SNPs of unigene RU05168
               1      -     51
RU05168        --> CGTACACCAGAAATTAAAAATAGATCAAAATACATTACTAAAATCCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ................AAAATAGATCAAAATACATTACTAAAATCCATAC
CT0133093      <-- ................AAAATAGATCAAAATACATTACTAAAATCCATAC
ET0034639      <-- .............tttAAAATAGATCAAAATACATTACTAAAATCCATAC
CT0005933      <-- ..............aaaattTAGATCAAAATACATTACTAAAATCCATAC
ET0036517      <-- ..............aaaattTAGATCAAAATACATTACTAAAATCCATAC
ET0041879      <-- .............aaaatttTAGATCAAAATACATTACTAAAATCCATAC
CT0049360      <-- ...................tttaATCAAAATACATTACTAAAATCCATAC
CT0009780      <-- ..............................TACATTACTAAAATCCATAC
CT0018776      <-- ..............................TACATTACTAAAATCCATAC
CT0033607      <-- ..............................TACATTACTAAAATCCATAC
CT0053808      <-- ..............................TACATTACTAAAATCCATAC
CT0134173      <-- ..............................TACATTACTAAAATCCATAC
CT0026429      <-- ....................................ACTAAAATCCATAC
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> CGTACACCAGAAATTTAAAATAGATCAAAATACATTACTAAAATCCATAC
CT0028876      --> CGTACACCAGAAATTTAAAATAGATCAAAATACATTACTAAAATCCATAC
CT0074601      --> CGTACACCAGAAATTTAAAATAGATCAAAATACATTACTAAAATCCATAC
CT0005984      --> ........ttttttttAAAATAGATCAAAATACATTACTAAAATCCATAC
CT0092933      --> ................AAAATAGATCAAAATACATTACTAAAATCCATAC
ET0004884      --> ................AAAATAGATCAAAATACAATACTAAAATCCATAC
ET0057923      --> ...........aaaaataagaatacaAAAATACATTACTAAAATCCATAC
CT0016377      --> ................................................AC
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               51     -    101
RU05168        --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0133093      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
ET0034639      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0005933      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
ET0036517      <-- TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
ET0041879      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0049360      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0009780      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0018776      <-- TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0033607      <-- TCTCAAACATAAA-GTAGTAATGGTTCCAacaga................
CT0053808      <-- TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0134173      <-- TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0026429      <-- TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0028876      --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0074601      --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0005984      --> TCTCAAACATAAA-GTAGCAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0092933      --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
ET0004884      --> TCTCAAACATAAA-GTAGAAATGGTTCCATCGAAGTGCCATCAAATACTA
ET0057923      --> TCTCAAACATAAAAGTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0016377      --> TCTCAAACATAAA-GTAGTAATGGTTCCATCGAAGTGCCATCAAATACTA
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               101    -    151
RU05168        --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0133093      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTT.....................
ET0034639      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0005933      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
ET0036517      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
ET0041879      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0049360      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0009780      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0018776      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACT.....
CT0033607      <-- ..................................................
CT0053808      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACT.....
CT0134173      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTT.....................
CT0026429      <-- CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0010220      <-- ......AAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0062705      <-- ..................taAAAGAGTTTAATTGTGAACAAAACTTAA-C
CT0058337      <-- ......................AGAGTTTAATTGTGAACAAAACTTAA-C
CT0080051      <-- .....................................ACAAAACTTAA-C
CT0081552      <-- .....................................ACAAAACTTAA-C
CT0082494      <-- .....................................ACAAAACTTAA-C
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0028876      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0074601      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0005984      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0092933      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
ET0004884      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGTGAACAAAACTTAA-C
ET0057923      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0016377      --> CAAAGGAAAACTGGAAAGGTAAAGAGTTTAATTGAGAACAAAACTTAA-C
CT0103495      --> ..................................gaAACAAAACTTAAAC
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               151    -    201
RU05168        --> -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAAAAAAGGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- -A................................................
CT0133093      <-- ..................................................
ET0034639      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAGAAAAGGTTTA
CT0005933      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAGAAAAG.....
ET0036517      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
ET0041879      <-- -AACATCTACTCCAAGTTGGTTTTGCAAAAAGAGAATTAGAAAAGGTTTA
CT0049360      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAGAAAAGGTTTA
CT0009780      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAGAAAAG.....
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- -AACATCTACTCCAAGTTGGTTT-GC........................
CT0010220      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0062705      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAAAAAAGGTTTA
CT0058337      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAAAAAAGGTTTA
CT0080051      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0081552      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0082494      <-- -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0127947      <-- .....................................aAAAAAAGGTTTA
ET0012735      <-- ...............................................TTA
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> -AACATCTACTCCAAGTTGGT.............................
CT0028876      --> -AACATCTACTCCAAGTTGGT.............................
CT0074601      --> -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0005984      --> -AACATCTACTCCAAGTTGGTTT-G.........................
CT0092933      --> -AA...............................................
ET0004884      --> -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAAAAAAGGTTTA
ET0057923      --> -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0016377      --> -AACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
CT0103495      --> AAACATCTACTCCAAGTTGGTTT-GCAAAAAGAGAATTAAAAAAGGTTTA
CT0012003      --> ......tcctgtgattgTGGTTT-GCAAAAAGAGAAATAGAAAAGGTTTA
ET0081621      --> ..................GGTTT-GCAAAAAGAGAATTAAAAAAGGTTTA
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               201    -    251
RU05168        --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCT-CAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTtc.....
CT0005933      <-- ..................................................
ET0036517      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-G............
ET0041879      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGGGTCATTTTGCTCCTtcaaaac
CT0049360      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0062705      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0058337      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0080051      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0081552      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0082494      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0127947      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
ET0012735      <-- GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0070297      <-- .............................................AAACC
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCT-CAAACC
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
ET0057923      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0016377      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTc..............
CT0103495      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0012003      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
ET0081621      --> GAGCTTGTCCTCAAAGTCAGAAAGCGGGG-TCATTT-GCTCCTTCAAACC
CT0053656      --> ............................................CAAACC
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               251    -    301
RU05168        --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0062705      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0058337      <-- CTTCCTCTTACGGATGTCTTTGAACCAGCTGAGATGCCTGGGAACCA...
CT0080051      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAA......
CT0081552      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAA......
CT0082494      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAA......
CT0127947      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0012735      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0070297      <-- CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0020998      <-- .........ACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0025256      <-- .........ACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0034466      <-- .........ACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> CTTCCTCTTACGGATGTCTT-GAACCAGC.....................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAG..
ET0057923      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGA.......
CT0016377      --> ..................................................
CT0103495      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0012003      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
ET0081621      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0053656      --> CTTCCTCTTACGGATGTCTT-GAACCAGCTGAGATGCCTGGGAACCAGCC
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               301    -    351
RU05168        --> TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0062705      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- TCCAACGGATCAGAAGACATCATCTCCCA.....................
ET0012735      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0070297      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
ET0020998      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
ET0025256      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
ET0034466      <-- TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
ET0032660      <-- ....................CATCTCCCAATGATCAAACACACACTGGGG
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> TCCAACGGATCAGAAGACATCATCTCCCAATGATCA..............
CT0012003      --> TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
ET0081621      --> TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0053656      --> TCCAACGGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0028277      --> ......GGATCAGAAGACATCATCTCCCAATGATCAAACACACACTGGGG
CT0067156      --> ........................................CACACTGGGG
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               351    -    401
RU05168        --> GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAAAACCCGAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTC......................
CT0062705      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCA.............
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- GAAAGCCTGTCCTGAAGTGGAA............................
CT0070297      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAGAACCCAAAA-
ET0020998      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAAAACCCGAAA-
ET0025256      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAAAACCCGAAA-
ET0034466      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAAAACCCGAAA-
ET0032660      <-- GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAGAACCCGAAA-
CT0068806      <-- ..................GGAAGCCCTCAACTGACCAGAAAACCCGAAAA
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> GAAAGCCTGTCCTGAAGTGGAAG...........................
ET0081621      --> GAAAGCCTGTCCTGAAGTGGAA............................
CT0053656      --> GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAAAACCCGAAA-
CT0028277      --> GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGAGAACCCAAAA-
CT0067156      --> GAAAGCCTGTCCTGAAGTGGAAGCCCTCAACTGACCAGATAACCCGAAA-
ET0065618      --> .................................ACCAGAGAACCCGAAA-
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               401    -    451
RU05168        --> GATTCAACAACAGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- GATTCAACAACAGGCAGGTATGCCc.........................
ET0020998      <-- GATTCAACAACGGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
ET0025256      <-- GATTCAACAACGGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
ET0034466      <-- GATTCAACAACGGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
ET0032660      <-- GATTCAACAACAGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
CT0068806      <-- GATTCAACAACGGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> GATTCAACAACGGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
CT0028277      --> GATTCAACAACAGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
CT0067156      --> GATTCAACAACAGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
ET0065618      --> GATTCAACAACAGGCAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGG
ET0128175      --> ...........................................TACCAGG
ET0130313      --> ...........................................TACCAGG
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               451    -    501
RU05168        --> CCTCTGAATTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- CCTCTG............................................
ET0025256      <-- CCTCTG............................................
ET0034466      <-- CCTCTG............................................
ET0032660      <-- CCTCTGAATTTCTT-CGAAAACGTGTCCACGCTTCTGATTGAGAACACTG
CT0068806      <-- CCTCTGAATTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
CT0045274      <-- ....................cgtaGTCCACGCTTCTGATTGAGAACACTG
CT0048235      <-- ....................cgtaGTCCACGCTTCTGATTGAGAACACTG
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> CCTCTGAATTTCTTACGAAAACATGTCCACGCTTCTGA............
CT0028277      --> CCTCTGAATTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
CT0067156      --> CCTCTGAATTTCTT-CGAAAACGTGTCCACGCTTCTGATTGAGAACACTG
ET0065618      --> CCTCTGAATTTCTT-CGAAAACGTGTCCACGCTTCTGATTGAGAACACTG
ET0128175      --> C-TCTGAATTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
ET0130313      --> CCTCTGAATTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
CT0037046      --> ...tttttTTTCTT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
RH10G94        --> ............TT-CGAAAACATGTCCACGCTTCTGATTGAGAACACTG
CT0074714      --> .........................cctACGCTTCTGATTGAGAACACTG
ET0085433      --> ..............................GCTTCTGATTGAGAACACTG
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               501    -    551
RU05168        --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- TAGATACCT.........................................
CT0068806      <-- TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
CT0045274      <-- TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATACAC
CT0048235      <-- TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATACAC
CT0120673      <-- ................CACCCTCAGGGGCTTGAATTTCAACAAGATATAC
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATA...
CT0067156      --> TAGATACCTCCAAGAGCACCCTCAGGG.......................
ET0065618      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACA........
ET0128175      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
ET0130313      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
CT0037046      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
RH10G94        --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
CT0074714      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
ET0085433      --> TAGATACCTCCAAGAGCACCCTCAGGGGCTTGAATTTCAACAAGATATAC
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               551    -    601
RU05168        --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0045274      <-- GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0048235      <-- GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0120673      <-- GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0017003      <-- .............CTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0025826      <-- ......................................CA-T-AGAT-AA
CT0039015      <-- ......................................CA-T-AGAT-AA
ET0002244      <-- ...........................................AGAT-AA
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
ET0130313      --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0037046      --> GGGTTCAAGAAGCCTTGGCTTGGCTGTCAGCTGAGAAGCA-T-AGAT-AA
RH10G94        --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0074714      --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCAATAAGATAAA
ET0085433      --> GGGTTCAAGGAGCCTTGGCTTGGCTGTAAGCTGAGAAGCA-T-AGAT-AA
CT0035658      --> .......................................A-T-AGAT-AA
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               601    -    651
RU05168        --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- CCCTCCTGGCA.......................................
CT0045274      <-- CCCTCCTGGCAGTTGGAATGACCTGACCACCACCTCTGTGAATAGCATCA
CT0048235      <-- CCCTCCTGGCAGTTGGAATGACCTGACCACCACCTCTGTGAATAGCATCA
CT0120673      <-- CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0017003      <-- CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0025826      <-- CCCTCCTGGCGGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0039015      <-- CCCTCCTGGCGGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
ET0002244      <-- CCCTCCTGGCGGTTGGAATGACCTGACCACCACCTCTGTGAATAGCATCA
ET0096549      <-- .....CTGGCGGTTGGAATGACCTGACCACCACCTCTGTGAATAGCATCA
ET0098072      <-- ...................................CTGTGAATAGCATCA
ET0099332      <-- ...................................CTGTGAATAGCATCA
ET0064460      <-- ......................................TGAATAGCATCA
ET0142152      <-- ......................................TGAATAGCATCA
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
ET0130313      --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0037046      --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAAT.......
RH10G94        --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0074714      --> CCCTCCTGGCGGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
ET0085433      --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0035658      --> CCCTCCTGGCAGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0020605      --> ........tctGTTGGAATGACCTGACCACCTCCTCTGTGAATAGCATCA
CT0099876      --> ....................ACCTGACCACCACCTCTGTGAATAGCATCA
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               651    -    701
RU05168        --> GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0048235      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0120673      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0017003      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0025826      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0039015      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0002244      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0096549      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0098072      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0099332      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0064460      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0142152      <-- GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> GCATGAAGAACAACATCACAGACTT.........................
ET0130313      --> GCATGAAGAACAACATCACAGACTT.........................
CT0037046      --> ..................................................
RH10G94        --> GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0074714      --> GCATGAAGAACAACATCACAGACTTCAAAGCAAAATACCCCctcattg..
ET0085433      --> GCATGAAG..........................................
CT0035658      --> GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0020605      --> GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0099876      --> GCATGAAGAACAACATCACAGACTTCAAAGCAAA-TACCCCTCATGTTTT
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               701    -    751
RU05168        --> CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- CTTCAG............................................
CT0048235      <-- CTTCAG............................................
CT0120673      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0017003      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0025826      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0039015      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0002244      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0096549      <-- CTTCAGCCAATGCACCTTCCTTTAAAGCCCACTGGAACCCAGCAACAACA
ET0098072      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0099332      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0064460      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0142152      <-- CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0010916      <-- ........................AAGCCCACTGGAACCCAGCAACAACA
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCTTTCAACAACA
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0020605      --> CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0099876      --> CTTCAGCCAATGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
CT0042102      --> ..........TGCACCTTCCTTTGAAGCCCACTGGAACCCAGCAACAACA
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               751    -    801
RU05168        --> GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- GAGTCCTTGATTTCATTAAGGTACTGAAactacccttaac..........
CT0025826      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTA..............
CT0039015      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTA..............
ET0002244      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0096549      <-- GAGTCCTTGATTTCATTAAGGTACT.........................
ET0098072      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0099332      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0064460      <-- GAGTCCTTGATTTCATTGAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0142152      <-- GAGTCCTTGATTTCATTGAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0010916      <-- GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0085382      <-- ........................................TGTCAACCAC
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> GAGTCCTTGATTTCATTAAGGT............................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCAA....
CT0020605      --> GAGTCCTTGATTTCATTAAGGTACTGAAC.....................
CT0099876      --> GAGTCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGTCA.....
CT0042102      --> GAGTCCTTGATTTCATTGAGGTACTGAACTCCCTTACACATGTCAACCAC
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               801    -    851
RU05168        --> CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- CATGTTAGGACCAGTGGTCTCACGGGCCAAAACACC..............
ET0096549      <-- ..................................................
ET0098072      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0099332      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0064460      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0142152      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0010916      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAACA
ET0085382      <-- CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> CATGTTAGGACCAGTGGTCTCA-GGGCCAAAACACCAGATTTTCTTAGCA
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               851    -    901
RU05168        --> AGATCCTTGTCCC-AACCAAATT-CCTCAGCCAAGATCTTGGAACGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- AGATCCTTGTCCC-AACCAAATT-CCTCGGCCAAG...............
ET0099332      <-- AGATCCTTGTCCC-AACCAAATT-CCTCGGCCAAG...............
ET0064460      <-- AGATCCTTGTCCC-AACCAAATT-CCTCAGC...................
ET0142152      <-- AGATCCTTGTCCCCAACCAAATT-CCTCAGC...................
ET0010916      <-- AGATCCTTGTCCC-AACCAAATT-CCTCAGCCAA................
ET0085382      <-- AGATCCTTGTCCC-AACCAAATT-CCTCAGCCAAGATCTTGGAACGAATT
ET0070287      <-- ..............................CCAAGATCTTGGAACGAATT
ET0017268      <-- ...............................CAAGATCTTGGAACGAATT
ET0009156      <-- ............................................CGAATT
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> AGATCCTTGTCCC-AACCAAATT-CCTCAGCCA.................
ET0129039      --> .................CAAATTTCCTCAGCCAAGATCTTGGAACGAATT
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               901    -    951
RU05168        --> TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................  Control
CT0133093      <-- ..................................................  Control
ET0034639      <-- ..................................................  Ethylene
CT0005933      <-- ..................................................  Control
ET0036517      <-- ..................................................  Ethylene
ET0041879      <-- ..................................................  Ethylene
CT0049360      <-- ..................................................  Control
CT0009780      <-- ..................................................  Control
CT0018776      <-- ..................................................  Control
CT0033607      <-- ..................................................  Control
CT0053808      <-- ..................................................  Control
CT0134173      <-- ..................................................  Control
CT0026429      <-- ..................................................  Control
CT0010220      <-- ..................................................  Control
CT0062705      <-- ..................................................  Control
CT0058337      <-- ..................................................  Control
CT0080051      <-- ..................................................  Control
CT0081552      <-- ..................................................  Control
CT0082494      <-- ..................................................  Control
CT0127947      <-- ..................................................  Control
ET0012735      <-- ..................................................  Ethylene
CT0070297      <-- ..................................................  Control
ET0020998      <-- ..................................................  Ethylene
ET0025256      <-- ..................................................  Ethylene
ET0034466      <-- ..................................................  Ethylene
ET0032660      <-- ..................................................  Ethylene
CT0068806      <-- ..................................................  Control
CT0045274      <-- ..................................................  Control
CT0048235      <-- ..................................................  Control
CT0120673      <-- ..................................................  Control
CT0017003      <-- ..................................................  Control
CT0025826      <-- ..................................................  Control
CT0039015      <-- ..................................................  Control
ET0002244      <-- ..................................................  Ethylene
ET0096549      <-- ..................................................  Ethylene
ET0098072      <-- ..................................................  Ethylene
ET0099332      <-- ..................................................  Ethylene
ET0064460      <-- ..................................................  Ethylene
ET0142152      <-- ..................................................  Ethylene
ET0010916      <-- ..................................................  Ethylene
ET0085382      <-- TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCTGCAAG  Ethylene
ET0070287      <-- TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCTGCAAG  Ethylene
ET0017268      <-- TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCTGCAAG  Ethylene
ET0009156      <-- TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCTGCAAG  Ethylene
CT0130903      <-- .....ATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCAGCAAG  Control
CT0079054      <-- ......TCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCAGCAAG  Control
RH22W74        <-- ..................................................  WaterDS
CT0014900      <-- ..................................................  Control
CT0066977      <-- ..................................................  Control
CT0057639      <-- ..................................................  Control
ET0005757      <-- ..................................................  Ethylene
ET0009462      <-- ..................................................  Ethylene
ET0055127      <-- ..................................................  Ethylene
CT0000965      <-- ..................................................  Control
ET0060146      <-- ..................................................  Ethylene
ET0048090      <-- ..................................................  Ethylene
ET0017026      <-- ..................................................  Ethylene
CT0135344      <-- ..................................................  Control
RH15L100       <-- ..................................................  WaterDS
CT0006246      --> ..................................................  Control
CT0028876      --> ..................................................  Control
CT0074601      --> ..................................................  Control
CT0005984      --> ..................................................  Control
CT0092933      --> ..................................................  Control
ET0004884      --> ..................................................  Ethylene
ET0057923      --> ..................................................  Ethylene
CT0016377      --> ..................................................  Control
CT0103495      --> ..................................................  Control
CT0012003      --> ..................................................  Control
ET0081621      --> ..................................................  Ethylene
CT0053656      --> ..................................................  Control
CT0028277      --> ..................................................  Control
CT0067156      --> ..................................................  Control
ET0065618      --> ..................................................  Ethylene
ET0128175      --> ..................................................  Ethylene
ET0130313      --> ..................................................  Ethylene
CT0037046      --> ..................................................  Control
RH10G94        --> ..................................................  WaterDS
CT0074714      --> ..................................................  Control
ET0085433      --> ..................................................  Ethylene
CT0035658      --> ..................................................  Control
CT0020605      --> ..................................................  Control
CT0099876      --> ..................................................  Control
CT0042102      --> ..................................................  Control
ET0129039      --> TTAGGATCATCCCTTGGACCAATACGGCCATCATCAATGGCCTCTGCAAG  Ethylene
CT0081607      --> ..................................................  Control
RH40BE35       --> ..................................................  WaterDS
CT0120458      --> ..................................................  Control
CT0089593      --> ..................................................  Control
ET0071131      --> ..................................................  Ethylene
ET0078450      --> ..................................................  Ethylene
ET0079208      --> ..................................................  Ethylene
ET0098416      --> ..................................................  Ethylene
ET0099364      --> ..................................................  Ethylene
ET0096965      --> ..................................................  Ethylene
ET0081361      --> ..................................................  Ethylene
ET0118296      --> ..................................................  Ethylene
CT0087050      --> ..................................................  Control
CT0009326      --> ..................................................  Control
ET0004992      --> ..................................................  Ethylene
RH36AL14       --> ..................................................  WaterDS
CT0034761      --> ..................................................  Control

               951    -   1001
RU05168        --> ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
ET0070287      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
ET0017268      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
ET0009156      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTGGTTG
CT0130903      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
CT0079054      <-- ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ACCTTCTTCCAATGGGCGTGCTTCCATGTACAAACGGTTATGCTTG-TTG
CT0081607      --> ...........................taacggtttattgtctTTG-TTG
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1001   -   1051
RU05168        --> GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGG..........
ET0070287      <-- GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCGC
ET0017268      <-- GGGGACGTTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCAC
ET0009156      <-- GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCAC
CT0130903      <-- GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCAC
CT0079054      <-- GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCAC
RH22W74        <-- .....................ACGGACAGACTTCTCAAGGACAGTCTCAC
CT0014900      <-- .................................................C
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCGC
CT0081607      --> GGGGAC-TTGCTCATCACTGTACGGACAGACTTCTCAAGGACAGTCTCGC
RH40BE35       --> .....................ACGGACAGACTTCTCAAGGACAGTCTCAC
CT0120458      --> .............................................CTCGC
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1051   -   1101
RU05168        --> GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
ET0017268      <-- GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
ET0009156      <-- GGAAGGACACAACAGGGTCAGATTTTACAATTTCA...............
CT0130903      <-- GGAAGGACACAACAGGGTCAGATTT.........................
CT0079054      <-- GGAAGGACACAACAGGGTCAGATTTTACAATTT.................
RH22W74        <-- GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
CT0014900      <-- GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
CT0066977      <-- ..............................................AAAA
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
CT0081607      --> GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
RH40BE35       --> GGGAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
CT0120458      --> GGAAGGACACAACAGGGTCAGATTTTACAATTTCAGCTCCACCCATAAAA
CT0089593      --> ............................agacgcactcCCACCCATAAAA
ET0071131      --> .......................................CACCCATAAAA
ET0078450      --> .......................................CACCCATAAAA
ET0079208      --> .......................................CACCCATAAAA
ET0098416      --> .......................................CACCCATAAAA
ET0099364      --> .......................................CACCCATAAAA
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1101   -   1151
RU05168        --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- TCATCCTGAAGATACCTTCc..............................
ET0017268      <-- TCATCCTGAAGAT-CCTTCAAACAG.........................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
CT0014900      <-- TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
CT0066977      <-- TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
CT0057639      <-- ..............CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> TCAT..............................................
CT0081607      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCA...................
RH40BE35       --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
CT0120458      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
CT0089593      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0071131      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0078450      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0079208      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0098416      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0099364      --> TCATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0096965      --> ..ATCCTGAAGAT-CCTTCAAACAGATCTCAAGGTGGAGTTCACCAGCAC
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1151   -   1201
RU05168        --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................  Control
CT0133093      <-- ..................................................  Control
ET0034639      <-- ..................................................  Ethylene
CT0005933      <-- ..................................................  Control
ET0036517      <-- ..................................................  Ethylene
ET0041879      <-- ..................................................  Ethylene
CT0049360      <-- ..................................................  Control
CT0009780      <-- ..................................................  Control
CT0018776      <-- ..................................................  Control
CT0033607      <-- ..................................................  Control
CT0053808      <-- ..................................................  Control
CT0134173      <-- ..................................................  Control
CT0026429      <-- ..................................................  Control
CT0010220      <-- ..................................................  Control
CT0062705      <-- ..................................................  Control
CT0058337      <-- ..................................................  Control
CT0080051      <-- ..................................................  Control
CT0081552      <-- ..................................................  Control
CT0082494      <-- ..................................................  Control
CT0127947      <-- ..................................................  Control
ET0012735      <-- ..................................................  Ethylene
CT0070297      <-- ..................................................  Control
ET0020998      <-- ..................................................  Ethylene
ET0025256      <-- ..................................................  Ethylene
ET0034466      <-- ..................................................  Ethylene
ET0032660      <-- ..................................................  Ethylene
CT0068806      <-- ..................................................  Control
CT0045274      <-- ..................................................  Control
CT0048235      <-- ..................................................  Control
CT0120673      <-- ..................................................  Control
CT0017003      <-- ..................................................  Control
CT0025826      <-- ..................................................  Control
CT0039015      <-- ..................................................  Control
ET0002244      <-- ..................................................  Ethylene
ET0096549      <-- ..................................................  Ethylene
ET0098072      <-- ..................................................  Ethylene
ET0099332      <-- ..................................................  Ethylene
ET0064460      <-- ..................................................  Ethylene
ET0142152      <-- ..................................................  Ethylene
ET0010916      <-- ..................................................  Ethylene
ET0085382      <-- ..................................................  Ethylene
ET0070287      <-- ..................................................  Ethylene
ET0017268      <-- ..................................................  Ethylene
ET0009156      <-- ..................................................  Ethylene
CT0130903      <-- ..................................................  Control
CT0079054      <-- ..................................................  Control
RH22W74        <-- CGGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  WaterDS
CT0014900      <-- CGGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Control
CT0066977      <-- CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Control
CT0057639      <-- CGGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Control
ET0005757      <-- ......................CTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0009462      <-- ......................CTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0055127      <-- ..................................................  Ethylene
CT0000965      <-- ..................................................  Control
ET0060146      <-- ..................................................  Ethylene
ET0048090      <-- ..................................................  Ethylene
ET0017026      <-- ..................................................  Ethylene
CT0135344      <-- ..................................................  Control
RH15L100       <-- ..................................................  WaterDS
CT0006246      --> ..................................................  Control
CT0028876      --> ..................................................  Control
CT0074601      --> ..................................................  Control
CT0005984      --> ..................................................  Control
CT0092933      --> ..................................................  Control
ET0004884      --> ..................................................  Ethylene
ET0057923      --> ..................................................  Ethylene
CT0016377      --> ..................................................  Control
CT0103495      --> ..................................................  Control
CT0012003      --> ..................................................  Control
ET0081621      --> ..................................................  Ethylene
CT0053656      --> ..................................................  Control
CT0028277      --> ..................................................  Control
CT0067156      --> ..................................................  Control
ET0065618      --> ..................................................  Ethylene
ET0128175      --> ..................................................  Ethylene
ET0130313      --> ..................................................  Ethylene
CT0037046      --> ..................................................  Control
RH10G94        --> ..................................................  WaterDS
CT0074714      --> ..................................................  Control
ET0085433      --> ..................................................  Ethylene
CT0035658      --> ..................................................  Control
CT0020605      --> ..................................................  Control
CT0099876      --> ..................................................  Control
CT0042102      --> ..................................................  Control
ET0129039      --> ..................................................  Ethylene
CT0081607      --> ..................................................  Control
RH40BE35       --> CGGCAATAATGTGCTCTCCGGACTCCTCAATAGAACAGACAACCATAGGA  WaterDS
CT0120458      --> CGGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Control
CT0089593      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Control
ET0071131      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0078450      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0079208      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0098416      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0099364      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0096965      --> CAGCAATAATGTGCTCTCCAGACTCCTCAATAGAACAGACAACCATAGGA  Ethylene
ET0081361      --> ..................................................  Ethylene
ET0118296      --> ..................................................  Ethylene
CT0087050      --> ..................................................  Control
CT0009326      --> ..................................................  Control
ET0004992      --> ..................................................  Ethylene
RH36AL14       --> ..................................................  WaterDS
CT0034761      --> ..................................................  Control

               1201   -   1251
RU05168        --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
CT0014900      <-- TCAGAC............................................
CT0066977      <-- TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
CT0057639      <-- TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0005757      <-- TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0009462      <-- TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0055127      <-- ...........................cttcacAGCTTGG--AAGATCTG
CT0000965      <-- ..........................................AAGATCTG
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
CT0120458      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
CT0089593      --> TCAGACTTTGCCAGACGCTTGA--CCTTCAACAAGCTTGGG-AAGAT...
ET0071131      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGGGAAGATCTG
ET0078450      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0079208      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGGGAAGATCTG
ET0098416      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0099364      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0096965      --> TCAGACTTTGCCAGACGCTTGAGACCTTCAACAAGCTTGGG-AAGATCTG
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1251   -   1301
RU05168        --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
CT0014900      <-- ..................................................
CT0066977      <-- AAGCTAACCTTtgtctac................................
CT0057639      <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0005757      <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0009462      <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0055127      <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
CT0000965      <-- AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0060146      <-- ......................CAACACGCA-CAACAGGAGAGACAGAGA
ET0048090      <-- .......................................AGAGACAGAGA
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
CT0120458      --> AAGC-AACCTTGCACTGAA...............................
CT0089593      --> ..................................................
ET0071131      --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0078450      --> AAGC-AACCTTGCACTGAACAGCAACACGCAACAACAGGAGAGACAGAGA
ET0079208      --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0098416      --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0099364      --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0096965      --> AAGC-AACCTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0081361      --> ........CTTGCACTGAACAGCAACACGCA-CAACAGGAGAGACAGAGA
ET0118296      --> .....................GCAACACGCA-CAACAGGTGAGACAGAGA
CT0087050      --> ....................................AGGTGAGACAGAGA
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1301   -   1351
RU05168        --> ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCT..............
ET0005757      <-- ACTTCATAGCACGAATGGGGTGAGCATCAG....................
ET0009462      <-- ACTTCATAGCACGAATGGGGTGAGCATCAG....................
ET0055127      <-- ACTTCATAGCACGAATGGGGTGAGCATCAG....................
CT0000965      <-- ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
ET0060146      <-- ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
ET0048090      <-- ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTG.....
ET0017026      <-- ....................ctgcgtaccaATTCCTTCTCATTTGTCAAG
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ACTTCATAGCAac.....................................
ET0078450      --> ACTTCATAGCAacg....................................
ET0079208      --> ACTTCATAGCAac.....................................
ET0098416      --> ACTTCATAGCAacg....................................
ET0099364      --> ACTTCATAGCAacg....................................
ET0096965      --> ACTTCATAGCAacg....................................
ET0081361      --> ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
ET0118296      --> ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
CT0087050      --> ACTTCATAGCACGAATGGGGTGAGCATCAGATTCCTTCTCATTTGTCAAG
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1351   -   1401
RU05168        --> GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
ET0060146      <-- GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
ET0048090      <-- ..................................................
ET0017026      <-- GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
CT0135344      <-- ..................................................
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
ET0118296      --> GTAGCATTCTTGGTGATGAACTGATCCAGACCAACCAAGGCAACAGTGTT
CT0087050      --> GTAGCATTCTTGGTGATGAACTGATCCAGACCAACTAAGGCAACAGTGTT
CT0009326      --> ..................................................
ET0004992      --> ..................................................
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1401   -   1451
RU05168        --> ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
ET0060146      <-- ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
ET0048090      <-- ..................................................
ET0017026      <-- ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
CT0135344      <-- ............ATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
RH15L100       <-- ..................................................
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ACCACAGGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ACCACAGGGAACATCCTCAACAGTTTTCTTGTTTCTTTCCCATCCAGATA
ET0118296      --> ACCACAAGGAACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
CT0087050      --> ACCACAGGGA........................................
CT0009326      --> ..........ACATCCTCAACAGTTT-CTTGTTTCTTTCCCATCCAGATA
ET0004992      --> ...............................TTTCTTTCCCATCCAGATA
RH36AL14       --> ..................................................
CT0034761      --> ..................................................

               1451   -   1501
RU05168        --> ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ACAGTCCTCTGT......................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ACAGTCCTCTGTACATTCTTC.............................
ET0060146      <-- ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
ET0048090      <-- ..................................................
ET0017026      <-- ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
CT0135344      <-- ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
RH15L100       <-- ............ACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ACAGTCCTCTGT......................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ACAGTCCTCTGTACATTCTTC.............................
ET0118296      --> ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
CT0087050      --> ..................................................
CT0009326      --> ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
ET0004992      --> ACAGTCCTCTGTACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
RH36AL14       --> ............ACATTCTTCACATACAGATCCTTCTTTTCCCCGGGAAC
CT0034761      --> ...................................CTTTTCCCCAGGAAC

               1501   -   1551
RU05168        --> ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ATAGTTTGG.........................................
ET0048090      <-- ..................................................
ET0017026      <-- ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCC...
CT0135344      <-- ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
RH15L100       <-- ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ATAGTTTGGT........................................
CT0087050      --> ..................................................
CT0009326      --> ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
ET0004992      --> ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
RH36AL14       --> ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG
CT0034761      --> ATAGTTTGGTCCCATGATTCTAACCTTCAAACCTGTTTGGACCCTCCCAG

               1551   -   1601
RU05168        --> CAAACACACGGCCAAAGGCAAAGAACCTACCCTTGTCAGATGCAGGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- CAAACACACGGCCAAAGGCAAAGAACCTAC....................
RH15L100       <-- CAAACACACGGCCAAAGGCAAAGAACCTACCCTTGTCAGATGCAGGAATC
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> CAAACACACGGCCAAAGGCAAAGA..........................
ET0004992      --> CAAACACACGGCCAAAGGCAAAGAACCTACCCTTGTCAGATGCAGGAATC
RH36AL14       --> CAAACACACGGCCAAAGGCAAAGAACCTACCCTTGTCAGATGCAGGAATC
CT0034761      --> CAAACACACGGCCAAAGGCAAAGAACCTACCCTTGTCAGATGCAGGAATC

               1601   -   1651
RU05168        --> ATCTTAGATACATAGAGCATAAGAGGACCATCCGGATCACAGTTTCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- ..................................................
CT0133093      <-- ..................................................
ET0034639      <-- ..................................................
CT0005933      <-- ..................................................
ET0036517      <-- ..................................................
ET0041879      <-- ..................................................
CT0049360      <-- ..................................................
CT0009780      <-- ..................................................
CT0018776      <-- ..................................................
CT0033607      <-- ..................................................
CT0053808      <-- ..................................................
CT0134173      <-- ..................................................
CT0026429      <-- ..................................................
CT0010220      <-- ..................................................
CT0062705      <-- ..................................................
CT0058337      <-- ..................................................
CT0080051      <-- ..................................................
CT0081552      <-- ..................................................
CT0082494      <-- ..................................................
CT0127947      <-- ..................................................
ET0012735      <-- ..................................................
CT0070297      <-- ..................................................
ET0020998      <-- ..................................................
ET0025256      <-- ..................................................
ET0034466      <-- ..................................................
ET0032660      <-- ..................................................
CT0068806      <-- ..................................................
CT0045274      <-- ..................................................
CT0048235      <-- ..................................................
CT0120673      <-- ..................................................
CT0017003      <-- ..................................................
CT0025826      <-- ..................................................
CT0039015      <-- ..................................................
ET0002244      <-- ..................................................
ET0096549      <-- ..................................................
ET0098072      <-- ..................................................
ET0099332      <-- ..................................................
ET0064460      <-- ..................................................
ET0142152      <-- ..................................................
ET0010916      <-- ..................................................
ET0085382      <-- ..................................................
ET0070287      <-- ..................................................
ET0017268      <-- ..................................................
ET0009156      <-- ..................................................
CT0130903      <-- ..................................................
CT0079054      <-- ..................................................
RH22W74        <-- ..................................................
CT0014900      <-- ..................................................
CT0066977      <-- ..................................................
CT0057639      <-- ..................................................
ET0005757      <-- ..................................................
ET0009462      <-- ..................................................
ET0055127      <-- ..................................................
CT0000965      <-- ..................................................
ET0060146      <-- ..................................................
ET0048090      <-- ..................................................
ET0017026      <-- ..................................................
CT0135344      <-- ..................................................
RH15L100       <-- ATCTTAGATACATAGAGCATAAGAGGACCATCCGGATCACAGTTTCTGAT
CT0006246      --> ..................................................
CT0028876      --> ..................................................
CT0074601      --> ..................................................
CT0005984      --> ..................................................
CT0092933      --> ..................................................
ET0004884      --> ..................................................
ET0057923      --> ..................................................
CT0016377      --> ..................................................
CT0103495      --> ..................................................
CT0012003      --> ..................................................
ET0081621      --> ..................................................
CT0053656      --> ..................................................
CT0028277      --> ..................................................
CT0067156      --> ..................................................
ET0065618      --> ..................................................
ET0128175      --> ..................................................
ET0130313      --> ..................................................
CT0037046      --> ..................................................
RH10G94        --> ..................................................
CT0074714      --> ..................................................
ET0085433      --> ..................................................
CT0035658      --> ..................................................
CT0020605      --> ..................................................
CT0099876      --> ..................................................
CT0042102      --> ..................................................
ET0129039      --> ..................................................
CT0081607      --> ..................................................
RH40BE35       --> ..................................................
CT0120458      --> ..................................................
CT0089593      --> ..................................................
ET0071131      --> ..................................................
ET0078450      --> ..................................................
ET0079208      --> ..................................................
ET0098416      --> ..................................................
ET0099364      --> ..................................................
ET0096965      --> ..................................................
ET0081361      --> ..................................................
ET0118296      --> ..................................................
CT0087050      --> ..................................................
CT0009326      --> ..................................................
ET0004992      --> ATCTTAGATACATAGAGCATAAGAGGA.......................
RH36AL14       --> ATCTTAGATACATAGAGCATAAGAGGACCATCAGGATCGCAGTTTCTGAT
CT0034761      --> ATCTTAGATACATAGAGCATAAGAGGACCATCCGGATCACAGTTTCTGAT

               1651   -   1701
RU05168        --> AGCAGTAGCATATCGGTCATCCAGGGGACCCTCGTACaaattctc
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0051708      <-- .............................................
CT0133093      <-- .............................................
ET0034639      <-- .............................................
CT0005933      <-- .............................................
ET0036517      <-- .............................................
ET0041879      <-- .............................................
CT0049360      <-- .............................................
CT0009780      <-- .............................................
CT0018776      <-- .............................................
CT0033607      <-- .............................................
CT0053808      <-- .............................................
CT0134173      <-- .............................................
CT0026429      <-- .............................................
CT0010220      <-- .............................................
CT0062705      <-- .............................................
CT0058337      <-- .............................................
CT0080051      <-- .............................................
CT0081552      <-- .............................................
CT0082494      <-- .............................................
CT0127947      <-- .............................................
ET0012735      <-- .............................................
CT0070297      <-- .............................................
ET0020998      <-- .............................................
ET0025256      <-- .............................................
ET0034466      <-- .............................................
ET0032660      <-- .............................................
CT0068806      <-- .............................................
CT0045274      <-- .............................................
CT0048235      <-- .............................................
CT0120673      <-- .............................................
CT0017003      <-- .............................................
CT0025826      <-- .............................................
CT0039015      <-- .............................................
ET0002244      <-- .............................................
ET0096549      <-- .............................................
ET0098072      <-- .............................................
ET0099332      <-- .............................................
ET0064460      <-- .............................................
ET0142152      <-- .............................................
ET0010916      <-- .............................................
ET0085382      <-- .............................................
ET0070287      <-- .............................................
ET0017268      <-- .............................................
ET0009156      <-- .............................................
CT0130903      <-- .............................................
CT0079054      <-- .............................................
RH22W74        <-- .............................................
CT0014900      <-- .............................................
CT0066977      <-- .............................................
CT0057639      <-- .............................................
ET0005757      <-- .............................................
ET0009462      <-- .............................................
ET0055127      <-- .............................................
CT0000965      <-- .............................................
ET0060146      <-- .............................................
ET0048090      <-- .............................................
ET0017026      <-- .............................................
CT0135344      <-- .............................................
RH15L100       <-- AGCAGTTGCATATCGGTCATCCAGGGGACCCTCGTACctcggccg
CT0006246      --> .............................................
CT0028876      --> .............................................
CT0074601      --> .............................................
CT0005984      --> .............................................
CT0092933      --> .............................................
ET0004884      --> .............................................
ET0057923      --> .............................................
CT0016377      --> .............................................
CT0103495      --> .............................................
CT0012003      --> .............................................
ET0081621      --> .............................................
CT0053656      --> .............................................
CT0028277      --> .............................................
CT0067156      --> .............................................
ET0065618      --> .............................................
ET0128175      --> .............................................
ET0130313      --> .............................................
CT0037046      --> .............................................
RH10G94        --> .............................................
CT0074714      --> .............................................
ET0085433      --> .............................................
CT0035658      --> .............................................
CT0020605      --> .............................................
CT0099876      --> .............................................
CT0042102      --> .............................................
ET0129039      --> .............................................
CT0081607      --> .............................................
RH40BE35       --> .............................................
CT0120458      --> .............................................
CT0089593      --> .............................................
ET0071131      --> .............................................
ET0078450      --> .............................................
ET0079208      --> .............................................
ET0098416      --> .............................................
ET0099364      --> .............................................
ET0096965      --> .............................................
ET0081361      --> .............................................
ET0118296      --> .............................................
CT0087050      --> .............................................
CT0009326      --> .............................................
ET0004992      --> .............................................
RH36AL14       --> AGCATTAGCATACTGATCATCCAGGGGACCCTCGT..........
CT0034761      --> AGCAGTGGCATATCGGTCA..........................