SNPs of unigene RU05029
               1      -     51
RU05029        --> tttttACTAGAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- .....ACTAGAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> tttttttttGAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
CT0123298      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0011489      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0027993      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0035311      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0039094      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0040012      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0040989      --> ......tttGAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0041481      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0041819      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0044532      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0049608      --> .........GAAAAGAAGTACAATTATATATTACAATGATCACCACAATC
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               51     -    101
RU05029        --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
CT0000736      <-- ...............agAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
CT0131652      <-- .............................................AAGTC
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
CT0123298      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0011489      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0027993      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0035311      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0039094      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0040012      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0040989      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0041481      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0041819      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0044532      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0049608      --> TCCATGGTTGCAAGGATAAAAAATTACCAGCAGACCAGGATGGAGAAGTC
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               101    -    151
RU05029        --> GCACAATTACACAACCATAGAACTATGAACCAAGTAACTGCACTTACTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTA.
CT0000736      <-- GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
CT0131652      <-- GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0059986      <-- ...............................AAGTAACTGCACTTACTAA
ET0063236      <-- ...............................AAGTAACTGCACTTACTAA
ET0062365      <-- ...............................................TAA
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> GCACAATTACACAACCATAGAACTATGAACCCAGTAACTGCACTTACTAA
CT0123298      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0011489      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0027993      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0035311      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0039094      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0040012      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0040989      --> GCACAATTACACAACCATAGAACTATGAACCCAGTAACTGCACTTACTAA
ET0041481      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0041819      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0044532      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0049608      --> GCACAATTACACAACCATTGAACTATGAACCAAGTAACTGCACTTACTAA
ET0073886      --> ......................CTATGAACCAAGTAACTGCACTTACTAA
ET0109927      --> .........................................ACTTACTAA
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               151    -    201
RU05029        --> AACCCTAGGTGAACTGAGCGAAACCTCTACAAATGTCAAAAATTTCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- AACCCTAGGTGAACTGAGCGAAACCTCTg.....................
CT0131652      <-- AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0059986      <-- AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0063236      <-- AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0062365      <-- AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0094449      <-- ....................................aaaatttactATTG
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> AACCCTAGGTGAACTGAGCGAAACCTCTACAAATGTCAAAAATTTCATTG
CT0123298      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0011489      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0027993      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0035311      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0039094      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0040012      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0040989      --> AACCCTAGGTGAACTGAGCGAAACCTCTACAAATGTCAAAAATTTCATTG
ET0041481      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0041819      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0044532      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0049608      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0073886      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
ET0109927      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
CT0081085      --> AACCCTAGGTGAACTGAGCGAAACCTCTGCAAATGTCAAAAATTTCATTG
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               201    -    251
RU05029        --> CAGAAGACTGCTACTGGATCCACCAGACTGAA-CCTAAAAACCCCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAA--ACCCA--AC
ET0059986      <-- CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAA--ACCCA--AC
ET0063236      <-- CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAA--ACCCA--AC
ET0062365      <-- CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAA--ACCCA--AC
ET0094449      <-- CAGAAGACTGCTACTGGATCCACCAGACTGAA-CCTAAAAACCCCAAACC
ET0114329      <-- ...................CCACCAGACTGAA-CCTAAA--ACCCA--AC
CT0104283      <-- ...............................................aaa
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> CAGAAG-CTGCTACTGGATACACCAGACTGAA-CCTAAAAcccaacctag
CT0123298      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0011489      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0027993      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0035311      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0039094      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0040012      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0040989      --> CAGAAG-CTGCTACTGGATACACCAGACTGAA-CCTAAAAcccaacctag
ET0041481      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0041819      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0044532      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0049608      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAAACCCTAAAACCCa.....
ET0073886      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
ET0109927      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCCAAAA--CCCAA--C
CT0081085      --> CAGAAG-CTGCTACTGGATCCACCAGACTGAA-CCTAAAA--CCCAA--C
CT0037398      --> ................................................aa
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               251    -    301
RU05029        --> CTAAGAACGAAACTAAAATAAACAAAAGATTACAACATCATAGAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0059986      <-- CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0063236      <-- CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0062365      <-- CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0094449      <-- CTAAGAACGAAACTAAAATAAACAAAAGATTACAACATCATAGAGACTTT
ET0114329      <-- CTA-GAACGAAACTAAA-TAGACAAA-GATTACAACATCATAGAGACTTT
CT0104283      <-- cctAGAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0094468      <-- ..................................caATCATAGAGACTTT
ET0068938      <-- .....................................TCATAGAGACTTT
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> aac...............................................
CT0123298      --> CTA-GAACGAAACTAAA.................................
ET0011489      --> CTA-GAACGAAACTAAA.................................
ET0027993      --> CTA-GAACGAAACTAAA.................................
ET0035311      --> CTA-GAACGAAACTAAAA................................
ET0039094      --> CTA-GAACGAAACTAAA.................................
ET0040012      --> CTA-GAACGAAACTAAA.................................
ET0040989      --> aac...............................................
ET0041481      --> CTA-GAACGAAACTAAAA................................
ET0041819      --> CTA-GAACGAAACTAAAA................................
ET0044532      --> CTA-GAACGAAACTAAAA................................
ET0049608      --> ..................................................
ET0073886      --> CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0109927      --> CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
CT0081085      --> CTA-GAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
CT0037398      --> cctAGAACGAAACTAAA-TAAACAAA-GATTACAACATCATAGAGACTTT
ET0083088      --> .....................aacAAAGATTACAACATCATAGAGACTTT
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               301    -    351
RU05029        --> AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0059986      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0063236      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0062365      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0094449      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0114329      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
CT0104283      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0094468      <-- AAATTAGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0068938      <-- AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0120450      <-- ..........................TGAAGGGTACTTCTCCAATCCGAA
ET0120857      <-- ..........................TGAAGGGTACTTCTCCAATCCGAA
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> AAAT-AGCAGACCAATCAATCT............................
ET0109927      --> AAAT-A............................................
CT0081085      --> AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAAT.....
CT0037398      --> AAAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
ET0083088      --> AGAT-AGCAGACCAATCAATCTCCACTGAAGGGTACTTCTCCAATCCGAA
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               351    -    401
RU05029        --> AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0059986      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAAT.......
ET0063236      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAAat......
ET0062365      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0094449      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0114329      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
CT0104283      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0094468      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0068938      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0120450      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0120857      <-- AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0083088      --> AGTATCATTCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
CT0120410      --> ........TCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
CT0123943      --> ........TCTCATCCCACTGAGAATCTGAGAAATCCAAGAATGTAATGT
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               401    -    451
RU05029        --> CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- CAGATTCCGGTGAAGATGAC..............................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- CAGAT.............................................
ET0094449      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCAT..............
ET0114329      <-- CAG...............................................
CT0104283      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
ET0094468      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
ET0068938      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
ET0120450      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
ET0120857      <-- CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> CAGATTCCGGTGAAGATGACCCG...........................
ET0083088      --> CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
CT0120410      --> CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
CT0123943      --> CAGATTCCGGTGAAGATGACCCGGCTGAGGACTCATCGCAGGATCGAGAG
ET0011358      --> ..........................GAGGACTCATCGCAGGATCGAGAG
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               451    -    501
RU05029        --> GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAG...........
ET0094468      <-- GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
ET0068938      <-- GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
ET0120450      <-- GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
ET0120857      <-- GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
CT0006551      <-- ..............................................CTCT
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> GGTGAAGA..........................................
CT0120410      --> GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
CT0123943      --> GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
ET0011358      --> GGTGAAGATGACCATGAAATGGCCTCCAATTTAGGAGAGTCCCATTCTCT
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               501    -    551
RU05029        --> TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- TTTCAAATCTGTAactcg................................
ET0068938      <-- TTTCAAAatactagtaactacg............................
ET0120450      <-- TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGA..
ET0120857      <-- TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGA..
CT0006551      <-- TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
CT0075947      <-- ..........GTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
ET0068498      <-- ...........................AAAGACCATCTTTGGAGCTGAAA
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
CT0123943      --> TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
ET0011358      --> TTTCAAATCTGTACTCGATGAATCATCAAAGACCATCTTTGGAGCTGAAA
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               551    -    601
RU05029        --> TCACTGGCTTTGTCTCT-GCTTCCGAACAGAGCTCCTCTGTTTT-GCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- TCACTGGCTTTGTCTCT-GCTTCCGAACAGAGCTCCTCTGTTTT-GCCCT
CT0075947      <-- TCACTGGCTTTGTCTCTTGCTTCCGAACAGAGCTCCTCTGTTTTTGCCCT
ET0068498      <-- TCACTGGCTTTGTCTCT-GCTTCCGAACAGAGCTCCTCTGTTTT-GCCCT
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> TCACTGGCTTTGTCTCT-GCTTCCGAA.......................
CT0123943      --> TCACTGGCTTTGTCTCT-GCTTCCGAA.......................
ET0011358      --> TCACTGGCTTTGTCTCT-GCTTCCGAACAGAGCTCCTCTGTTTT-GCCCT
ET0117510      --> ...........................................T-GCCCT
ET0117646      --> ...........................................T-GCCCT
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               601    -    651
RU05029        --> GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTGGCG
CT0075947      <-- GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTG...
ET0068498      <-- GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTGGCG
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> GTTTCGGCGAATTAA...................................
ET0117510      --> GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTGGCG
ET0117646      --> GTTTCGGCGAATTAACAGCCAAGCTCTCGCAAATTGCTTGGAGCTTGGCG
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               651    -    701
RU05029        --> TCAACTGCGGAAGGAAGAGGCTTGTAATTGCCAAAATCTCCAGTGATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- TCAACTGCGGA.......................................
CT0075947      <-- ..................................................
ET0068498      <-- TCAACTGCGGAAGGAAGAGGCTTGTAATTGCCAAAATCTCCAGTGATATG
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> TCAACTGCGGAAGGAAGAGGCTTGTAATTGCCAAAATCTCCAGTGATATG
ET0117646      --> TCAACTGCGGAAGGAAGAGGCTTGTAATTGCCAAAATCTCCAGTGATATG
ET0038387      --> ...................................ATCTCCAGTGATATG
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               701    -    751
RU05029        --> AGCTCCTTGATGCTTAAGATGAGGGAAATTGAGCCTGGCAAA-GTCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- AGCTCCTTGATGCTTAAGATGAGGGAAATTGAGCCTGGCAAA-GTCTCCC
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> AGCTCCTTGATGCTTAAGATGAGGGAAATTGAGCCTGGCAAA-GTCTCCC
ET0117646      --> AGCTCCTTGATGCTTAAGATGAGGGAAATTGAGCCTGGCAAA-GTCTCCC
ET0038387      --> AGCTCCTTGATGCTTAAGATGAGGGAAATTGAGCCTGGCAAA-GTCTCCC
ET0070899      --> .............TTAAGATGAGGGAAATTGAGCCTGGCAAAAGTCTCCC
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               751    -    801
RU05029        --> CTGAGCTTATAAGCAGCTTTATCATAAGCTAAAGCTGCTTCTTCGGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- CTGAGCTTATAAa.....................................
CT0039992      <-- ...AGCTTATAAGCAGCTTTATCATAAGCTAAAGCTGCTTCTTCGGCTGT
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> CTGAGCTTATAAGCAGCTTTAT............................
ET0117646      --> CTGAGCTTATAAGCAGCTTTAT............................
ET0038387      --> CTGAGCTTATAAGCAGCTTTATCATAAGCTAAAGCTGCTTCTTCGGCTGT
ET0070899      --> CTGAGCTTATAAGCAGCTTTATCATAAGCTAAAGCTGCTTCTTCGGCTGT
ET0100904      --> .....CTTATAAGCAGCTTTATCATAAGCTAAAGCTGCTTCTTCGGCTGT
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               801    -    851
RU05029        --> TTCGAATGTGCCAAGCCAGAGGCGAGTTTGGTTCTTGGGGAGTCTAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- TTCGAATGTGCCAAGCCAGAGGCGAGTTCGGTTCTTGGGGAGTCTAATCT
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> TTCGAATGTGCCAAGCCAGAGGCGAGTTCGGTTCTTGGGGAGTCTAATCT
ET0070899      --> TTCGAATGTGCCAAGCCAGAGGCGAGTTTGGTTCTTGGGGAGTCTAATCT
ET0100904      --> TTCGAATGTGCCAAGCCAGAGGCGAGTTCGGTTCTTGGGGAGTCTAATCT
CT0066171      --> .............................................AATCT
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               851    -    901
RU05029        --> CAGCAACCCATTTTCCCCAATGTCTCTGCCTCACTCCCCTGTAGAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- CAGCAACCCATTTTCCCCAATGCCTCTGCCTCACTCCCCTGTAGAGCTTT
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> CAGCAACCCATTTTCCCCAATGTCTCTGCCTCACTCCCCTGTAGAGCTTT
ET0070899      --> CAGCAACCCATTTTCCCCAATGTCTCTGCCTCACTCCCCTGTAGAGCTTT
ET0100904      --> CAGCAACCCATTTTCCCCAATGCCTCTGCCTCACTCCCCTGTAGAGCTTT
CT0066171      --> CAGCAACCCATTTTCCCCAATGCCTCTGCCTCACTCCCCTGTAGAGCTTT
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               901    -    951
RU05029        --> GTGGGCTTGGGAGTACCAGATTGCTTCATTGGG-ATTGCTTTTGGGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- GTGGGCTTGGGAGTACCAGATTGCTTCATTGGG-ATTGCTTTTGGGCCAA
ET0073584      <-- ............GTACCAGATTGCTTCATTGGGGATTGCTTTTGGGCCAA
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> GTGGGCTTGGGAGTACCAGta.............................
ET0070899      --> ..................................................
ET0100904      --> GTGGGCTTGGGAGTACCAGATTGCTTCATTGGG-ATTGCTTTTGGGCCAA
CT0066171      --> GTGGGCTTGGGAGTACCAGATTGCTTCATTGGG-ATTGCTTTTGGGCCAA
ET0098221      --> ...........AGTACCAGATTGCTTCATTGGG-ATTGCTTTTGGGCCAA
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               951    -   1001
RU05029        --> GGAAGTTGAGGGTGTGAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- GGAAGTTGAGGGTGTGAGAGTGTT..........................
ET0073584      <-- GGAAGTTGAGGGTGTGAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
CT0053758      <-- ..aaggaagggctggaAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
CT0057327      <-- ..aaggaagggctggaAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> GGAAGTTGA.........................................
CT0066171      --> GGAAGTTGAGGGTGTGAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
ET0098221      --> GGAAGTTGAGGGTGTGAGAGTGTTGGTGGTGATATTGGTTTGGTAGTGGA
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               1001   -   1051
RU05029        --> GCTAGAGCTGCAATTTGCTGCTTCTGTTGTTGTTGGAGTATCATTTGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- GCTAGAGCTGCAATTTGCTGCTTCTGTTGTTGTTGGAGTATCATTTGGGT
CT0053758      <-- GCTAGAGCTGCAATTTGCTGCTTCTGTTGTTGTTGGAGTATCATTTGGGT
CT0057327      <-- GCTAGAGCTGCAATTTGCTGCTTCTGTTGTTGTTGGAGTATCATTTGGGT
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> GCTAGAGCTGCAATTTGCTG..............................
ET0098221      --> GCTAGAGCTGCAATTTGCTGCTTCTGTTGTTGTTGGAGTATCATTTGGGT
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               1051   -   1101
RU05029        --> TTCGATTTGACGAATTTGAGATGGGGTGAGTTGGTTAAGCCCCAATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- TTCGATTTGACGAATTTGAGATGGGGTGAGTTGGTTAAGCCCCAATGAAC
CT0053758      <-- TTCGATTTGACGAATTTGAGATGGGGTGAGTTGGTTAAGCCCCAATGAAC
CT0057327      <-- TTCGATTTGACGAATTTGAGATGGGGTGAGTTGGTTAAGCCCCAATGAAC
ET0109766      <-- ...................................TAAGCCCCAATGAAC
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> TTCGATTTGACGAATTTGAGATGGGGTGAGTTGGTTAAGCCCCAATGAAC
CT0008776      --> ..................................................
CT0130110      --> ..................................................
CT0119911      --> ..................................................

               1101   -   1151
RU05029        --> CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGTTTGAGCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................  Control
CT0000736      <-- ..................................................  Control
CT0131652      <-- ..................................................  Control
ET0059986      <-- ..................................................  Ethylene
ET0063236      <-- ..................................................  Ethylene
ET0062365      <-- ..................................................  Ethylene
ET0094449      <-- ..................................................  Ethylene
ET0114329      <-- ..................................................  Ethylene
CT0104283      <-- ..................................................  Control
ET0094468      <-- ..................................................  Ethylene
ET0068938      <-- ..................................................  Ethylene
ET0120450      <-- ..................................................  Ethylene
ET0120857      <-- ..................................................  Ethylene
CT0006551      <-- ..................................................  Control
CT0075947      <-- ..................................................  Control
ET0068498      <-- ..................................................  Ethylene
CT0039992      <-- ..................................................  Control
ET0073584      <-- CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGTTTGAGCAAAAG  Ethylene
CT0053758      <-- CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGGTTG........  Control
CT0057327      <-- CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGGTTG........  Control
ET0109766      <-- CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGTTTGAGCAAAAG  Ethylene
CT0007018      <-- ..................................................  Control
CT0064471      --> ..................................................  Control
CT0123298      --> ..................................................  Control
ET0011489      --> ..................................................  Ethylene
ET0027993      --> ..................................................  Ethylene
ET0035311      --> ..................................................  Ethylene
ET0039094      --> ..................................................  Ethylene
ET0040012      --> ..................................................  Ethylene
ET0040989      --> ..................................................  Ethylene
ET0041481      --> ..................................................  Ethylene
ET0041819      --> ..................................................  Ethylene
ET0044532      --> ..................................................  Ethylene
ET0049608      --> ..................................................  Ethylene
ET0073886      --> ..................................................  Ethylene
ET0109927      --> ..................................................  Ethylene
CT0081085      --> ..................................................  Control
CT0037398      --> ..................................................  Control
ET0083088      --> ..................................................  Ethylene
CT0120410      --> ..................................................  Control
CT0123943      --> ..................................................  Control
ET0011358      --> ..................................................  Ethylene
ET0117510      --> ..................................................  Ethylene
ET0117646      --> ..................................................  Ethylene
ET0038387      --> ..................................................  Ethylene
ET0070899      --> ..................................................  Ethylene
ET0100904      --> ..................................................  Ethylene
CT0066171      --> ..................................................  Control
ET0098221      --> CTGTTTGCTCAAAACCCACTTGTGGGAACATTTGGGTGTTTGAGCAAAAG  Ethylene
CT0008776      --> ..................................................  Control
CT0130110      --> ..................................................  Control
CT0119911      --> ..................................................  Control

               1151   -   1201
RU05029        --> TCAGAGTACAAATTGGGATAAGAAGAGTAAAATGGAGTGTAGGAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- TCAGAGTACAAAattg..................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- TCAGAGTACAAATTGGGATAAGAAGAGTAAAATGGAGTGTAGGAAGAAGA
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> TCAG..............................................
CT0008776      --> ............................AAAATGGAGTGTAGGAAGAAGA
CT0130110      --> ..........................................GAAGAAGA
CT0119911      --> ..................................................

               1201   -   1251
RU05029        --> AGAATAATAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGAAGAGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- AGAATAATAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGAAGAG....
CT0007018      <-- .......TAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGAAGAGGTTG
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> AGAATAATAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGAAGAGGTTG
CT0130110      --> AGAATAATAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGAAGAGGTTG
CT0119911      --> ..AATAATAAGAAGTGGAAGGAGATGTTGGTGGAGAAATAGACGAGGTTG

               1251   -   1301
RU05029        --> AAGAAGCACTGTTCATACAAGGCATAAGTGCTCTCATAAGCTCCTCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- AAGAAGCACTGTTCATACAAGGCATAAGTGCTCTCATAAGCTCCTCTGAT
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> AAGAAGCACTGTTCATACAAGGCATAAGTGCTCTCATAAGCTCCTCTGAT
CT0130110      --> AAGAAGCACTGTTCATACAAGGCATAAGTGCTCTCATAAGCTCCTCTGAT
CT0119911      --> AAGAAGCACTGTTCATATAAGGCATAAGTGCTCTCATAAGCTCCTCTGAT

               1301   -   1351
RU05029        --> AAATCTGGTGACATTGAGCTGCTGCTACTGTAAATATCTACAGCTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- AAATCTGGTGACATTGAGCTGCTGCTACTGTAAATATC............
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> AAATCTGGTGACATTGAGCTGCTGCTACTGTAAATATCTACAGCTGCTGC
CT0130110      --> AAATCTGGTGACATTGAGCTGCTGCTACTGTAAATATCTACAGCTGCTGC
CT0119911      --> AAATCTGGTGACATTGAGCTGCTGCTACTGTAAATATCTATAGCTGCTGC

               1351   -   1401
RU05029        --> CATTTCAATCACAAAAGGGTA-GCTAAAATCCACAGATTTCTAAGAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> CATTTCAATCACAAAAGGGTAAGCTAAAAT....................
CT0130110      --> CATTTCAATCACAAAAGGGTA-GCTAAAATCCACAGATTTCTAAGAAACC
CT0119911      --> CATTTCAATCACAAAAGGGTAAGCTAAAAT....................

               1401   -   1451
RU05029        --> ACCTGATTCTCACCAAAATCAAAGACAGGTAGAGGTTTAGGACAAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0013271      <-- ..................................................
CT0000736      <-- ..................................................
CT0131652      <-- ..................................................
ET0059986      <-- ..................................................
ET0063236      <-- ..................................................
ET0062365      <-- ..................................................
ET0094449      <-- ..................................................
ET0114329      <-- ..................................................
CT0104283      <-- ..................................................
ET0094468      <-- ..................................................
ET0068938      <-- ..................................................
ET0120450      <-- ..................................................
ET0120857      <-- ..................................................
CT0006551      <-- ..................................................
CT0075947      <-- ..................................................
ET0068498      <-- ..................................................
CT0039992      <-- ..................................................
ET0073584      <-- ..................................................
CT0053758      <-- ..................................................
CT0057327      <-- ..................................................
ET0109766      <-- ..................................................
CT0007018      <-- ..................................................
CT0064471      --> ..................................................
CT0123298      --> ..................................................
ET0011489      --> ..................................................
ET0027993      --> ..................................................
ET0035311      --> ..................................................
ET0039094      --> ..................................................
ET0040012      --> ..................................................
ET0040989      --> ..................................................
ET0041481      --> ..................................................
ET0041819      --> ..................................................
ET0044532      --> ..................................................
ET0049608      --> ..................................................
ET0073886      --> ..................................................
ET0109927      --> ..................................................
CT0081085      --> ..................................................
CT0037398      --> ..................................................
ET0083088      --> ..................................................
CT0120410      --> ..................................................
CT0123943      --> ..................................................
ET0011358      --> ..................................................
ET0117510      --> ..................................................
ET0117646      --> ..................................................
ET0038387      --> ..................................................
ET0070899      --> ..................................................
ET0100904      --> ..................................................
CT0066171      --> ..................................................
ET0098221      --> ..................................................
CT0008776      --> ..................................................
CT0130110      --> ACCTGATTCTCACCAAAATCAAAGACAGGTAGAGGTTTAGGACAAAAGCA
CT0119911      --> ..................................................

               1451   -   1501
RU05029        --> GAAAACCCAG
                   ~~~~~~~~~~
CT0013271      <-- ..........
CT0000736      <-- ..........
CT0131652      <-- ..........
ET0059986      <-- ..........
ET0063236      <-- ..........
ET0062365      <-- ..........
ET0094449      <-- ..........
ET0114329      <-- ..........
CT0104283      <-- ..........
ET0094468      <-- ..........
ET0068938      <-- ..........
ET0120450      <-- ..........
ET0120857      <-- ..........
CT0006551      <-- ..........
CT0075947      <-- ..........
ET0068498      <-- ..........
CT0039992      <-- ..........
ET0073584      <-- ..........
CT0053758      <-- ..........
CT0057327      <-- ..........
ET0109766      <-- ..........
CT0007018      <-- ..........
CT0064471      --> ..........
CT0123298      --> ..........
ET0011489      --> ..........
ET0027993      --> ..........
ET0035311      --> ..........
ET0039094      --> ..........
ET0040012      --> ..........
ET0040989      --> ..........
ET0041481      --> ..........
ET0041819      --> ..........
ET0044532      --> ..........
ET0049608      --> ..........
ET0073886      --> ..........
ET0109927      --> ..........
CT0081085      --> ..........
CT0037398      --> ..........
ET0083088      --> ..........
CT0120410      --> ..........
CT0123943      --> ..........
ET0011358      --> ..........
ET0117510      --> ..........
ET0117646      --> ..........
ET0038387      --> ..........
ET0070899      --> ..........
ET0100904      --> ..........
CT0066171      --> ..........
ET0098221      --> ..........
CT0008776      --> ..........
CT0130110      --> GAAAACCCAG
CT0119911      --> ..........