCCTTGCGTTTGGGTCGAGTCAAACACAA
CT0118331      --> .............TTGGAAGAGCCTTGCGTTTGGGTTGAGTCAAACACAA
CT0126862      --> .............TTGGAAGAGCCTTGCGTTTGGGTTGAGTCAAACACAA
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               501    -    551
RU04501        --> CTACCCTCAGCATACTCTCTTCACATGCTGAGATTGGAAATGGCTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- CTACCCTCAGCATACTCTCTTCACATGCTGAGATT...............
ET0013174      <-- CTACCCTCAGCATACTCTCTTCACA.........................
ET0136497      <-- ................................ATTGGAAATGGCTTTCTT
ET0131294      <-- ......................................AATGGCTTTCTT
ET0119688      <-- ..................................................
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> CTACCCTCAGCATACTCTCTTCACATGCTGAGATTG..............
CT0118331      --> CTACCCTCAGCATACTCTCTTCACATGCTGAGATTGGAAATGGCTTTCTT
CT0126862      --> CTACCCTCAGCATACTCTCTTCACATGCTGAGATTGGAAATGGCTTTCTT
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               551    -    601
RU04501        --> TTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- TTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
ET0131294      <-- TTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
ET0119688      <-- ..............GTTATCGTGGCAGCGCAACATTATACAGACATTCGC
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> TTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
CT0126862      --> TTGATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
ET0116623      --> ..GATTATATCTTTGTTCTCGTGGCAGCGCAACATTATACAGACATTCGC
ET0077144      --> .................................ATTATACAGACAT-CGC
ET0062277      --> ..................................................
CT0055291      --> ..................................................

               601    -    651
RU04501        --> AT--TGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................  Ethylene
ET0122593      <-- ..................................................  Ethylene
ET0120825      <-- ..................................................  Ethylene
CT0097020      <-- ..................................................  Control
ET0006600      <-- ..................................................  Ethylene
ET0013174      <-- ..................................................  Ethylene
ET0136497      <-- ATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT  Ethylene
ET0131294      <-- ATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT  Ethylene
ET0119688      <-- ATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT  Ethylene
CT0054227      <-- ..................................................  Control
CT0038241      --> ..................................................  Control
CT0078404      --> ..................................................  Control
ET0138059      --> ..................................................  Ethylene
RH12I6         --> ..................................................  WaterDS
CT0000497      --> ..................................................  Control
CT0118331      --> AT--TGGCAGCTATTGAAGCTCATGTATCATG..................  Control
CT0126862      --> AT--TGGCAGCTATTGAAGCTCATGTATCATG..................  Control
ET0116623      --> ATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT  Ethylene
ET0077144      --> ATATTGGCAGCTATTGAAGCTCATGTATCATGCTCCGGTGACTTCTGACT  Ethylene
ET0062277      --> ........................GTATCATGCTCCGGTGACTTCTGACT  Ethylene
CT0055291      --> ..................................................  Control

               651    -    701
RU04501        --> ACCATCTGAGTGTGTGGACCAAGATAGGGAGGACAGTTCATCCATTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATC
ET0131294      <-- ACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATC
ET0119688      <-- ACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATC
CT0054227      <-- ..................................................
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATC
ET0077144      --> ACCATCTGAGTGTGTGGACTAAGATAGGGAGGACAGTTCATCCATTCATC
ET0062277      --> ACCATCTGAGTGTGTGGACCAAGATAGGGAGGACAGTTCATCCATTCATC
CT0055291      --> ..................................................

               701    -    751
RU04501        --> CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
ET0131294      <-- CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
ET0119688      <-- CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
CT0054227      <-- .....CTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
ET0077144      --> CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
ET0062277      --> CACCGCTACGCCCCATTCTTGGAGACACCCGTTTCTACAATCCAGAGATG
CT0055291      --> ....................GGAGACACCCGTTTCTACAATCCAGAGATG

               751    -    801
RU04501        --> GTGGTTAAGGTAGAGACGGAAAGACGAGGGAGAAGATTTAGAGGGGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- GTG...............................................
ET0131294      <-- GTG...............................................
ET0119688      <-- GTGGTTAAGGTAGAGACGGAA.............................
CT0054227      <-- GTGGTTAAGGTAGAGACGGAAAGACGAGGGAGAAGATTTAGAGGGGCAGT
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> GTGGTTAAGGTAGAGACGGAAAGACGAGGG....................
ET0077144      --> GTGGTTAAGGTAGAGACGGAAAGACGAGGGAGAAGATTTAaatcgactgc
ET0062277      --> GTGGTTAAGGTAGAGACGGAAAGACGAGGGAGAAGATTTAGAGGGGCAGT
CT0055291      --> GTGGTTAAGGTAGAGACGGAAAGACGAGGGAGAAGATTTAGAGGGGCAGT

               801    -    851
RU04501        --> GAATTTCAATGGAAATTTTCTTGAATGCTCTTTAACCTGATGTCAGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- GAATTTCAATGGAAATTTTCTTGAATGCTCTTTAACCTGATGTCAGATAT
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> cctat.............................................
ET0062277      --> GAATTTCAATGGAAATTTTCTTGAATGCTCTTTAACCTGATGTCAGATAT
CT0055291      --> GAATTTCAATGGAAATTTTCTTGAATGCTCTTTAACCTGATGTCAGATAT

               851    -    901
RU04501        --> ATTGGATTAGCAAATGTTCATTTGGATTCTAGGATATGGATAAAGTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- ATTGGATTAGCAAATGTTCATTTGGATTCTAGGATATGGATAAAGTAGAA
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ATTGGATTAGCAAA....................................
CT0055291      --> ATTGGATTAGCAAATGTTCATTTGGATTCTAGGATATGGATAAAGTAGAA

               901    -    951
RU04501        --> AGTATCTCCACTGAGGTTGTGTTGAGTTTCTAGTTCTACTATGGACTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- ..................................................
ET0122593      <-- ..................................................
ET0120825      <-- ..................................................
CT0097020      <-- ..................................................
ET0006600      <-- ..................................................
ET0013174      <-- ..................................................
ET0136497      <-- ..................................................
ET0131294      <-- ..................................................
ET0119688      <-- ..................................................
CT0054227      <-- AGTATCTCCACTGAGGTTGTGTTGAGTTTCTAGTTCTACTATGGACTAAC
CT0038241      --> ..................................................
CT0078404      --> ..................................................
ET0138059      --> ..................................................
RH12I6         --> ..................................................
CT0000497      --> ..................................................
CT0118331      --> ..................................................
CT0126862      --> ..................................................
ET0116623      --> ..................................................
ET0077144      --> ..................................................
ET0062277      --> ..................................................
CT0055291      --> AGTATCTCCACTGAGGTTGTGTTGAGTTTCTAGTTCTACTATGGACTAAC

               951    -   1001
RU04501        --> TATTTATTGAACTTTTATCTTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
ET0117263      <-- .........................
ET0122593      <-- .........................
ET0120825      <-- .........................
CT0097020      <-- .........................
ET0006600      <-- .........................
ET0013174      <-- .........................
ET0136497      <-- .........................
ET0131294      <-- .........................
ET0119688      <-- .........................
CT0054227      <-- TATTTATTGAA..............
CT0038241      --> .........................
CT0078404      --> .........................
ET0138059      --> .........................
RH12I6         --> .........................
CT0000497      --> .........................
CT0118331      --> .........................
CT0126862      --> .........................
ET0116623      --> .........................
ET0077144      --> .........................
ET0062277      --> .........................
CT0055291      --> TATTTATTGAACTTTTATCTTTAGT