SNPs of unigene RU04974
               1      -     51
RU04974        --> AAGTCAGCCAAAAAGTAAATATTTTATTCAGTGATGCTTGAGGGGTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> AAGTCAGCCAAAAAGTAAATATTTTATTCAGTGATGCTTGAGGGGTAAGT
CT0081587      --> .AGTCAGCCAAAAAGTAAATATTTTATTCAGTGATGCTTGAGGGGTAAGT
CT0127465      --> ............................CAGTGATGCTTGAGGGGTAAGT
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               51     -    101
RU04974        --> TTACCGTTAATACACGCAAGAAGAGAAGAATTACTGAGGGAAAA-CACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> TTACCGTTAATACACGCAAGAAGAGAAGAATTACTGAGGGAAAAACACTC
CT0081587      --> TTACCGTTAATACACGCAAGAAGAGAAGAATTACTGAGGGAAAAACACTC
CT0127465      --> TTACCGTTAATACACGCAAGAAGAGAAGAATTACTGAGGGAAAAACACTC
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               101    -    151
RU04974        --> TCCAATCAAAAGCAAAGAAGCTTAGACCAAAAGCCCTAGAAAGATGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> TCCAATCAAAAGCAAAGAAGCTTAGAACAAAAGCCCTAGAAAGATGGATG
CT0081587      --> TCCAATCAAAAGCAA...................................
CT0127465      --> TCCAATCAAAAGCA....................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               151    -    201
RU04974        --> AAAAACAAAAATGGATCTATGCCCCTTTGATTAGGGCGAGGGCATCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> AAAAACAAAAATGGATCTATGCCCCTTTGATTAGGGCGAGGGCATCAGAC
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> .....CAAAAATGGATCTATGCCCCTTTGATTAGGGCGAGGGCATCAGAC
CT0025458      --> .....CAAAAATGGATCTATGCCCCTTTGATTAGGGCGAGGGCATCAGAC
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               201    -    251
RU04974        --> CCAGTGGGGAGTGCAGGAATTGCTCCCTTCTTAGTAGTTGTAATTGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................  Control
ET0134588      <-- ..................................................  Ethylene
ET0039761      <-- ..................................................  Ethylene
ET0087565      <-- ..................................................  Ethylene
ET0090469      <-- ..................................................  Ethylene
ET0091190      <-- ..................................................  Ethylene
CT0108030      <-- ..................................................  Control
CT0115224      <-- ..................................................  Control
CT0030421      <-- ..................................................  Control
CT0083189      <-- ..................................................  Control
ET0114940      <-- ..................................................  Ethylene
ET0138520      --> CCAGTGGGGAGTGCAGGAATTGCTCCCTTCTTAGTAGTTGTAATTGCTCC  Ethylene
CT0081587      --> ..................................................  Control
CT0127465      --> ..................................................  Control
CT0005830      --> CCAGTGGGGAGTGCAGGAATTGCTTCCTTCTTAGTAGTTGTAATTGCTCC  Control
CT0025458      --> CCAGTGGGGAGTGCAGGAATTGCTTCCTTCTTAGTAGTTGTAATTGCTCC  Control
ET0000710      --> .......................TCCCTTCTTAGTAGTTGTAATTGCTCC  Ethylene
ET0130214      --> ..................................................  Ethylene
ET0130834      --> ..................................................  Ethylene
ET0131173      --> ..................................................  Ethylene
ET0131526      --> ..................................................  Ethylene
ET0132064      --> ..................................................  Ethylene
ET0132901      --> ..................................................  Ethylene
ET0134295      --> ..................................................  Ethylene
ET0134333      --> ..................................................  Ethylene
ET0135022      --> ..................................................  Ethylene
ET0128556      --> ..................................................  Ethylene
ET0135188      --> ..................................................  Ethylene
ET0028131      --> ..................................................  Ethylene
CT0018457      --> ..................................................  Control

               251    -    301
RU04974        --> ACATGCATTTGCAAATTTGAGTACTTCCCTCAATCTTGGCTCATCCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ACATGCATTTG.......................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ACATGCATTTGCAAATTTGAGTACTTCCCTCAATCTTGGCTCATCCTCAA
CT0025458      --> ACATGCATTTGCAAATTTGAGTACTTCCCTCAATCTTGGCTCATCCTCAA
ET0000710      --> ACATGCATTTGCAAATTTGAGTACTTCCCTCAATCTTGGCTCATCCTCAA
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               301    -    351
RU04974        --> GAATGGATTGGTCATCAACAATCTTTGTGAGAAGAGCACCCACAAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- .................ACAATCTTTGTGAGAAGAGCACCCACAAATGAA
ET0134588      <-- ...........................TGAGAAGAGCACCCACAAATGAA
ET0039761      <-- .................................................t
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> GAATGGATTGGTCATCAACAATCTTTGTGAGAAGAGCACCCA........
CT0025458      --> GAATGGATTGGTCATCAACAATCTTTGTGAGAAGAGCACCCA........
ET0000710      --> GAATGGATTGGTCATCAACAATCTTTGTGAGAAGAGCACCCACAAATGCA
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               351    -    401
RU04974        --> TCACCAGCACCAGTAGTATCTACCGCAGTTACATGGAAAG--CTTCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- TCACCAGCACCAGTAGTATCTACCGCAGTTACATGGAAAG--CTTCCACA
ET0134588      <-- TCACCAGCACCAGTAGTATCTACCGCAGTTACATGGAAAG--CTTCCACA
ET0039761      <-- aCACCAGCACCAGTAGTATCTACCGCAGTTACATGGAAAG--CTTCCACA
ET0087565      <-- ..........................AGTTACATGGAAAG--CTTCCACA
ET0090469      <-- ..........................AGTTACATGGAAAG--CTTCCACA
ET0091190      <-- ..........................AGTTACATGGAAAG--CTTCCACA
CT0108030      <-- ............................cgtaATGGAAAGGACTTCCACA
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> TCACCAGCACCAGTAGTAT...............................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               401    -    451
RU04974        --> GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCATTCTCACCAAG
ET0134588      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
ET0039761      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
ET0087565      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
ET0090469      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
ET0091190      <-- GATCCACGGAAA-TT-CTTAGTGTAGTATTTG-CAACCCTTCTCACCGAG
CT0108030      <-- GATCCACGGAAAGTTACTTAGTGTAGTATTTGTCAACCATTCTCACCAAG
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               451    -    501
RU04974        --> AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- AGTGACAA..........................................
ET0134588      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
ET0039761      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
ET0087565      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
ET0090469      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
ET0091190      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
CT0108030      <-- AGTGACAAGGAGGAGCTTCAAGTTAGAGTGCCATAGAGTCAGTGCATTTT
CT0115224      <-- ..........................AGTGCCATAGAGTCAGTGCATTTT
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               501    -    551
RU04974        --> CATCATCAATACTGTCATTTCCTGTGAGGAACTCGAGCTCCACATCGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- CATCATCAATACTGTCATTTCCTGTGAGGAACTCGAGCTCCACATCGCTG
ET0039761      <-- CATCATCAATACTGTCATTTCCTGTGAGGAACTCGAGCTCCACATCGCTG
ET0087565      <-- CATCATCAATACTGTCAT................................
ET0090469      <-- CATCATCAATACTGTCAT................................
ET0091190      <-- CATCATCAATACTGTCAT................................
CT0108030      <-- CATCATCAATACTGTCATTTCCTGTGAGGAACTCGAGCTCCACATCGCTG
CT0115224      <-- CATCATCAATACTGTCATTTCCTGTGAGGAACTCGAGCTCCACATCGCTG
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..........................................CATCGCTG
ET0130834      --> ..........................................CATCGCTG
ET0131173      --> ..........................................CATCGCTG
ET0131526      --> ..........................................CATCGCTG
ET0132064      --> ..........................................CATCGCTG
ET0132901      --> ..........................................CATCGCTG
ET0134295      --> ..........................................CATCGCTG
ET0134333      --> ..........................................CATCGCTG
ET0135022      --> .........................................ctATCGCTG
ET0128556      --> .......................................acaataCGCTG
ET0135188      --> .......................................acaataCGCTG
ET0028131      --> ..................................................
CT0018457      --> ..................................................

               551    -    601
RU04974        --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ACCTTG............................................
ET0039761      <-- ACCTTGATCACTTCAGCCTTTTCCCATATACT..................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGTGT
CT0115224      <-- ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGTGC
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0130834      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0131173      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0131526      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0132064      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0132901      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0134295      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0134333      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0135022      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0128556      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0135188      --> ACCTTGATCACTTCAGCCTTTTCCCATATACTCAATATCTGCTCGCGCGC
ET0028131      --> ............................................GCGTGC
CT0018457      --> ..................................................

               601    -    651
RU04974        --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- CTCCT.............................................
CT0115224      <-- CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTAGGGTCATAAGAG
CT0030421      <-- ..CCTTAGGTGAGGGCCGACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
CT0083189      <-- ..................................................
ET0114940      <-- ..................................................
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0130834      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0131173      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0131526      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0132064      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0132901      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0134295      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0134333      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0135022      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0128556      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0135188      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
ET0028131      --> CTCCTTAGGTGAGGGCC-ACAGTGGTAGCCGGAGGTTCGGGTCATAAGAG
CT0018457      --> ..................................................

               651    -    701
RU04974        --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- AGCAAGGCACC.......................................
CT0030421      <-- AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
CT0083189      <-- ..................................CCTTTAGATGTGCCGA
ET0114940      <-- .......................................gtATGTGCCGA
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0130834      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0131173      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0131526      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0132064      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0132901      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0134295      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0134333      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0135022      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0128556      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0135188      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
ET0028131      --> AGCAAGGCACCGGCATCTTTGGCAACCTCCATTGCCTTTAGATGTGCCGA
CT0018457      --> ..................................................

               701    -    751
RU04974        --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
CT0083189      <-- CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0114940      <-- CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0130834      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0131173      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0131526      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0132064      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0132901      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0134295      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0134333      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0135022      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0128556      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0135188      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
ET0028131      --> CCTGCATGGCTCCACGATCAAGCTTATTGATCCATAGTGGAACACTTTGG
CT0018457      --> ...........................TGATCCATAGTGGAACACTTTGG

               751    -    801
RU04974        --> CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG
CT0083189      <-- CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG
ET0114940      <-- CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> CCGATCTGA.........................................
ET0130834      --> CCGATCTGA.........................................
ET0131173      --> CCGATCTGA.........................................
ET0131526      --> CCGATCTGA.........................................
ET0132064      --> CCGATCTGA.........................................
ET0132901      --> CCGATCTGA.........................................
ET0134295      --> CCGATCTGA.........................................
ET0134333      --> CCGATCTGA.........................................
ET0135022      --> CCGATCTGA.........................................
ET0128556      --> CCGATCTG..........................................
ET0135188      --> CCGATCTGA.........................................
ET0028131      --> CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG
CT0018457      --> CCGATCTGATGAGCTCGAAATTGAGCTCTTCGGGCTTGAGCAGCATATCG

               801    -    851
RU04974        --> GCGCTAGGGTTCCGGTAGAACATGAACTCACGCTCTCCGTCGGCGCGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- GCGCT.............................................
CT0083189      <-- GCGCTAGGGTTCC.....................................
ET0114940      <-- GCGCTAGGGTTCCGGTAGAACATGAACTCACGCTCTCCGTCGGCGCGTAG
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> GCGCTAGGGTTCCGGTAGAACAT...........................
CT0018457      --> GCGCTAGGGTTCCGGTAGAACATGAACTCACGCTCTCCGTCGGCGCGTAG

               851    -    901
RU04974        --> GGTCACGAAGGCCAGAGCGGTGCGCGCGCCTTGGTCGAACAGGATGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0047815      <-- ..................................................
ET0134588      <-- ..................................................
ET0039761      <-- ..................................................
ET0087565      <-- ..................................................
ET0090469      <-- ..................................................
ET0091190      <-- ..................................................
CT0108030      <-- ..................................................
CT0115224      <-- ..................................................
CT0030421      <-- ..................................................
CT0083189      <-- ..................................................
ET0114940      <-- GGTCACGAAGGCCAGAGCGGTGCGCGCGCCTTGGTCGAACAGGATGCCAT
ET0138520      --> ..................................................
CT0081587      --> ..................................................
CT0127465      --> ..................................................
CT0005830      --> ..................................................
CT0025458      --> ..................................................
ET0000710      --> ..................................................
ET0130214      --> ..................................................
ET0130834      --> ..................................................
ET0131173      --> ..................................................
ET0131526      --> ..................................................
ET0132064      --> ..................................................
ET0132901      --> ..................................................
ET0134295      --> ..................................................
ET0134333      --> ..................................................
ET0135022      --> ..................................................
ET0128556      --> ..................................................
ET0135188      --> ..................................................
ET0028131      --> ..................................................
CT0018457      --> GGTCA.............................................

               901    -    951
RU04974        --> CTCCCGTCACGCC
                   ~~~~~~~~~~~~~
CT0047815      <-- .............
ET0134588      <-- .............
ET0039761      <-- .............
ET0087565      <-- .............
ET0090469      <-- .............
ET0091190      <-- .............
CT0108030      <-- .............
CT0115224      <-- .............
CT0030421      <-- .............
CT0083189      <-- .............
ET0114940      <-- CTCCCGTCACGCC
ET0138520      --> .............
CT0081587      --> .............
CT0127465      --> .............
CT0005830      --> .............
CT0025458      --> .............
ET0000710      --> .............
ET0130214      --> .............
ET0130834      --> .............
ET0131173      --> .............
ET0131526      --> .............
ET0132064      --> .............
ET0132901      --> .............
ET0134295      --> .............
ET0134333      --> .............
ET0135022      --> .............
ET0128556      --> .............
ET0135188      --> .............
ET0028131      --> .............
CT0018457      --> .............