Rose Transcriptome Database

               1      -     51
RU05077        --> AATTCAGTCAGGCAGCCCACCGCAAATTCCAAGTTTCCAATAGAAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- AATTCAGTCAGGCAGCCCACCGCAAATTCCAAGTTTCCAATAGAAACAGC
CT0049744      <-- AATTCAGTCAGGCAGCCCACCGCAAATTCCAAGTTTCCAATAGAAACAGC
CT0032855      <-- .................................................t
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               51     -    101
RU05077        --> TCCTTGGAGGCAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- TCCTTGGAGGCAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
CT0049744      <-- TCCTTGGAGGCAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
CT0032855      <-- cCCTTGGAGGCAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
ET0065175      <-- ..........CAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
ET0070700      <-- ..........CAGCCACATGGAAGCAAAGGTCTTCCTCAATCAACTTTCA
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               101    -    151
RU05077        --> ACTGTCAAGAAGAACCTACAAAAGCACCAAAGTCATCACCTTCAGTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ACTGTCAAGA........................................
CT0049744      <-- ACTGTCAAGA........................................
CT0032855      <-- ACTGTCAAGA........................................
ET0065175      <-- ACTGTCAAGAAGAACCTACAAAAGCACCAAAGTCATCACCTTCAGTATAT
ET0070700      <-- ACTGTCAAGAAGAACCTACAAAAGCACCAAAGTCATCACCTTCAGTATAT
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               151    -    201
RU05077        --> GGTGAAATGGAGAAAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- GGTGAAATGGAGAAAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAA
ET0070700      <-- GGTGAAATGGAGAAAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAA
ET0109770      <-- .............AAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAA
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> .................ACTAGCAGAACTAGAGTTCAAGAAATCAGGAAA
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               201    -    251
RU05077        --> GGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGCAAG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- GGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGCAAG-
ET0070700      <-- GGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGCAAG-
ET0109770      <-- GGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGCAAG-
CT0109046      <-- ........................................AAGAGCAAG-
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> GGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGCAAG-
ET0066003      --> ....................................GCAGAAGAGCAAG-
ET0067716      --> ....................................GCAGAAGAGCAAG-
ET0075122      --> ....................................GCAGAAGAGCAAG-
ET0079623      --> ....................................GCAGAAGAGCAAG-
ET0101199      --> ....................................GCAGAAGAGCAAG-
ET0101209      --> ....................................GCAGAAGAGCAAG-
ET0103392      --> ....................................GCAGAAGAGCAAG-
ET0106994      --> ....................................GCAGAAGAGCAAG-
ET0079040      --> ...................................gtCAGAAGAGCAAG-
ET0104111      --> ...................................gtCAGAAGAGCAAG-
ET0100925      --> .................................gtctagtAAGAGCAAGA
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               251    -    301
RU05077        --> CAAAACTCAGAGGACAAAAA--GAAGCCTCAAATTTT-GCCTCTCAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0070700      <-- CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0109770      <-- CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
CT0109046      <-- CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> CAAAACTCAGAGGACAAAAA--GAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0066003      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0067716      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0075122      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0079623      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0101199      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0101209      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0103392      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0106994      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTTTGCCTCTCAAGTA
ET0079040      --> CAAAACTCAGAGGACAAAAAAAGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0104111      --> CAAAACTCAGAGGACAAAAA-AGAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0100925      --> CAAAACTCAGAGGACAAAAA--GAAGCCTCAAATTTT-GCCTCTCAAGTA
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               301    -    351
RU05077        --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- AGCAA.............................................
ET0070700      <-- AGCAA.............................................
ET0109770      <-- AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
CT0109046      <-- AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> AGCAACAAAAGTGGTTT-GT..............................
ET0066003      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0067716      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0075122      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0079623      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0101199      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0101209      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0103392      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0106994      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0079040      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0104111      --> AGCAACAAAAGTGGTTT-GTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0100925      --> AGCAACAAAAGTGGTTTAGTGTGAGAGCACAATATCAGCAAGCAAGAGAA
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               351    -    401
RU05077        --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
CT0109046      <-- ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0136729      <-- ..............................CAGCCATGGGTTCCAAATCC
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0067716      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0075122      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0079623      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0101199      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0101209      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0103392      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0106994      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0079040      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0104111      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0100925      --> ATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCC
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               401    -    451
RU05077        --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- CC-AAAGAGTTG......................................
CT0109046      <-- CC-AAAGAGTTGCAAATCACCAATCATCATCAT.................
ET0136729      <-- CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0013876      <-- .............AAATCACCAATCATCATCATGAAACCCGGTAAACTCA
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAA-CTCA
ET0067716      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0075122      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0079623      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0101199      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0101209      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0103392      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0106994      --> CCCAAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0079040      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0104111      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0100925      --> CC-AAAGAGTTGCAAATCACCAATCATCATCATGAAACCCGGTAAACTCA
ET0067521      --> ...................................AACCCTGTAAACTCA
ET0087309      --> ...................................AACCCTGTAAACTCA
ET0087958      --> ...................................AACCCTGTAAACTCA
ET0098181      --> ...................................AACCCTGTAAACTCA
ET0102546      --> ...................................AACCCTGTAAACTCA
ET0070720      --> .....................................aaccctgaaacCA
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               451    -    501
RU05077        --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0013876      <-- TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> TGGA-GAAAACACACAACTCTGCTTCCA......................
ET0067716      --> TGGA-GAAAACACACAACTCTGCTTCCACGGT..................
ET0075122      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTG.................
ET0079623      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTG.................
ET0101199      --> TGGAAGAAAACACACAACTCTGCTTCCACGGT..................
ET0101209      --> TGGA-GAAAACACACAACTCTGCTTCCACGGT..................
ET0103392      --> TGGAAGAAAACACACAACTCTGCTTCCACGGT..................
ET0106994      --> TGGAAGAAAACACACAACTCTGCTTCCACGG...................
ET0079040      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTG.................
ET0104111      --> TGGAAGAAAACACACAACTCTGCTTCCACGGT..................
ET0100925      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTG.................
ET0067521      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0087309      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0087958      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0098181      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0102546      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0070720      --> TGGA-GAAAACACACAACTCTGCTTCCACGGTGATCTCCATGGACAACAG
ET0142772      --> .GGA-GAAAACACACAAC-CTGCTTCCACGGTGATCTCCATGGACAACAG
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               501    -    551
RU05077        --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ATCATGTCCACGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0013876      <-- ATCATGTCCGCGGAGGCT................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0087309      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0087958      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0098181      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0102546      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0070720      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
ET0142772      --> ATCATGTCTGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGG
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               551    -    601
RU05077        --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- AATTGCTTGACAGGAAAGCCAAAGATTTGAC...................
ET0013876      <-- ..................................................
CT0028036      <-- .....................AAGATTTGACTCCAAGAAACATTCATACT
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0087309      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0087958      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0098181      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0102546      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0070720      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
ET0142772      --> AATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACT
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               601    -    651
RU05077        --> AGTGATTCTTTCAATGGACGTCTTCGCTCCACTGATAAGAATTCTAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................  Control
CT0049744      <-- ..................................................  Control
CT0032855      <-- ..................................................  Control
ET0065175      <-- ..................................................  Ethylene
ET0070700      <-- ..................................................  Ethylene
ET0109770      <-- ..................................................  Ethylene
CT0109046      <-- ..................................................  Control
ET0136729      <-- ..................................................  Ethylene
ET0013876      <-- ..................................................  Ethylene
CT0028036      <-- AGTGATTCTTTCAATGGACGTCTTCGCTCCACTGATAAGAATTCTAATGT  Control
ET0032823      <-- ..................................................  Ethylene
ET0124832      <-- ..................................................  Ethylene
ET0135675      <-- ..................................................  Ethylene
CT0132893      <-- ..................................................  Control
ET0147993      <-- ..................................................  Ethylene
ET0034244      <-- ..................................................  Ethylene
ET0019213      <-- ..................................................  Ethylene
CT0073403      <-- ..................................................  Control
CT0056618      <-- ..................................................  Control
CT0097744      <-- ..................................................  Control
CT0085981      <-- ..................................................  Control
CT0053332      <-- ..................................................  Control
ET0126049      <-- ..................................................  Ethylene
CT0065135      <-- ..................................................  Control
ET0055769      <-- ..................................................  Ethylene
ET0042729      <-- ..................................................  Ethylene
ET0024441      <-- ..................................................  Ethylene
CT0100223      <-- ..................................................  Control
CT0101048      <-- ..................................................  Control
ET0052981      <-- ..................................................  Ethylene
ET0091319      <-- ..................................................  Ethylene
CT0115633      <-- ..................................................  Control
ET0064834      <-- ..................................................  Ethylene
ET0067428      <-- ..................................................  Ethylene
ET0068333      <-- ..................................................  Ethylene
ET0069458      <-- ..................................................  Ethylene
ET0071054      <-- ..................................................  Ethylene
ET0072705      <-- ..................................................  Ethylene
ET0085833      <-- ..................................................  Ethylene
ET0089783      <-- ..................................................  Ethylene
ET0092773      <-- ..................................................  Ethylene
ET0094215      <-- ..................................................  Ethylene
ET0096445      <-- ..................................................  Ethylene
ET0098315      <-- ..................................................  Ethylene
ET0107264      <-- ..................................................  Ethylene
ET0005724      <-- ..................................................  Ethylene
ET0099599      <-- ..................................................  Ethylene
ET0063976      <-- ..................................................  Ethylene
ET0070448      <-- ..................................................  Ethylene
ET0093227      <-- ..................................................  Ethylene
ET0094372      <-- ..................................................  Ethylene
ET0101360      <-- ..................................................  Ethylene
ET0063224      <-- ..................................................  Ethylene
ET0066171      <-- ..................................................  Ethylene
ET0066996      <-- ..................................................  Ethylene
ET0069949      <-- ..................................................  Ethylene
ET0070226      <-- ..................................................  Ethylene
ET0070521      <-- ..................................................  Ethylene
ET0076405      <-- ..................................................  Ethylene
ET0078195      <-- ..................................................  Ethylene
ET0088774      <-- ..................................................  Ethylene
ET0091964      <-- ..................................................  Ethylene
ET0093443      <-- ..................................................  Ethylene
ET0093983      <-- ..................................................  Ethylene
ET0097344      <-- ..................................................  Ethylene
ET0097848      <-- ..................................................  Ethylene
ET0098066      <-- ..................................................  Ethylene
ET0142641      <-- ..................................................  Ethylene
ET0095477      <-- ..................................................  Ethylene
CT0078128      --> ..................................................  Control
ET0066003      --> ..................................................  Ethylene
ET0067716      --> ..................................................  Ethylene
ET0075122      --> ..................................................  Ethylene
ET0079623      --> ..................................................  Ethylene
ET0101199      --> ..................................................  Ethylene
ET0101209      --> ..................................................  Ethylene
ET0103392      --> ..................................................  Ethylene
ET0106994      --> ..................................................  Ethylene
ET0079040      --> ..................................................  Ethylene
ET0104111      --> ..................................................  Ethylene
ET0100925      --> ..................................................  Ethylene
ET0067521      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0087309      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0087958      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0098181      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0102546      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0070720      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
ET0142772      --> AGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGT  Ethylene
CT0089330      --> ...............GGACGTCTTCGCTCCACTGATAAGAATTCTAATGT  Control
CT0090889      --> ...............GGACGTCTTCGCTCCACTGATAAGAATTCTAATGT  Control
ET0135905      --> ..................................................  Ethylene
ET0044398      --> ..................................................  Ethylene
RH04C33        --> ..................................................  WaterDS
CT0109349      --> ..................................................  Control
CT0112346      --> ..................................................  Control
ET0018835      --> ..................................................  Ethylene
CT0093611      --> ..................................................  Control
ET0129428      --> ..................................................  Ethylene
CT0060670      --> ..................................................  Control
ET0129715      --> ..................................................  Ethylene
ET0116174      --> ..................................................  Ethylene
ET0121571      --> ..................................................  Ethylene
CT0082215      --> ..................................................  Control
ET0102172      --> ..................................................  Ethylene
CT0128772      --> ..................................................  Control
ET0026867      --> ..................................................  Ethylene
CT0073830      --> ..................................................  Control
ET0096223      --> ..................................................  Ethylene
CT0046555      --> ..................................................  Control
ET0104245      --> ..................................................  Ethylene
ET0135571      --> ..................................................  Ethylene
ET0134687      --> ..................................................  Ethylene
CT0018196      --> ..................................................  Control
ET0122875      --> ..................................................  Ethylene
ET0112995      --> ..................................................  Ethylene
CT0032451      --> ..................................................  Control
CT0027022      --> ..................................................  Control
CT0096985      --> ..................................................  Control
CT0008468      --> ..................................................  Control
CT0011205      --> ..................................................  Control
CT0099547      --> ..................................................  Control
CT0081134      --> ..................................................  Control
CT0065039      --> ..................................................  Control

               651    -    701
RU05077        --> GAGAACTTCTAAAGCTGCACAAAAACCAAAGATGCCCCACAGTGAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- GAGAACTTCTAAAGCTGCACAAAAACCAA.....................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> GAGAACTTCTAAAGCTGCAaa.............................
ET0087309      --> GAGAACTTCTAAAGCTGCAaa.............................
ET0087958      --> GAGAACTTCTAAAGCTGCAaa.............................
ET0098181      --> GAGAACTTCTAAAGCTGCAaa.............................
ET0102546      --> GAGAACTTCTAAAGCTGCAaa.............................
ET0070720      --> GAGAACTTCTAAAGCTGCAaac............................
ET0142772      --> GAGAACTTCTAAAGCTGCAaac............................
CT0089330      --> GAGAACTTCTAAAGCTGCACAAAAACCAAAGATGCCCCACAGTGAAGAAA
CT0090889      --> GAGAACTTCTAAAGCTGCACAAAAACCAAAGATGCCCCACAGTGAAGAAA
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               701    -    751
RU05077        --> ATTCCCCGGGCCCAAGTAGGAGCATCACGAGCCCAAGACTGCAAAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................AAGACTGCAAAACAGA
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ATTCCCCGGGCCCAAGTAGGAGCATCACGAGCCCAAGACTGCAAAACAGA
CT0090889      --> ATTCCCCGGGCCCAAGTAGGAGCATCACGAGCCCAAGACTGCAAAACAGA
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               751    -    801
RU05077        --> AGATTTGGATTGGAGAAGCAATCTGCTCCAACCACTCTATCATCAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- AGATTTGGATTGGAGAAGCAATCTGCTCCAACCACTCTATCATCAGATTC
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> AGATTTGGATTGGAGAAGCAATCTGCTCCAACCACTCTATCA........
CT0090889      --> AGATTTGGATTGGAGAAGCAATCTGCTCCAACCACTCTATCA........
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               801    -    851
RU05077        --> AAGCATGACCAGAAGGCAACACAGTAGGCAATCATTAGAAGCAAGCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- AAGCATGACCAGAAGGCAACACAGTAGGCAATCATTAGAAGCAAGCACCC
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..........AGAAGGCAACACAGTAGGCAATCATTAGAAGCAAGCACCC
ET0044398      --> ................CAACACAGTAGGCAATCATTAGAAGCAAGCACCC
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               851    -    901
RU05077        --> CGGGTAGAAAACTCGGGCCAAAATCTCCCAGATTTCATCAAAGCAATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- CGGGTAGAAAACTCGGGCCAAAATCTCCCAGATTTCATCAAAGCAATTGC
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> CGGGTAGAAAACTTGGGCCAAAATCTCCCAGTTTTCATCAAAGCAATTGC
ET0044398      --> CGGGTAGAAAACTCGGGCCAAAATCTCCCAGATTTCATCAAAGCAATTGC
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               901    -    951
RU05077        --> CAACTGAGCGAGACTAGCACCAGTACAAGAGCTATGAGTCACCAAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- CAACTGAGCGAGACTAGCACCAGTACAAGAGCTATGAGTCACCAAGATGA
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> CAACTGAGCAAGACTAGCACCAGAACAAGAGCTATGAGTCACCAAGATGA
ET0044398      --> CAACTGAGCGAGACTAGCACCAGTACAAGAGCTATGAGTCACCAAGATGA
RH04C33        --> ........................ACAAGAGCTATGAGTCACCAAGATGA
CT0109349      --> ................................................GA
CT0112346      --> ................................................GA
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               951    -   1001
RU05077        --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- TACCACT...........................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
ET0044398      --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
RH04C33        --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
CT0109349      --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
CT0112346      --> TACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
ET0018835      --> ...........AGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAG
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1001   -   1051
RU05077        --> ACACAGAAGCCACAAGCATTCATCAGTCAGATGAGATTAGAGATACTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ACACAGAAGCCACAAGCATTCATCAGTCAG....................
ET0044398      --> ACACAGAAGCCACAAGCATTCATCAGTCAG....................
RH04C33        --> ACACAGAAGCCACAAGCATTCATCAGTCAGATGAGATTAGAGATACTTAC
CT0109349      --> ACACAGAAGCCACAAGCATTCATCAGTCAGATGAGATTAGAGATACTTAC
CT0112346      --> ACACAGAAGCCACAAGCATTCATCAGTCAGATGAGATTAGAGATACTTAC
ET0018835      --> ACACAGAAGCCACAAGCATTCATCAGTCAGATGAGATTAGAGATACTTAC
CT0093611      --> ........................AGTCAGATGAGATTAGAGATACTTAC
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1051   -   1101
RU05077        --> ATGAAGCAGCACAGCCAAAAGCAAAACAGGCCAGCAGTAGGGTTGAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ATGAAGCAGCACAGCCAAAAGCAAAACAGGCCAGCAGTAGGGTTGAGTGA
CT0109349      --> ATGAAGCAGCACAGCCAAAAGCAAAACAGGCCAGCAGTAGGGTTGAGTGA
CT0112346      --> ATGAAGCAGCACAGCCAAAAGCAAAACAGGCCAGCAGTAGGGTTGAGTGA
ET0018835      --> ATGAAGCAGCACAGCCAAAAGCAAAACAGGCCAGCAGTAGGGTTGAGTGA
CT0093611      --> ATGAAGCAGCACAGCCAAAAACGAAACAGGCCAGCAGTAGGGTTGAGTGA
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1101   -   1151
RU05077        --> TGATAGGTTAACAGCAGAAACTGGGAAAGCTTCCTTAGAACAACCAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- .........................................AACCAAGTC
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> TGATAGGTTAACAGCAGAAACTGGGAAAGCTTCCTTAGAACAACCAAGTC
CT0109349      --> TGATAGGTTAACAGCA..................................
CT0112346      --> TGATAGGTTAACAGCA..................................
ET0018835      --> TGATAGGTTAACAGCAGAAACTGGGAAAGCTTCCTTAGAACAACCAAGTC
CT0093611      --> TGATAGGTTAACAGCAGAAACTGGGAAAGCTTCCTTAGAACAACCAAGTC
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1151   -   1201
RU05077        --> CTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- CTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCT
ET0135675      <-- ........................TCTATAGGGACGACTCGCCTTCTCCT
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> CTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCT
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> CTATCTCCGTTCTTGATTCTACATTCTATAGGG.................
CT0093611      --> CTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCT
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1201   -   1251
RU05077        --> GTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGG-CAAAATCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- GTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGGGCAAAATCTGG
ET0135675      <-- GTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGG-CAAAATCTGG
CT0132893      <-- ..........................................AAATCTGG
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> GTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGG-CAAAATCTGG
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> GTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGG-CAAAATCTGG
ET0129428      --> .........ATATCAAATGCCTTTAAAGATGATGGTGGG-CAAAATCTGG
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1251   -   1301
RU05077        --> ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAACAGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAACAGTACA
ET0135675      <-- ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAACAGTACA
CT0132893      <-- ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAATAGTACA
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAATAGT...
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> A.................................................
ET0129428      --> ATGAAGCAGAGTATGGACCAATGGACCTAGGTCTGATATCCAATAGTACA
CT0060670      --> ...................AATGGACCTAGGTCTGATATCCAACAGTACA
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1301   -   1351
RU05077        --> ACGCCCAGTCTTGGTACAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ACGCCCAGTCTTGGTACAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
ET0135675      <-- ACGCCCAGTCTTGGTACAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
CT0132893      <-- ACGCCCAGTCTTGGTGCAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ACGCCCAGTCTTGGTGCAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
CT0060670      --> ACGCCCAGTCTTGGTACAGAGATTGACCATAAAAGGTTAGAGAACCTGAA
ET0129715      --> ..................................GGTTAGAGAACCTGAA
ET0116174      --> .............................................CTGAA
ET0121571      --> .............................................CTGAA
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1351   -   1401
RU05077        --> GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- GCACCTGATTCATAATCATCGACATAT.......................
ET0135675      <-- GCACCTGATTCATAATCATCGACATATGAGCAGCACACtatt........
CT0132893      <-- GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> GCA...............................................
CT0060670      --> GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
ET0129715      --> GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
ET0116174      --> GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
ET0121571      --> GCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCA
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1401   -   1451
RU05077        --> TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGATCACATG
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATG
ET0129715      --> TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATG
ET0116174      --> TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATG
ET0121571      --> TCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATG
CT0082215      --> ............TTACTTTCCTCTGTGACCGCTCAAATCCAGATCACATG
ET0102172      --> ...............................CTCAAATCCAGATCACATG
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1451   -   1501
RU05077        --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- TACATTTCAGATATATTGCTAGCATCAGG.....................
ET0147993      <-- ................TGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
ET0034244      <-- ....................................AGGTATCTCGAATC
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTA.........
ET0129715      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
ET0116174      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
ET0121571      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
CT0082215      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
ET0102172      --> TACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
CT0128772      --> ........AGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
ET0026867      --> ..............ATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATC
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1501   -   1551
RU05077        --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
ET0034244      <-- TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTt
ET0116174      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
ET0121571      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
CT0082215      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
ET0102172      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
CT0128772      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
ET0026867      --> TGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTA
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1551   -   1601
RU05077        --> ATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATAGAACCTTGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATAGAACCTTGGGAT
ET0034244      <-- ATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATAGAACCTTGGGAT
ET0019213      <-- .......................................AACCTTGGGAT
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> aa................................................
ET0116174      --> ATTTGTT...........................................
ET0121571      --> ATTTGTT...........................................
CT0082215      --> ATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATA............
ET0102172      --> ATTTGT-CCTTGCACTGGAAGAAATTAGGGCAGATATAGAACCTTGGGAT
CT0128772      --> ATTTGTTCCTTGC.....................................
ET0026867      --> ATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATAGAACCTTGGGAT
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1601   -   1651
RU05077        --> GATGGAAAGAGATGT-GAAAAGATTCTCCAGTCCCAATCAGAT-GAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- GATGGAAAGAGATGT-GAAAAGATTCTCCAGTCCCAATCAGAT-GAAAAA
ET0034244      <-- GATGGAAAGAGATGT-GAAAAGATTCTCCAGTCCCAATCAGAT-GAAAAA
ET0019213      <-- GATGGAAAGAGATGT-GAAAAGATTCTCCAGTCCCAATCAGAT-GAAAAA
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> GATGGAAAGAGATGTAGAAAAGTTTCTCCAGTCCCAATCAGAT-AGAAAA
CT0128772      --> ..................................................
ET0026867      --> GATGGAAAGAGATGT-GAAAAGATTCTCCAGTCCCAATCAGATAGAAAAA
CT0073830      --> ..............................................AAAA
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1651   -   1701
RU05077        --> ATTCAAA-G--AAAGCTAGT-GTTCGATGT-CGTTAAAGAATTCCTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ATTCAAA-G--AAAGCTAGT-GTTCGATGT-CGTTAAAGAATTCCTAGTT
ET0034244      <-- ATTCAAA-G--AAAGCTAGT-GTTCGATGT-CGTTAAAGAATTCCTAGTT
ET0019213      <-- ATTCAAA-G--AAAGCTAGT-GTTCGATGT-CGTTAAAGAATTCCTAGTT
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ATTCAAA...........................................
CT0128772      --> ..................................................
ET0026867      --> ATTCAAAAG--AAAGCTAGT-GTTCGATGTACGTTAAAGAATTCCTAGTT
CT0073830      --> ATTCAAA-GGAAAAGCTAGTAGTTCGATGT-CGTTAAAGAATTCCTAGTT
ET0096223      --> ..................tT-GTTCGATGT-TGTTAAAGAATTCCTAGTT
CT0046555      --> .........................GATGT-CGTTAAAGAATTCCTAGTT
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1701   -   1751
RU05077        --> -CAAAAATTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- -CAAAA-TTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
ET0034244      <-- -CAAAAATTAGTTGTGGAGAACTCT.........................
ET0019213      <-- -CAAAAATTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
CT0073403      <-- ..................GAACTCTTTCTAAGCAGTGGTTCTCACCAAA-
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ACAAAAATT-GTTGTGGA................................
CT0073830      --> -CAAAAATTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
ET0096223      --> -CAAAAATTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
CT0046555      --> -CAAAAATTAGTTGTGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
ET0104245      --> ..............TGGAGAACTCTTTC-AAGCAGTGGTTCTCACCAAA-
ET0135571      --> ..........................................CACCAAAA
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1751   -   1801
RU05077        --> CAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................  Control
CT0049744      <-- ..................................................  Control
CT0032855      <-- ..................................................  Control
ET0065175      <-- ..................................................  Ethylene
ET0070700      <-- ..................................................  Ethylene
ET0109770      <-- ..................................................  Ethylene
CT0109046      <-- ..................................................  Control
ET0136729      <-- ..................................................  Ethylene
ET0013876      <-- ..................................................  Ethylene
CT0028036      <-- ..................................................  Control
ET0032823      <-- ..................................................  Ethylene
ET0124832      <-- ..................................................  Ethylene
ET0135675      <-- ..................................................  Ethylene
CT0132893      <-- ..................................................  Control
ET0147993      <-- CAAagctaggacaagaaagggaaaacc.......................  Ethylene
ET0034244      <-- ..................................................  Ethylene
ET0019213      <-- C.................................................  Ethylene
CT0073403      <-- CAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Control
CT0056618      <-- ..AGCTG-CAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Control
CT0097744      <-- ..................................................  Control
CT0085981      <-- ..................................................  Control
CT0053332      <-- ..................................................  Control
ET0126049      <-- ..................................................  Ethylene
CT0065135      <-- ..................................................  Control
ET0055769      <-- ..................................................  Ethylene
ET0042729      <-- ..................................................  Ethylene
ET0024441      <-- ..................................................  Ethylene
CT0100223      <-- ..................................................  Control
CT0101048      <-- ..................................................  Control
ET0052981      <-- ..................................................  Ethylene
ET0091319      <-- ..................................................  Ethylene
CT0115633      <-- ..................................................  Control
ET0064834      <-- ..................................................  Ethylene
ET0067428      <-- ..................................................  Ethylene
ET0068333      <-- ..................................................  Ethylene
ET0069458      <-- ..................................................  Ethylene
ET0071054      <-- ..................................................  Ethylene
ET0072705      <-- ..................................................  Ethylene
ET0085833      <-- ..................................................  Ethylene
ET0089783      <-- ..................................................  Ethylene
ET0092773      <-- ..................................................  Ethylene
ET0094215      <-- ..................................................  Ethylene
ET0096445      <-- ..................................................  Ethylene
ET0098315      <-- ..................................................  Ethylene
ET0107264      <-- ..................................................  Ethylene
ET0005724      <-- ..................................................  Ethylene
ET0099599      <-- ..................................................  Ethylene
ET0063976      <-- ..................................................  Ethylene
ET0070448      <-- ..................................................  Ethylene
ET0093227      <-- ..................................................  Ethylene
ET0094372      <-- ..................................................  Ethylene
ET0101360      <-- ..................................................  Ethylene
ET0063224      <-- ..................................................  Ethylene
ET0066171      <-- ..................................................  Ethylene
ET0066996      <-- ..................................................  Ethylene
ET0069949      <-- ..................................................  Ethylene
ET0070226      <-- ..................................................  Ethylene
ET0070521      <-- ..................................................  Ethylene
ET0076405      <-- ..................................................  Ethylene
ET0078195      <-- ..................................................  Ethylene
ET0088774      <-- ..................................................  Ethylene
ET0091964      <-- ..................................................  Ethylene
ET0093443      <-- ..................................................  Ethylene
ET0093983      <-- ..................................................  Ethylene
ET0097344      <-- ..................................................  Ethylene
ET0097848      <-- ..................................................  Ethylene
ET0098066      <-- ..................................................  Ethylene
ET0142641      <-- ..................................................  Ethylene
ET0095477      <-- ..................................................  Ethylene
CT0078128      --> ..................................................  Control
ET0066003      --> ..................................................  Ethylene
ET0067716      --> ..................................................  Ethylene
ET0075122      --> ..................................................  Ethylene
ET0079623      --> ..................................................  Ethylene
ET0101199      --> ..................................................  Ethylene
ET0101209      --> ..................................................  Ethylene
ET0103392      --> ..................................................  Ethylene
ET0106994      --> ..................................................  Ethylene
ET0079040      --> ..................................................  Ethylene
ET0104111      --> ..................................................  Ethylene
ET0100925      --> ..................................................  Ethylene
ET0067521      --> ..................................................  Ethylene
ET0087309      --> ..................................................  Ethylene
ET0087958      --> ..................................................  Ethylene
ET0098181      --> ..................................................  Ethylene
ET0102546      --> ..................................................  Ethylene
ET0070720      --> ..................................................  Ethylene
ET0142772      --> ..................................................  Ethylene
CT0089330      --> ..................................................  Control
CT0090889      --> ..................................................  Control
ET0135905      --> ..................................................  Ethylene
ET0044398      --> ..................................................  Ethylene
RH04C33        --> ..................................................  WaterDS
CT0109349      --> ..................................................  Control
CT0112346      --> ..................................................  Control
ET0018835      --> ..................................................  Ethylene
CT0093611      --> ..................................................  Control
ET0129428      --> ..................................................  Ethylene
CT0060670      --> ..................................................  Control
ET0129715      --> ..................................................  Ethylene
ET0116174      --> ..................................................  Ethylene
ET0121571      --> ..................................................  Ethylene
CT0082215      --> ..................................................  Control
ET0102172      --> ..................................................  Ethylene
CT0128772      --> ..................................................  Control
ET0026867      --> ..................................................  Ethylene
CT0073830      --> CAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Control
ET0096223      --> CAAGTTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Ethylene
CT0046555      --> CAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Control
ET0104245      --> CAAGTTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Ethylene
ET0135571      --> CAAGTTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGT  Ethylene
ET0134687      --> ..................................................  Ethylene
CT0018196      --> ..................................................  Control
ET0122875      --> ..................................................  Ethylene
ET0112995      --> ..................................................  Ethylene
CT0032451      --> ..................................................  Control
CT0027022      --> ..................................................  Control
CT0096985      --> ..................................................  Control
CT0008468      --> ..................................................  Control
CT0011205      --> ..................................................  Control
CT0099547      --> ..................................................  Control
CT0081134      --> ..................................................  Control
CT0065039      --> ..................................................  Control

               1801   -   1851
RU05077        --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
CT0056618      <-- GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
CT0097744      <-- ..TCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
CT0085981      <-- ...CCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGCTAACCTAGA
CT0053332      <-- .............................AACTTGAATGGC-AACCTAGA
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
ET0096223      --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
CT0046555      --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
ET0104245      --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
ET0135571      --> GCTCCCAGGTTGATCAGCTACAAAGACGCAACTTGAATGGC-AACCTAGA
ET0134687      --> .................CTACAAAGACGCAACTTGAATGGC-AACCTAGA
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1851   -   1901
RU05077        --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0056618      <-- TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0097744      <-- TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0085981      <-- TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0053332      <-- TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
ET0126049      <-- ............AAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0065135      <-- ............................tgtTTGGAAAATTTACTATGGA
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
ET0096223      --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0046555      --> TGATGAAGATGAAAGTTTGACAAGCATCT.....................
ET0104245      --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
ET0135571      --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
ET0134687      --> TGATGAAGATGAAAGTTTGACAAGCATCTTGTTGGAAAATTT-C-ATGGA
CT0018196      --> .......................................TTT-C-ATGGA
ET0122875      --> .............................................ATGGA
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1901   -   1951
RU05077        --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- TCAATCACAGAATTGGACAGTGTGTGAT......................
CT0056618      <-- TCAATCAtag........................................
CT0097744      <-- TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
CT0085981      <-- TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
CT0053332      <-- TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
ET0126049      <-- TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
CT0065135      <-- TCAATCACAGAATTGGACAGTGTGTGATG-TGAAATTCCGAGTGTAGTGT
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> T.................................................
ET0096223      --> TCAATCACAGAATTGGA.................................
CT0046555      --> ..................................................
ET0104245      --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTG.
ET0135571      --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
ET0134687      --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
CT0018196      --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
ET0122875      --> TCAATCACAGAATTGGACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
ET0112995      --> ...............GACAGTGTGTGATGGTGAAATTCCGAGTGTAGTGT
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               1951   -   2001
RU05077        --> TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
CT0085981      <-- TGGATGTTGAGCGATTGATCTTTTAAAGACTTGATAACTGAAATTGTGAG
CT0053332      <-- TGGATGTTGAGCGATTGATCTTT-AAAGACATGATAACTGAAATTGTGAG
ET0126049      <-- TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
CT0065135      <-- TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> TGGATGTTGAGCGATTGATCTTT-AA........................
ET0134687      --> TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
CT0018196      --> TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
ET0122875      --> TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
ET0112995      --> TGGATGTTGAGCGATTGATCTTT-AAAGACTTGATAACTGAAATTGTGAG
CT0032451      --> .............................................GTGAG
CT0027022      --> .................................................G
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2001   -   2051
RU05077        --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--GGGGCA-TTGTA-GG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- CAGTGATGCAGTTGACCATGTGGGTTGG......................
CT0085981      <-- CAGTGATGCAGTTGACCATGTGGGTTGG......................
CT0053332      <-- CAGTGATGCAGTTGACCATGCGGGTTGGTCTGGTCGGGTCACTTGTACGG
ET0126049      <-- CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--GGGGCA-TTGTA-GG
CT0065135      <-- CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
CT0018196      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
ET0122875      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
ET0112995      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
CT0032451      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--GGGGCA-TTGTA-GG
CT0027022      --> CAGTGATGCAGTTGACCATGTGGGTTGGTCTGG--TGGGCA-TTGTA-GG
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2051   -   2101
RU05077        --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- CAACTG............................................
ET0126049      <-- CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
CT0065135      <-- CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAA....
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACA..................
ET0122875      --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
ET0112995      --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
CT0032451      --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
CT0027022      --> CAACTGTTTTCCAAGAAGGGGCTCTGGTAACATTGTTTTTCAAAAACCTG
CT0096985      --> ......................................TTCAAAAACCTG
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2101   -   2151
RU05077        --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- AATGGTATAAa.......................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGT..............
ET0112995      --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
CT0032451      --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
CT0027022      --> AATGGTCTAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
CT0096985      --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
CT0008468      --> AATGGTATAAGAAATATAGTTTGAGAAGCATCTGGTCAGTAGCTTTCATA
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2151   -   2201
RU05077        --> CATCGACCAAGGGAGTGGGACTGATTGCAACAGTGAAACTCAGCCTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> CATCGA............................................
CT0032451      --> CATCGACCAAGGGAGTGGGACTGATTGCAACAGTGAAACTCAGCCTGTGG
CT0027022      --> CATCGACCAAGGGAGTGGGACTGATTGCAACAGTGAAACTCAGCCTGTGG
CT0096985      --> CATCGACCAAGGGAGTGGGACTGATTGCAACAGTGAAACTCAGCCTGTGG
CT0008468      --> CATCGACCAAGGGAGTGGGACTGATTGCAACAGTGAAACTCAGCCTGTGG
CT0011205      --> ......................................CTCAGCCTGTGG
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2201   -   2251
RU05077        --> TTTTTGTATGTTGAGCAGTTCATACTTATAGATCAAACCGTGAGGGGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ........................CTTATAGATCAAACCGTGAGGGGTGA
ET0042729      <-- ..................................................
ET0024441      <-- ..................................................
CT0100223      <-- ..................................................
CT0101048      <-- ..................................................
ET0052981      <-- ..................................................
ET0091319      <-- ..................................................
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> TTTTTGTATGTTGAGCAGTTGATACTTATAGATCAAACCGT.........
CT0027022      --> TTTTTGTATGTTGAGCAGTTGATACTTATAGATCAAACCGTGAGGG....
CT0096985      --> TTTTTGTATGTTGAGCAGTTGATACTTATAGATCAAACCGTGAGGGGTGA
CT0008468      --> TTTTTGTATGTTGAGCAGTTGATACTTATAGATCAAACCGTGAGGGGTGA
CT0011205      --> TTTTTGTATGTTGAGCAGTTGATACTTATAGATCAAACCGTGAGGGGTGA
CT0099547      --> ....................................ACCGTGAGGGGTGA
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2251   -   2301
RU05077        --> TTGTAGGCAATTATTCTCTGCATACGGACTTTGGTAATAATATAGAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- TTGTAGGCAATTATTCTCTGCATACGGACTTTGGTAATAATATAGAATAT
ET0042729      <-- ........AATTATTCTCTGCATACGGACTTTGGTAA---TATAGAATAT
ET0024441      <-- ...........TATTCTCTGCATACGGACTTTGGTAA---TATAGAATAT
CT0100223      <-- ....................CATACGGACTTTGGTAATAATATAGAATAT
CT0101048      <-- ....................CATACGGACTTTGGTAATAATATAGAATAT
ET0052981      <-- ......................................AATATAGAATAT
ET0091319      <-- .................................................T
CT0115633      <-- ..................................................
ET0064834      <-- ..................................................
ET0067428      <-- ..................................................
ET0068333      <-- ..................................................
ET0069458      <-- ..................................................
ET0071054      <-- ..................................................
ET0072705      <-- ..................................................
ET0085833      <-- ..................................................
ET0089783      <-- ..................................................
ET0092773      <-- ..................................................
ET0094215      <-- ..................................................
ET0096445      <-- ..................................................
ET0098315      <-- ..................................................
ET0107264      <-- ..................................................
ET0005724      <-- ..................................................
ET0099599      <-- ..................................................
ET0063976      <-- ..................................................
ET0070448      <-- ..................................................
ET0093227      <-- ..................................................
ET0094372      <-- ..................................................
ET0101360      <-- ..................................................
ET0063224      <-- ..................................................
ET0066171      <-- ..................................................
ET0066996      <-- ..................................................
ET0069949      <-- ..................................................
ET0070226      <-- ..................................................
ET0070521      <-- ..................................................
ET0076405      <-- ..................................................
ET0078195      <-- ..................................................
ET0088774      <-- ..................................................
ET0091964      <-- ..................................................
ET0093443      <-- ..................................................
ET0093983      <-- ..................................................
ET0097344      <-- ..................................................
ET0097848      <-- ..................................................
ET0098066      <-- ..................................................
ET0142641      <-- ..................................................
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> TTGTAGGCAATTATTCTCTGCATACGGACTTTGGTAATAATATAGAATAT
CT0008468      --> TTGTAGGCAATTATTCTCTGCATACG........................
CT0011205      --> TTGTAGGCAATTATTCTCTGCATACGGACTTTGGTAATAATATAGAATAT
CT0099547      --> TTGTAGGCAATTATTCTCTGCATACGGACTTTGGTAATAATATAGAATAT
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2301   -   2351
RU05077        --> ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGCAGGG-ACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGG-ACC
ET0042729      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGC-GGG-ACC
ET0024441      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGCGGGG-ACC
CT0100223      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGG-ACC
CT0101048      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGG-ACC
ET0052981      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGGGACC
ET0091319      <-- ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGG-ACC
CT0115633      <-- .............................AAGGGGAGGGGGC-GGG-ACC
ET0064834      <-- .............................AAGGGGAGGGGGGAGGGGACC
ET0067428      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0068333      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0069458      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0071054      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0072705      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0085833      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0089783      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0092773      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0094215      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0096445      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0098315      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0107264      <-- ..............................AGGGGAGGGGGGAGGGGACC
ET0005724      <-- ..........................................cGGG-ACC
ET0099599      <-- ...........................................GGG-ACC
ET0063976      <-- .............................................G-ACC
ET0070448      <-- .............................................G-ACC
ET0093227      <-- .............................................G-ACC
ET0094372      <-- .............................................G-ACC
ET0101360      <-- .............................................G-ACC
ET0063224      <-- ...............................................ACC
ET0066171      <-- ...............................................ACC
ET0066996      <-- ...............................................ACC
ET0069949      <-- ...............................................ACC
ET0070226      <-- ...............................................ACC
ET0070521      <-- ...............................................ACC
ET0076405      <-- ...............................................ACC
ET0078195      <-- ...............................................ACC
ET0088774      <-- ...............................................ACC
ET0091964      <-- ...............................................ACC
ET0093443      <-- ...............................................ACC
ET0093983      <-- ...............................................ACC
ET0097344      <-- ...............................................ACC
ET0097848      <-- ...............................................ACC
ET0098066      <-- ...............................................ACC
ET0142641      <-- ...............................................ACC
ET0095477      <-- ..................................................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ATTCTCATGCAGAATTTGTTGT............................
CT0008468      --> ..................................................
CT0011205      --> ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGG................
CT0099547      --> ATTCTCATGCAGAATTTGTTGTGAGAGAGAAGGGGAGGGGGGAGGG-ACC
CT0081134      --> ..................................................
CT0065039      --> ..................................................

               2351   -   2401
RU05077        --> ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0042729      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0024441      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTTTATCTTCTCTAATC
CT0100223      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
CT0101048      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0052981      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0091319      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
CT0115633      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0064834      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0067428      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0068333      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0069458      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0071054      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0072705      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0085833      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0089783      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0092773      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0094215      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0096445      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0098315      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0107264      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0005724      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0099599      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0063976      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0070448      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0093227      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0094372      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0101360      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0063224      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTTTATCTTCTCTAATC
ET0066171      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0066996      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0069949      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0070226      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0070521      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0076405      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0078195      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0088774      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0091964      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0093443      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0093983      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0097344      <-- ATTTTAATTTTGACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0097848      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0098066      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0142641      <-- ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
ET0095477      <-- .......TTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ATTTTAATTT-GACTTCCATTACTATCTTTTGGTTT-ATCTTCTCTAATC
CT0081134      --> .......................................CTTCTCTAATC
CT0065039      --> ..................................................

               2401   -   2451
RU05077        --> ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ACAATTACTGGGTTACCGTTTAGCT.........................
ET0042729      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0024441      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
CT0100223      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
CT0101048      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0052981      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0091319      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
CT0115633      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0064834      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0067428      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0068333      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0069458      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0071054      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0072705      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0085833      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0089783      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0092773      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0094215      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0096445      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0098315      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0107264      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0005724      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0099599      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0063976      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0070448      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0093227      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0094372      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0101360      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0063224      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0066171      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0066996      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0069949      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0070226      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0070521      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0076405      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0078195      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0088774      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0091964      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0093443      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0093983      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0097344      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0097848      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0098066      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0142641      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
ET0095477      <-- ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAt................
CT0081134      --> ACAATTACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT
CT0065039      --> .....TACTGGGTTACCGTTTAGCTCCTCTCTAACATGTAAATCTTTGAT

               2451   -   2501
RU05077        --> AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- AG----AGGTGATACATCTGTAATTTGAACTACATTTGATA-TT-A-T-G
ET0024441      <-- AG----AGGTGATACATCTGTAATTTGAACTACATTTGATA-TT-A-T-G
CT0100223      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
CT0101048      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0052981      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATAATTAA-T-G
ET0091319      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
CT0115633      <-- AG----AGGTGATACATCTGTAATTTGAACTACATTTGATA-TT-A-T-G
ET0064834      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0067428      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0068333      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0069458      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0071054      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0072705      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0085833      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0089783      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-AATAG
ET0092773      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0094215      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0096445      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0098315      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0107264      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-T--A-T-G
ET0005724      <-- AG----AGGTGATACATCTGTAATTTGAACTACATTTGATA-TT-A-T-G
ET0099599      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0063976      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0070448      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0093227      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0094372      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0101360      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0063224      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0066171      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0066996      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0069949      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TTTA-T-G
ET0070226      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0070521      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0076405      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0078195      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0088774      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0091964      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0093443      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0093983      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0097344      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0097848      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0098066      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0142641      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
ET0095477      <-- AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> AGAGGCTAATGATACATCTGTAACTTGAACT...................
CT0065039      --> AGAGGCTAATGATACATCTGTAACTTGAACTACATTTGATA-TT-A-T-G

               2501   -   2551
RU05077        --> TTAAAA-GGTTTATGGGGCATTTTCACAGGAAAGGGCATTTTGTTTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0026203      <-- ..................................................
CT0049744      <-- ..................................................
CT0032855      <-- ..................................................
ET0065175      <-- ..................................................
ET0070700      <-- ..................................................
ET0109770      <-- ..................................................
CT0109046      <-- ..................................................
ET0136729      <-- ..................................................
ET0013876      <-- ..................................................
CT0028036      <-- ..................................................
ET0032823      <-- ..................................................
ET0124832      <-- ..................................................
ET0135675      <-- ..................................................
CT0132893      <-- ..................................................
ET0147993      <-- ..................................................
ET0034244      <-- ..................................................
ET0019213      <-- ..................................................
CT0073403      <-- ..................................................
CT0056618      <-- ..................................................
CT0097744      <-- ..................................................
CT0085981      <-- ..................................................
CT0053332      <-- ..................................................
ET0126049      <-- ..................................................
CT0065135      <-- ..................................................
ET0055769      <-- ..................................................
ET0042729      <-- TTAAAA-GGTTTATGGGGCATTTTCACAGG....................
ET0024441      <-- TTAAAA-GGTTTATGGGGCATTTTCACAGG....................
CT0100223      <-- TTAAAA-GGTTTATGGGGCATTTTCACAGG....................
CT0101048      <-- TTAAAA-GGTTTATGGGGCATTTTCACAGG....................
ET0052981      <-- TTAAAAAGGTTTAataggggacaattttacaacaaagg............
ET0091319      <-- TTAAAA-GGCTTATGGGGCATTTTCACAGGAAAGGGCATTTTGTTTTACA
CT0115633      <-- TTAAAA-GGTTTATGGGGCATTTTCACAGG....................
ET0064834      <-- TTAAAA-GGTTTATGGGGC...............................
ET0067428      <-- TTAAAA-GGTTTATGGGGC...............................
ET0068333      <-- TTAAAA-GGTTTATGGGGC...............................
ET0069458      <-- TTAAAA-GGTTTATGGGGC...............................
ET0071054      <-- TTAAAA-GGTTTATGGGGC...............................
ET0072705      <-- TTAAAA-GGTTTATGGGGC...............................
ET0085833      <-- TTAAAA-GGTTTATGGGGC...............................
ET0089783      <-- TTAAAAAGGTTTAataggggac............................
ET0092773      <-- TTAAAA-GGTTTATGGGGC...............................
ET0094215      <-- TTAAAA-GGTTTATTGGGgct.............................
ET0096445      <-- TTAAAA-GGTTTATGGGGC...............................
ET0098315      <-- TTAAAA-GGTTTATGGGGC...............................
ET0107264      <-- TTAAAA-GGTTTATGGGGgc..............................
ET0005724      <-- TTAAAA-GGTTTATGGGGCATTTTCAC.......................
ET0099599      <-- TTAAAA-GGTTTATGGGGC...............................
ET0063976      <-- TTAAAA-GGTTTATGGGGC...............................
ET0070448      <-- TTAAAA-GGTTTATGGGGC...............................
ET0093227      <-- TTAAAA-GGTTTATGGGGC...............................
ET0094372      <-- TTAAAA-GGTTTtattggggtct...........................
ET0101360      <-- TTAAAA-GGTTTATGGGGC...............................
ET0063224      <-- TTAAAA-GGTTTATGGGGC...............................
ET0066171      <-- TTAAAA-GGTTTATGGGGC...............................
ET0066996      <-- TTAAAA-GGTTTATGGGGC...............................
ET0069949      <-- TTAAAA-GGTTTATGGGGC...............................
ET0070226      <-- TTAAAA-GGTTTATGGGGC...............................
ET0070521      <-- TTAAAA-GGTTTATGGGGC...............................
ET0076405      <-- TTAAAA-GGTTTATGGGGC...............................
ET0078195      <-- TTAAAA-GGTTTATGGGGC...............................
ET0088774      <-- TTAAAA-GGTTTATGGGGC...............................
ET0091964      <-- TTAAAA-GGTTTATGGGGC...............................
ET0093443      <-- TTAAAA-GGTTTATGGGGC...............................
ET0093983      <-- TTAAAA-GGTTTATGGGGC...............................
ET0097344      <-- TTAAAA-GGTTTATGGGGC...............................
ET0097848      <-- TTAAAA-GGTTTATGGGGC...............................
ET0098066      <-- TTAAAA-GGTTTATAGGGgac.............................
ET0142641      <-- TTAAAAAGGTTTAataggggac............................
ET0095477      <-- TTAAAA-GGTTTATGGGGC...............................
CT0078128      --> ..................................................
ET0066003      --> ..................................................
ET0067716      --> ..................................................
ET0075122      --> ..................................................
ET0079623      --> ..................................................
ET0101199      --> ..................................................
ET0101209      --> ..................................................
ET0103392      --> ..................................................
ET0106994      --> ..................................................
ET0079040      --> ..................................................
ET0104111      --> ..................................................
ET0100925      --> ..................................................
ET0067521      --> ..................................................
ET0087309      --> ..................................................
ET0087958      --> ..................................................
ET0098181      --> ..................................................
ET0102546      --> ..................................................
ET0070720      --> ..................................................
ET0142772      --> ..................................................
CT0089330      --> ..................................................
CT0090889      --> ..................................................
ET0135905      --> ..................................................
ET0044398      --> ..................................................
RH04C33        --> ..................................................
CT0109349      --> ..................................................
CT0112346      --> ..................................................
ET0018835      --> ..................................................
CT0093611      --> ..................................................
ET0129428      --> ..................................................
CT0060670      --> ..................................................
ET0129715      --> ..................................................
ET0116174      --> ..................................................
ET0121571      --> ..................................................
CT0082215      --> ..................................................
ET0102172      --> ..................................................
CT0128772      --> ..................................................
ET0026867      --> ..................................................
CT0073830      --> ..................................................
ET0096223      --> ..................................................
CT0046555      --> ..................................................
ET0104245      --> ..................................................
ET0135571      --> ..................................................
ET0134687      --> ..................................................
CT0018196      --> ..................................................
ET0122875      --> ..................................................
ET0112995      --> ..................................................
CT0032451      --> ..................................................
CT0027022      --> ..................................................
CT0096985      --> ..................................................
CT0008468      --> ..................................................
CT0011205      --> ..................................................
CT0099547      --> ..................................................
CT0081134      --> ..................................................
CT0065039      --> TTAAAA-GGTTTATGGGGCATTTTCAC.......................

               2551   -   2601
RU05077        --> TTC
                   ~~~
CT0026203      <-- ...
CT0049744      <-- ...
CT0032855      <-- ...
ET0065175      <-- ...
ET0070700      <-- ...
ET0109770      <-- ...
CT0109046      <-- ...
ET0136729      <-- ...
ET0013876      <-- ...
CT0028036      <-- ...
ET0032823      <-- ...
ET0124832      <-- ...
ET0135675      <-- ...
CT0132893      <-- ...
ET0147993      <-- ...
ET0034244      <-- ...
ET0019213      <-- ...
CT0073403      <-- ...
CT0056618      <-- ...
CT0097744      <-- ...
CT0085981      <-- ...
CT0053332      <-- ...
ET0126049      <-- ...
CT0065135      <-- ...
ET0055769      <-- ...
ET0042729      <-- ...
ET0024441      <-- ...
CT0100223      <-- ...
CT0101048      <-- ...
ET0052981      <-- ...
ET0091319      <-- TTC
CT0115633      <-- ...
ET0064834      <-- ...
ET0067428      <-- ...
ET0068333      <-- ...
ET0069458      <-- ...
ET0071054      <-- ...
ET0072705      <-- ...
ET0085833      <-- ...
ET0089783      <-- ...
ET0092773      <-- ...
ET0094215      <-- ...
ET0096445      <-- ...
ET0098315      <-- ...
ET0107264      <-- ...
ET0005724      <-- ...
ET0099599      <-- ...
ET0063976      <-- ...
ET0070448      <-- ...
ET0093227      <-- ...
ET0094372      <-- ...
ET0101360      <-- ...
ET0063224      <-- ...
ET0066171      <-- ...
ET0066996      <-- ...
ET0069949      <-- ...
ET0070226      <-- ...
ET0070521      <-- ...
ET0076405      <-- ...
ET0078195      <-- ...
ET0088774      <-- ...
ET0091964      <-- ...
ET0093443      <-- ...
ET0093983      <-- ...
ET0097344      <-- ...
ET0097848      <-- ...
ET0098066      <-- ...
ET0142641      <-- ...
ET0095477      <-- ...
CT0078128      --> ...
ET0066003      --> ...
ET0067716      --> ...
ET0075122      --> ...
ET0079623      --> ...
ET0101199      --> ...
ET0101209      --> ...
ET0103392      --> ...
ET0106994      --> ...
ET0079040      --> ...
ET0104111      --> ...
ET0100925      --> ...
ET0067521      --> ...
ET0087309      --> ...
ET0087958      --> ...
ET0098181      --> ...
ET0102546      --> ...
ET0070720      --> ...
ET0142772      --> ...
CT0089330      --> ...
CT0090889      --> ...
ET0135905      --> ...
ET0044398      --> ...
RH04C33        --> ...
CT0109349      --> ...
CT0112346      --> ...
ET0018835      --> ...
CT0093611      --> ...
ET0129428      --> ...
CT0060670      --> ...
ET0129715      --> ...
ET0116174      --> ...
ET0121571      --> ...
CT0082215      --> ...
ET0102172      --> ...
CT0128772      --> ...
ET0026867      --> ...
CT0073830      --> ...
ET0096223      --> ...
CT0046555      --> ...
ET0104245      --> ...
ET0135571      --> ...
ET0134687      --> ...
CT0018196      --> ...
ET0122875      --> ...
ET0112995      --> ...
CT0032451      --> ...
CT0027022      --> ...
CT0096985      --> ...
CT0008468      --> ...
CT0011205      --> ...
CT0099547      --> ...
CT0081134      --> ...
CT0065039      --> ...