SNPs of unigene RU05159
               12     -     62
RU05159        --> GGGGTTTTAGGTTTTTC-AGCGAGACGACGCAATCTCTCAATCTCTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ............TTTTC-AGCGAGACGACGCAATCTCCCAATCTCTTTTG
ET0024354      <-- ....................................ccCAATCTCTTTTG
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> GGGGTTTTAGGGTTTTC-AGCGAGACGACGCAATCTCCCAATCTCTTTTG
CT0117501      --> .......TAGGGTTTTC-AGCGAGACGACGCAATCTCCCAATCTCTTTTG
ET0057246      --> .........GGTTTTTCTAGCGAGACGACGCAATCTCCCAATCTCTTTTG
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               62     -    112
RU05159        --> AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
ET0024354      <-- AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
CT0117501      --> AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
ET0057246      --> AACTCTTCAAATCTAGCCATGACTGCTCAGACTCAGGAAGAACTCCTCGC
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               112    -    162
RU05159        --> CGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- CGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
ET0024354      <-- CGCCCATCTCGAACAGCAAACCAcaatcacagga................
CT0121553      <-- .........CGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> CGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
CT0117501      --> CGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
ET0057246      --> CGCCCATCTCGAACAGCAAACCATCGATCCTGATCAGCCTACGGTTGAAG
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               162    -    212
RU05159        --> AGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- AGGAAGATGACGATGATGcgatt...........................
ET0024354      <-- ..................................................
CT0121553      <-- AGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGAC
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> AGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGAC
CT0117501      --> AGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGAC
ET0057246      --> AGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGAC
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               212    -    262
RU05159        --> GATGAAGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- GATGAAGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAG
ET0047762      <-- .....AGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAG
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> GATGAAGTCGAGGGACAAGAgtagggggaa....................
CT0117501      --> GATGAAGTCGAGGGACAAGATGGGGAAGCGAG..................
ET0057246      --> GATGAAGTCGAGGGACAAGATGGGGAA.......................
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               262    -    312
RU05159        --> TAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- TAGAAGTG..........................................
ET0047762      <-- TAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAAT
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> .................................................T
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               312    -    362
RU05159        --> CTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- CTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTA
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> CTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTA
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               362    -    412
RU05159        --> TTTGTGATATCGAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- TTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTA
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> TTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTA
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               412    -    462
RU05159        --> TGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCGCAACTGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- TGTTATCTTTGGTGAGGCAAAGATTGAGG.....................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> TGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCACAACTGCAGA
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               462    -    512
RU05159        --> CTCAGGCTGCAGAGCAGTTTAAAgCTCCTGATCTCAGTCATGTGATTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- .........................TCCTGATCTCAGTCATGTGATTTCC
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> CTCAGGCTGCAGAGCAGTTTAAA...........................
ET0014972      --> ........................CTCCTGATCTCAGTCATGTGATTTCC
ET0066474      --> ........................................TGTGATTTCC
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               512    -    562
RU05159        --> AAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- AAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGAC
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> AAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGAC
ET0066474      --> AAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGAC
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               562    -    612
RU05159        --> CGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- CGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTAT
CT0051264      <-- ..................................................
CT0058515      <-- ..................................................
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> CGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTAT
ET0066474      --> CGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTAT
ET0046555      --> ........................GTTGGTGATGACACAAGCAGGAGTAT
ET0042998      --> .......................gtTTGGTGATGACACAAGCAGGAGTAT

               612    -    662
RU05159        --> CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
CT0051264      <-- .TAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
CT0058515      <-- ................AAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
CT0047875      <-- ..................................................
CT0052471      <-- ..................................................
CT0053775      <-- ..................................................
CT0067270      <-- ..................................................
CT0058332      <-- ..................................................
CT0068369      <-- ..................................................
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCTGATGGAGACATTTGT
ET0066474      --> CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
ET0046555      --> CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT
ET0042998      --> CTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATT-GT

               662    -    712
RU05159        --> TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- TTCTGC............................................
CT0051264      <-- TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT
CT0058515      <-- TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT
CT0047875      <-- ..........................................TGTTTTCT
CT0052471      <-- ..........................................TGTTTTCT
CT0053775      <-- ..........................................TGTTTTCT
CT0067270      <-- ..........................................TGTTTTCT
CT0058332      <-- ...........................................GTTTTCT
CT0068369      <-- .............................................TTTCT
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTT..............
ET0066474      --> TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT
ET0046555      --> TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT
ET0042998      --> TTCTGCTATCATGGAACTTACCAACTGAAGTGTCTTTAGAAATGTTTTCT

               712    -    762
RU05159        --> AGTATGTTATCGCTTATTATGCTTGT-TTTTTTTTATGGTTTTTT-C-AG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................  Ethylene
ET0024354      <-- ..................................................  Ethylene
CT0121553      <-- ..................................................  Control
ET0047762      <-- ..................................................  Ethylene
ET0032146      <-- ..................................................  Ethylene
CT0051264      <-- AGTATGTTATCGCTTATTATGCTT..........................  Control
CT0058515      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTT-ATGGTTTTTT-C-AG  Control
CT0047875      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTTTATGGTTTTTT-C-AG  Control
CT0052471      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTTTATGGTTTTTT-C-AG  Control
CT0053775      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTTTATGGTTTTTT-CTAG  Control
CT0067270      <-- AGTATGTTATCGCTTATTATGCTTGTCTTTTTTTTATGGTTTTTTTC-AG  Control
CT0058332      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTTTATGGTTTTTT-C-AG  Control
CT0068369      <-- AGTATGTTATCGCTTATTATGCTTGT-CTTTTTTTATGGTTTTTT-C-AG  Control
ET0056141      <-- ..................................................  Ethylene
CT0093610      --> ..................................................  Control
CT0117501      --> ..................................................  Control
ET0057246      --> ..................................................  Ethylene
CT0039562      --> ..................................................  Control
ET0014972      --> ..................................................  Ethylene
ET0066474      --> AGTATGTTATCGCTTATTATG.............................  Ethylene
ET0046555      --> AGTATGTTATCGCTTATTATGCTTGT-TCTTTTTTATGGTTTTTT-C-AG  Ethylene
ET0042998      --> AGTATGTTATCGCTTATTATGCTTGT-TCTTTTTTATGGTTTTTT-C-AG  Ethylene

               762    -    812
RU05159        --> ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0047875      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0052471      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0053775      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0067270      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0058332      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
CT0068369      <-- ATCATGTGTGCTGG-AATTTGGTCCGGATTATTTCCAATTTTAGTCAAGT
ET0056141      <-- ..................................................
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ATCATGTGTGCTGG....................................
ET0042998      --> ATCATGTGTGCTGGTAATTTGG............................

               812    -    862
RU05159        --> TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0047875      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0052471      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0053775      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0067270      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0058332      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0068369      <-- TATTCAGTCTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
ET0056141      <-- ........CTTTTGCTCAACCTTGTTGTATCAGTGACAAACTGAGAATTG
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               862    -    912
RU05159        --> CTTAAACTGAATAACTTGACTAAAATTGGAAATAATCCGGACCAACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ..................................................
ET0024354      <-- ..................................................
CT0121553      <-- ..................................................
ET0047762      <-- ..................................................
ET0032146      <-- ..................................................
CT0051264      <-- ..................................................
CT0058515      <-- CTTAAACTaatcaagtttttccaaaaaaaaa...................
CT0047875      <-- CTTAAA............................................
CT0052471      <-- CTTAAA............................................
CT0053775      <-- CTTAAA............................................
CT0067270      <-- CTTAAA............................................
CT0058332      <-- CTTAAACTaactcaagtttttc............................
CT0068369      <-- CTTAAAactaaatcaaagttttttc.........................
ET0056141      <-- CTTAAACTGAATAACTTGACTAAAATTGGAAATAATCCGGACCAACTTCC
CT0093610      --> ..................................................
CT0117501      --> ..................................................
ET0057246      --> ..................................................
CT0039562      --> ..................................................
ET0014972      --> ..................................................
ET0066474      --> ..................................................
ET0046555      --> ..................................................
ET0042998      --> ..................................................

               912    -    962
RU05159        --> AGCACACATGATCTGAGAAAACCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0145049      <-- ...........................
ET0024354      <-- ...........................
CT0121553      <-- ...........................
ET0047762      <-- ...........................
ET0032146      <-- ...........................
CT0051264      <-- ...........................
CT0058515      <-- ...........................
CT0047875      <-- ...........................
CT0052471      <-- ...........................
CT0053775      <-- ...........................
CT0067270      <-- ...........................
CT0058332      <-- ...........................
CT0068369      <-- ...........................
ET0056141      <-- AGCACACATGATCTGAGAAAACCACAA
CT0093610      --> ...........................
CT0117501      --> ...........................
ET0057246      --> ...........................
CT0039562      --> ...........................
ET0014972      --> ...........................
ET0066474      --> ...........................
ET0046555      --> ...........................
ET0042998      --> ...........................