Rose Transcriptome Database

               10     -     60
RU05170        --> AAGAAAGCATAGAAGTAAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- AAGAAAGCATAGAAGTAAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
CT0098888      <-- .......CATAGAAGTGAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
CT0100537      <-- ........ATAGAAGTGAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> AAGAAAGCATAGAAGTGAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
ET0107322      --> .......CATAGAAGTAAAGAAGAGGGAGTTTGAAAAGATGGAAGTTAAG
ET0034251      --> ........ATAGAAGTGAAGAAGAGGGAGTTTGAAA-GATGGAAGTTAAG
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               60     -    110
RU05170        --> AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
CT0098888      <-- AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
CT0100537      <-- AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
CT0099340      <-- .AAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
ET0107322      --> AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
ET0034251      --> AAAATGCTAGGGCTCCTCTTAGGGATCTTCTTCCTCGATGGGCTGTTCCT
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               110    -    160
RU05170        --> CCTCTCCGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- CCTTTCCGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
CT0098888      <-- CCTCTCTGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
CT0100537      <-- CCTCTCTGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
CT0099340      <-- CCTCTCTGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
ET0089937      <-- .................................................A
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> CCTCTCTGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
ET0107322      --> CCTTTCCGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
ET0034251      --> CCTCTCTGCGGCTTCTAACGTCCACCACTACAGCTTTATACTGAAGGAGA
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               160    -    210
RU05170        --> CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
CT0098888      <-- CGAACTTT-ACAAGACTATGTTTCGAAAAGCC..................
CT0100537      <-- CGAACTTTTACAAGACTATGTTTCGAAAAGCC..................
CT0099340      <-- CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
ET0089937      <-- CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
ET0107322      --> CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
ET0034251      --> CGAACTTT-ACAAGACTATGTTTCGAAAAGCCGATGCTCACTGTAAATGA
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               210    -    260
RU05170        --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- GCAGTTCCCAGGACCAACTATTCATGTTCG....................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- GCAGTTCCCAagttccaacaga............................
ET0089937      <-- GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
ET0107322      --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
ET0034251      --> GCAGTTCCCAGGACCAACTATTCATGTTCGACAAAGGAGATACTGTCTTT
CT0086189      --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
CT0093348      --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
CT0094699      --> GCAGTTCCCAGGACCAACTATTCATGTTCG-CAAAGGAGATACTG-CTTT
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               260    -    310
RU05170        --> TGTT-AATGTTCACAATGATGGCAAATATGGTATCACCATTCACTGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- TGTT-AATGTTCACAATGATGGCAAATATGGTATCACCATTCACTGGCAT
ET0027289      <-- ......................CAAATATGGTATCACCATTCACTGGCAT
ET0050924      <-- ......................CAAATATGGTATCACCATTCACTGGCAT
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> TGT...............................................
ET0107322      --> TGTT-AATGTTCACA...................................
ET0034251      --> TGT--AATGTTCA.....................................
CT0086189      --> TGTTTAATGTTCACAATGATGGCAAATATGGTATCACCATTCACTGGCAT
CT0093348      --> TGTTTAATGTTCACAATGATGGCAAATATGGTATCACCATTCACTGGCAT
CT0094699      --> TGTTTAATGTTCACAATGATGGCAAATATGGTATCACCATTCACTGGCAT
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               310    -    360
RU05170        --> GGAGTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- GGAGTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
ET0027289      <-- GGAGTGAAGCAACCAAATAATCCTTGGTCAGATGGTCCAGAAAACATCAC
ET0050924      <-- GGAGTGAAGCAACCAAATAATCCTTGGTCAGATGGTCCAGAAAACATCAC
CT0003001      <-- ...GTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
CT0088229      <-- .................aAATCCATGGTCAGATGGTCCAGAAAACATCAC
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> GGAGTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
CT0093348      --> GGAGTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
CT0094699      --> GGAGTGAAGCAACCAAATAATCCATGGTCAGATGGTCCAGAAAACATCAC
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               360    -    410
RU05170        --> TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCAT--TTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTAat............
ET0027289      <-- TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCAT--TTT
ET0050924      <-- TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCAT--TTT
CT0003001      <-- TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCATATTTT
CT0088229      <-- TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCATATTTT
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCATATTTT
CT0093348      --> TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCATATTTT
CT0094699      --> TCAGTGCCCGATTCAGCCTGGAAAAAACTTCACTTATGAGGTCATATTTT
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               410    -    460
RU05170        --> -C-AGATGAAGAAGGCACCCTATGGTGGCATGCGCATAGTGACTGGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- -C-AGATGAAGAAGGCACCCTATGGTGGCATGCGCATAGTGACTGGTCAC
ET0050924      <-- TCTAGATGAAGAAGGCACCCTATGGTGGCATGCGCATAGTGACTGGTCAC
CT0003001      <-- -C-AGATGAAGAAGGCACCCTATGGTGGCATGCGCATAGTGACTGGTCAC
CT0088229      <-- -C-AGATGAAGAAGGCACCCTATGGTGGCATGCGCATAGTGACTGGTCAC
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> -C-AGATGAAGAAGGCACCCTATGGTGGC.....................
CT0093348      --> -C-AGATGAAGAAGGCACCCTATGGTGGC.....................
CT0094699      --> -C-AGATGAAGAAGGCACCCTATGGTGGC.....................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               460    -    510
RU05170        --> GTGCTACAGTCCATGGTCACATCGTTATCTTACCTGAGATAGGAAAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................  Ethylene
CT0098888      <-- ..................................................  Control
CT0100537      <-- ..................................................  Control
CT0099340      <-- ..................................................  Control
ET0089937      <-- ..................................................  Ethylene
ET0027289      <-- GTGCTACAGTCCATGGTCACATCGTTATCTTACCCGAGATAGGAAAGACT  Ethylene
ET0050924      <-- GTGCTACAGTCCATGGTCACATCGTTATCTTACCCGAGATAGGAAAGACT  Ethylene
CT0003001      <-- GTGCTACAGTCCATGGTCACATCGTTATCTTACCTGAGATAGGAAAGACT  Control
CT0088229      <-- GTGCTACAGTCCATGGTCACATCGTTATCTTACCTGAGATAGGAAAGACT  Control
CT0139090      <-- ..................................................  Control
CT0098314      <-- ..................................................  Control
CT0047066      <-- ..................................................  Control
ET0017630      <-- ..................................................  Ethylene
ET0137151      <-- ..................................................  Ethylene
ET0041303      <-- ..................................................  Ethylene
ET0105583      <-- ..................................................  Ethylene
CT0026177      <-- ..................................................  Control
CT0020726      <-- ..................................................  Control
CT0053402      <-- ..................................................  Control
ET0078852      <-- ..................................................  Ethylene
CT0036208      <-- ..................................................  Control
ET0050015      <-- ..................................................  Ethylene
ET0004151      <-- ..................................................  Ethylene
CT0008365      <-- ..................................................  Control
CT0061842      <-- ..................................................  Control
RH40BF13       <-- ..................................................  WaterDS
RH41BF76       <-- ..................................................  WaterDS
ET0120529      <-- ..................................................  Ethylene
CT0034707      <-- ..................................................  Control
CT0112396      <-- ..................................................  Control
CT0104414      <-- ..................................................  Control
CT0105838      <-- ..................................................  Control
CT0107202      <-- ..................................................  Control
ET0120669      <-- ..................................................  Ethylene
CT0104648      <-- ..................................................  Control
ET0128037      <-- ..................................................  Ethylene
ET0132419      <-- ..................................................  Ethylene
CT0012863      <-- ..................................................  Control
ET0102833      --> ..................................................  Ethylene
ET0107322      --> ..................................................  Ethylene
ET0034251      --> ..................................................  Ethylene
CT0086189      --> ..................................................  Control
CT0093348      --> ..................................................  Control
CT0094699      --> ..................................................  Control
ET0050728      --> .....................................GATAGGAAAGACT  Ethylene
ET0137380      --> ..................................................  Ethylene
ET0137964      --> ..................................................  Ethylene
ET0139294      --> ..................................................  Ethylene
RH55CA104      --> ..................................................  WaterDS
ET0014979      --> ..................................................  Ethylene
CT0093640      --> ..................................................  Control
ET0070493      --> ..................................................  Ethylene
CT0039489      --> ..................................................  Control
CT0038973      --> ..................................................  Control
ET0009295      --> ..................................................  Ethylene
ET0117726      --> ..................................................  Ethylene
ET0056142      --> ..................................................  Ethylene
CT0133460      --> ..................................................  Control
CT0134758      --> ..................................................  Control
ET0148011      --> ..................................................  Ethylene
CT0133149      --> ..................................................  Control
ET0044570      --> ..................................................  Ethylene
ET0051893      --> ..................................................  Ethylene
ET0057508      --> ..................................................  Ethylene
CT0027233      --> ..................................................  Control
CT0099826      --> ..................................................  Control
CT0101513      --> ..................................................  Control
CT0102022      --> ..................................................  Control
CT0102191      --> ..................................................  Control
CT0099598      --> ..................................................  Control
ET0012744      --> ..................................................  Ethylene
CT0107493      --> ..................................................  Control
CT0107844      --> ..................................................  Control
CT0079281      --> ..................................................  Control
CT0065071      --> ..................................................  Control
ET0035410      --> ..................................................  Ethylene
ET0084214      --> ..................................................  Ethylene
CT0061727      --> ..................................................  Control
CT0063637      --> ..................................................  Control
CT0048465      --> ..................................................  Control
CT0045745      --> ..................................................  Control
ET0003811      --> ..................................................  Ethylene

               510    -    560
RU05170        --> TACCCATTTCCCGAACCTTACGCTGAGCAAACAATTTTTCTTGCATCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................  Ethylene
CT0098888      <-- ..................................................  Control
CT0100537      <-- ..................................................  Control
CT0099340      <-- ..................................................  Control
ET0089937      <-- ..................................................  Ethylene
ET0027289      <-- TACC..............................................  Ethylene
ET0050924      <-- TACC..............................................  Ethylene
CT0003001      <-- TATCCATTTCCCGAACCTTACGCTGAGCAAACc.................  Control
CT0088229      <-- TATCCATTTCCCGAACCTTACGCTGAGCAAACcacaatcacag.......  Control
CT0139090      <-- ..................................................  Control
CT0098314      <-- ..................................................  Control
CT0047066      <-- ..................................................  Control
ET0017630      <-- ..................................................  Ethylene
ET0137151      <-- ..................................................  Ethylene
ET0041303      <-- ..................................................  Ethylene
ET0105583      <-- ..................................................  Ethylene
CT0026177      <-- ..................................................  Control
CT0020726      <-- ..................................................  Control
CT0053402      <-- ..................................................  Control
ET0078852      <-- ..................................................  Ethylene
CT0036208      <-- ..................................................  Control
ET0050015      <-- ..................................................  Ethylene
ET0004151      <-- ..................................................  Ethylene
CT0008365      <-- ..................................................  Control
CT0061842      <-- ..................................................  Control
RH40BF13       <-- ..................................................  WaterDS
RH41BF76       <-- ..................................................  WaterDS
ET0120529      <-- ..................................................  Ethylene
CT0034707      <-- ..................................................  Control
CT0112396      <-- ..................................................  Control
CT0104414      <-- ..................................................  Control
CT0105838      <-- ..................................................  Control
CT0107202      <-- ..................................................  Control
ET0120669      <-- ..................................................  Ethylene
CT0104648      <-- ..................................................  Control
ET0128037      <-- ..................................................  Ethylene
ET0132419      <-- ..................................................  Ethylene
CT0012863      <-- ..................................................  Control
ET0102833      --> ..................................................  Ethylene
ET0107322      --> ..................................................  Ethylene
ET0034251      --> ..................................................  Ethylene
CT0086189      --> ..................................................  Control
CT0093348      --> ..................................................  Control
CT0094699      --> ..................................................  Control
ET0050728      --> TACCCATTTCCCGAACCTTACGCTGAGCAAACAATTTTTCTTGCATCGTG  Ethylene
ET0137380      --> .........................................TGCATCGTG  Ethylene
ET0137964      --> .........................................TGCATCGTG  Ethylene
ET0139294      --> .........................................TGCATCGTG  Ethylene
RH55CA104      --> ..................................................  WaterDS
ET0014979      --> ..................................................  Ethylene
CT0093640      --> ..................................................  Control
ET0070493      --> ..................................................  Ethylene
CT0039489      --> ..................................................  Control
CT0038973      --> ..................................................  Control
ET0009295      --> ..................................................  Ethylene
ET0117726      --> ..................................................  Ethylene
ET0056142      --> ..................................................  Ethylene
CT0133460      --> ..................................................  Control
CT0134758      --> ..................................................  Control
ET0148011      --> ..................................................  Ethylene
CT0133149      --> ..................................................  Control
ET0044570      --> ..................................................  Ethylene
ET0051893      --> ..................................................  Ethylene
ET0057508      --> ..................................................  Ethylene
CT0027233      --> ..................................................  Control
CT0099826      --> ..................................................  Control
CT0101513      --> ..................................................  Control
CT0102022      --> ..................................................  Control
CT0102191      --> ..................................................  Control
CT0099598      --> ..................................................  Control
ET0012744      --> ..................................................  Ethylene
CT0107493      --> ..................................................  Control
CT0107844      --> ..................................................  Control
CT0079281      --> ..................................................  Control
CT0065071      --> ..................................................  Control
ET0035410      --> ..................................................  Ethylene
ET0084214      --> ..................................................  Ethylene
CT0061727      --> ..................................................  Control
CT0063637      --> ..................................................  Control
CT0048465      --> ..................................................  Control
CT0045745      --> ..................................................  Control
ET0003811      --> ..................................................  Ethylene

               560    -    610
RU05170        --> GTTCAATACTGATGTGAAGGAACTAATTGATAACGCCACACTAATTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- .................................CGCCACACTAATTGGAG
CT0098314      <-- ...............................................tAG
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> GTTCAATACTGATGTGAAGGAACTAATTGATAACGCCACACTAATTGGAG
ET0137380      --> GTTCAATACTGATGTGAAGGAACTAATTGATAACGCCACACTAATTGGAG
ET0137964      --> GTTCAATACTGATGTGAAGGAACTAATTGATAACGCCACACTAATTGGAG
ET0139294      --> GTTCAATACTGATGTGAAGGAACTAATTGATAACGCCACACTAATTGGAG
RH55CA104      --> ..................................GCCACACTAATTGGAG
ET0014979      --> ...........................................ATTGGAG
CT0093640      --> .............................................TGGAG
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               610    -    660
RU05170        --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
CT0098314      <-- GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
ET0137380      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
ET0137964      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
ET0139294      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
RH55CA104      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
ET0014979      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
CT0093640      --> GTGACCCAGACCCATCGGATGGATTCACCATCAACGGCTGGCCAGGAGCT
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               660    -    710
RU05170        --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
CT0098314      <-- TTATTACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
CT0047066      <-- ...........................ATCCACTTTTGGAGTTGAATACG
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
ET0137380      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
ET0137964      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
ET0139294      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
RH55CA104      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
ET0014979      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
CT0093640      --> TTAT-ACAATTGCTCCAATGAAACCATATCCACTTTTGGAGTTGAATACG
ET0070493      --> ...................GAAACCATATCCACTTTTGGAGTTGAATACG
CT0039489      --> .........................aactttttaggaagttagaAATACG
CT0038973      --> .........................aacttttaggaagttagaaataACG
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               710    -    760
RU05170        --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
CT0098314      <-- GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
CT0047066      <-- GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAAacg.......
ET0137380      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0137964      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0139294      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
RH55CA104      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0014979      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
CT0093640      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0070493      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
CT0039489      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
CT0038973      --> GCAAGACCTATCTTTTTCGTCTAGTGAACGGTGTGATGAACGAAGAAATG
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               760    -    810
RU05170        --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
CT0098314      <-- TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
CT0047066      <-- TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> TTCTTTGGAATTGCCGGACACAACTTCA......................
ET0137964      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAG.............
ET0139294      --> TTCTTTGGAATTGCCGGACACAACTTCA......................
RH55CA104      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
ET0014979      --> TTCTTTGGAATTGCCGGACA..............................
CT0093640      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
ET0070493      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
CT0039489      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
CT0038973      --> TTCTTTGGAATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
ET0009295      --> ........AATTGCCGGACACAACTTCACCGTGGTAGCTCAAGACGCAGC
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               810    -    860
RU05170        --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
CT0098314      <-- ATACATCAAGCCCATAGTAACAAGCTACATAATGATT.............
CT0047066      <-- ATACATCAAGCCCATAGTAACAAGCTACAT....................
ET0017630      <-- ..................................ATTACTCCCGGCCAAA
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
ET0014979      --> ..................................................
CT0093640      --> ATACATCAAGCCCATAGTAACAAGCTACATAA..................
ET0070493      --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
CT0039489      --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
CT0038973      --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
ET0009295      --> ATACATCAAGCCCATAGTAACAAGCTACATAATGATTACTCCCGGCCAAA
ET0117726      --> ..................................ATTACTCCCGGCCAAA
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               860    -    910
RU05170        --> CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTA....
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
ET0137151      <-- ................................CCAAGTTCCTACTACATT
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> CCATAGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
CT0039489      --> CCATGGACATTCTACTAA................................
CT0038973      --> CCATGGACATTCTACTAA................................
ET0009295      --> CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
ET0117726      --> CCATGGACATTCTACTAACAGCAGACCAGTCTCCAAGTTCCTACTACATT
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               910    -    960
RU05170        --> GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
ET0137151      <-- GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> GCAGCCAcgcc.......................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
ET0117726      --> GCAGCCAACCCATTCTTTGACTCAAACGCTCCATTCGACAATACCACCAC
ET0056142      --> ..........................................ACCACCAC
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ................................................gt
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               960    -   1010
RU05170        --> CACAGCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- CACAGCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
ET0137151      <-- CACAGCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> CACAGCTATTCTCCAGT.................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> CACAGCTATT........................................
ET0117726      --> CACAGCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
ET0056142      --> CACAGCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
CT0133460      --> ....GCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
CT0134758      --> ....GCTATTCTCCAGTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
ET0148011      --> .....CTATTCTCCAGTACACAAACGCAACCGCCCCAATTGTCTATTCCT
CT0133149      --> cttatttcttcctagtTACACAAACGCAACCGCCCCA-TCGTCTATTCCT
ET0044570      --> .........................GCAACCGCCCCA-TCGTCTATTCCT
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1010   -   1060
RU05170        --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- TTTCCTTCACTTCCCTCGACGACCGACAAAGAA.................
ET0137151      <-- TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTtct
ET0041303      <-- ....CTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0105583      <-- ................................taCTGCAGATAACTTCAC
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0056142      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
CT0133460      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
CT0134758      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0148011      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
CT0133149      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0044570      --> TTTCCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0051893      --> ...CCTTCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
ET0057508      --> ......TCACTTCCCTCGACGACCGACAAAGAATCTGCAGATAACTTCAC
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1060   -   1110
RU05170        --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- actaagtctaat......................................
ET0041303      <-- AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
ET0105583      <-- AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
CT0026177      <-- ..aCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCG............
ET0056142      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
CT0133460      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
CT0134758      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
ET0148011      --> AAGCAAGATAAAGGCTTTTGGCAAGCGAGGAACATCCGA...........
CT0133149      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
ET0044570      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
ET0051893      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
ET0057508      --> AAGCAAGATAAAGGCTTT-GGCAAGCGAGGAACATCCGATTAGTGTGCCT
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1110   -   1160
RU05170        --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
ET0105583      <-- CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0026177      <-- CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0020726      <-- .....................TTCATCACAGTTTCCGTGAATCAGCTACC
CT0053402      <-- .......................CATCACAGTTTCCGTGAATCAGCTACC
ET0078852      <-- .............................................CTACC
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0133460      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0134758      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
ET0148011      --> ..................................................
CT0133149      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
ET0044570      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
ET0051893      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
ET0057508      --> CAAAATATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0027233      --> .....TATTACCAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0099826      --> ...........CAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0101513      --> ...........CAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0102022      --> ...........CAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0102191      --> ...........CAAAAGAATCTTCATCACAGTTTCCGTGAATCAGCTACC
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1160   -   1210
RU05170        --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- TTGTGATCTTGTTAA...................................
ET0105583      <-- TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0026177      <-- TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0020726      <-- TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0053402      <-- TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0078852      <-- TTGTGATCTTGTTAATGGCACTT-TGGGGGTCCGTAATGGTAATAGGCTG
CT0036208      <-- ................................................TG
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGG...
CT0133460      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0134758      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0148011      --> ..................................................
CT0133149      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0044570      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0051893      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0057508      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0027233      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0099826      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0101513      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0102022      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0102191      --> TTGTGATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
CT0099598      --> ....GATCTTGTTAATGGCACTTGTGGGGGTCC-TAATGGTAATAGGCTG
ET0012744      --> .................................................G
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1210   -   1260
RU05170        --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATTTA
CT0026177      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0020726      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0053402      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
ET0078852      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0036208      <-- GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
ET0050015      <-- ..........TGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TA.................
CT0134758      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TA.................
ET0148011      --> ..................................................
CT0133149      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TA.................
ET0044570      --> GCTGCTAGCTTGAACAATAT..............................
ET0051893      --> GCTGCTAGCTTGAACAATATCTAGTTTCTCCTACCCCCACTA........
ET0057508      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0027233      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0099826      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0101513      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0102022      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0102191      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0099598      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
ET0012744      --> GCTGCTAGCTTGAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0107493      --> ..........gaAACAATATC-AGTTTCTC-TACCCCCACTACTGATATA
CT0107844      --> ........................................TACTGATATA
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1260   -   1310
RU05170        --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- CTGCAACAATACTACAGCATG.............................
CT0026177      <-- CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTT...........
CT0020726      <-- CTGCAACAATACTACAGCATGTTGAATGATACTAGCTT............
CT0053402      <-- CTGCAACAATACTACAGCATGTTGAATGtattactttagttctttt....
ET0078852      <-- CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0036208      <-- CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
ET0050015      <-- CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
ET0004151      <-- ...CAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0099826      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0101513      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0102022      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0102191      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0099598      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
ET0012744      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0107493      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0107844      --> CTGCAACAATACTACAGCATGTTGAATGATACTAGCTTTGACACCGATTT
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1310   -   1360
RU05170        --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
CT0036208      <-- TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCA....
ET0050015      <-- TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
ET0004151      <-- TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
CT0008365      <-- ......................TTCAACTTCACAGGGGATGATGCAGACG
CT0061842      <-- ................................................CG
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGG............
CT0099826      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATG......
CT0101513      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATG......
CT0102022      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATG......
CT0102191      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATG......
CT0099598      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
ET0012744      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
CT0107493      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
CT0107844      --> TCCTAGTCAACCAGCTGTGTTATTCAACTTCACAGGGGATGATGCAGACG
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1360   -   1410
RU05170        --> ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ATTATATACTGCCAGAAGTAGGGACGAAGGCG..................
CT0036208      <-- ..................................................
ET0050015      <-- ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
ET0004151      <-- ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
CT0008365      <-- ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
CT0061842      <-- ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTG........
ET0012744      --> ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
CT0107493      --> ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
CT0107844      --> ATTATATACTGCCAGAAGTAGGGACGAAGGCGAAATTGGTTGAGTACGGG
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1410   -   1460
RU05170        --> GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAG...
ET0004151      <-- GC-ATCGGTTGAAATTGTGT..............................
CT0008365      <-- GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAG...
CT0061842      <-- GCGATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAGAAA
RH40BF13       <-- ....................ACCAAGGGACTAATATTGGGAATGCAGAAA
RH41BF76       <-- ....................ACCAAGGGACTAATATTGGGAATGCAGAAA
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAA........
CT0107493      --> GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAGAAA
CT0107844      --> GC-ATCGGTTGAAATTGTGTACCAAGGGACTAATATTGGGAATGCAGAAA
CT0079281      --> ..............................TAATATTGGGAATGCAGAAA
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1460   -   1510
RU05170        --> ACCA-TCCGATGCATTTGCATGGTTATAGCTTCTATGTCGTCGGCTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ACCAATCCGATGCATTTGCATGGTTATAGCTTCTATGTCGTCGGTTCAGC
RH40BF13       <-- ACCA-TCCGATGCATTTGCATGGTTATAGCTTCTATGTCGTCGGCTCAGC
RH41BF76       <-- ACCA-TCCGATGCATTTGCATGGTTATAGCTTCTATGTCGTCGGCTCAGC
ET0120529      <-- ...................................TGTCGTCGGCTCAGC
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ACCA-TCC..........................................
CT0107844      --> ACCA-TCCGAT.......................................
CT0079281      --> ACCA-TCCGATGCATTTGCATGGTTATAGCTTCTATGTCGTCGGCTCAGC
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1510   -   1560
RU05170        --> TTATGGCAATTGGAATGAGACCACTTCTCCAGACACTTACAACTTGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- TTATGGCAATTGGAATGAGACCACTTCTCCAGACACTTACAACTTGATAG
RH40BF13       <-- TTATGGCAATTGGAATGAGACCACTTCTCCAGACACTTACAACTTGATAG
RH41BF76       <-- TTATGGCAATTGGAATGAGACCACTTCTCCAGACACTTACAACTTGATAG
ET0120529      <-- TTATGGCAATTGGAATGAGACCACTTCTCCAGACACTTACAACTTGATAG
CT0034707      <-- ..................GACCACTTCTCCAGACACTTACAACTTGATAG
CT0112396      <-- .................................................G
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> TTATGGCAATTGGAATGAGACCACTTCTCCAGACACatggagagctga..
CT0065071      --> ................................................AG
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1560   -   1610
RU05170        --> ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAACGGATGGACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAACGGAT........
RH40BF13       <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAATGGATGGACTTCC
RH41BF76       <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAATGGATGGACTTCC
ET0120529      <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAATGGATGGACTTCC
CT0034707      <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAATGGATGGACTTCC
CT0112396      <-- ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAATGGATGGACTTCC
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ATCCACCGGAAGTCAACACCATCGGAGTTCCTAAGAACGGATGGACTTCC
ET0035410      --> ..............AACACCATCGGAGT-CCTAAGAATGGATGGACTTCC
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1610   -   1660
RU05170        --> ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
RH41BF76       <-- ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
ET0120529      <-- ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
CT0034707      <-- ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
CT0112396      <-- ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
CT0104414      <-- ................................T--GGTTTATGCATTGTC
CT0105838      <-- ................................T--GGTTTATGCATTGTC
CT0107202      <-- ...................................GGTTTATGCATTGTC
ET0120669      <-- ................................gtgGGTTTATGCATTGTC
CT0104648      <-- ....................................GTTTATGCATTGTC
ET0128037      <-- ..................................................
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
ET0035410      --> ATTCGATTCGTTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
ET0084214      --> ..........TTGCTAACAATCC-TGGAG-TGT--GGTTTATGCATTGTC
CT0061727      --> .............CTAACAATCCGTGGAGGTGTAGGGTTTATGCATTGTC
CT0063637      --> ............ctTAACAATCCGTGGAG-TGT--GGTTTATGCATTGTC
CT0048465      --> ...........ctaaacaAATCC-TGGAG-TGT--GGTTTATGCATTGTC
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1660   -   1710
RU05170        --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGT.............
RH41BF76       <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGT.............
ET0120529      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0034707      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0112396      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0104414      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0105838      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0107202      <-- ATTTGGAACGTCATGCTA-TTGGGGCATGAACACAGTACTTATTGTGAAG
ET0120669      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0104648      <-- ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
ET0128037      <-- ....................TGGGGCATGAACACAGTACTTATTGTGAAG
ET0132419      <-- ..................................................
CT0012863      <-- ..................................................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ATTTGGAACGTCATGCTAGTTGGGtccattcttcacaataagtaccgtgt
ET0035410      --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
ET0084214      --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0061727      --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0063637      --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0048465      --> ATTTGGAACGTCATGCTAGTTGGGGCATGAACACAGTACTTATTGTGAAG
CT0045745      --> ..................................................
ET0003811      --> ..................................................

               1710   -   1760
RU05170        --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- AATGGACCC-ACCAATGA................................
CT0034707      <-- AATGGACCCCACCAATGATACCAAGA........................
CT0112396      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCCCTGCAAACTTG
CT0104414      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0105838      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0107202      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
ET0120669      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0104648      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
ET0128037      <-- AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
ET0132419      <-- ............................CGACGACCCC--TGCAAACTTG
CT0012863      <-- .................................gaCCCC-TGCAAACTTG
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> t.................................................
ET0035410      --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
ET0084214      --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0061727      --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0063637      --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0048465      --> AATGGACCC-ACCAATGATACCAAGATCCGACGACCCCC-TGCAAACTTG
CT0045745      --> ........................................TGCAAACTTG
ET0003811      --> ..................................................

               1760   -   1810
RU05170        --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- CCAATCTGTGCCT.....................................
CT0104414      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0105838      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0107202      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
ET0120669      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0104648      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
ET0128037      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
ET0132419      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0012863      <-- CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATT....
ET0084214      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0061727      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0063637      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0048465      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
CT0045745      --> CCAATCTGTGCCTAGTGTTTGCAGAATATTTGGTTGGAGTGTTATTTGTG
ET0003811      --> ...........................................ATTTGTG

               1810   -   1860
RU05170        --> TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0105838      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0107202      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
ET0120669      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0104648      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
ET0128037      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
ET0132419      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0012863      <-- TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTA......
CT0061727      --> T.................................................
CT0063637      --> TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0048465      --> TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
CT0045745      --> TGTGTTTTTTAATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA
ET0003811      --> TGTGTTTTT-AATTATGAGAAAGTGAGTGTAAGCTAATGAATTACCAGAA

               1860   -   1910
RU05170        --> ATAATTCATGGG-AATTGCCC-AATTGGGAACCTATATATTGAATGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCaa...............
CT0105838      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCaa...............
CT0107202      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCaa...............
ET0120669      <-- ATAATTCATGGG-AATTGCCC-AATTGGG.....................
CT0104648      <-- ATAATTCATGGGGAATTGCCCCAATTGGGAACCaa...............
ET0128037      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCTATATATTGAATGGTGG
ET0132419      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCTATATATTGAATGGTGG
CT0012863      <-- ATAATTCATGGG-AATTGCCC-AATTGGGAACCTATATATTGAATGGTGG
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ATAATTCATGGG-A....................................
CT0048465      --> ATAATTCATGGGtaa...................................
CT0045745      --> ATAATTCATGGG-AATTGCCC-AATTGGGAACCT................
ET0003811      --> ATAATTCATGGG-AATTGCCC-AATTGGGAACCTATATATTGAATGGTGG

               1910   -   1960
RU05170        --> AAGAAAAACCTACTGTTCTTTTCGGCCAAAGACGCTAAATATCACCATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ..................................................
CT0098888      <-- ..................................................
CT0100537      <-- ..................................................
CT0099340      <-- ..................................................
ET0089937      <-- ..................................................
ET0027289      <-- ..................................................
ET0050924      <-- ..................................................
CT0003001      <-- ..................................................
CT0088229      <-- ..................................................
CT0139090      <-- ..................................................
CT0098314      <-- ..................................................
CT0047066      <-- ..................................................
ET0017630      <-- ..................................................
ET0137151      <-- ..................................................
ET0041303      <-- ..................................................
ET0105583      <-- ..................................................
CT0026177      <-- ..................................................
CT0020726      <-- ..................................................
CT0053402      <-- ..................................................
ET0078852      <-- ..................................................
CT0036208      <-- ..................................................
ET0050015      <-- ..................................................
ET0004151      <-- ..................................................
CT0008365      <-- ..................................................
CT0061842      <-- ..................................................
RH40BF13       <-- ..................................................
RH41BF76       <-- ..................................................
ET0120529      <-- ..................................................
CT0034707      <-- ..................................................
CT0112396      <-- ..................................................
CT0104414      <-- ..................................................
CT0105838      <-- ..................................................
CT0107202      <-- ..................................................
ET0120669      <-- ..................................................
CT0104648      <-- ..................................................
ET0128037      <-- AAGAAAAACCTACTGTTCTTTTCGGtac......................
ET0132419      <-- AAGAAAAACCTACTGTTCTTTTCGGTCAAAGACGCTAAATATCACCATAT
CT0012863      <-- AAGAAAAACCTACTGTTCTTTTCGGTCAAAaaaa................
ET0102833      --> ..................................................
ET0107322      --> ..................................................
ET0034251      --> ..................................................
CT0086189      --> ..................................................
CT0093348      --> ..................................................
CT0094699      --> ..................................................
ET0050728      --> ..................................................
ET0137380      --> ..................................................
ET0137964      --> ..................................................
ET0139294      --> ..................................................
RH55CA104      --> ..................................................
ET0014979      --> ..................................................
CT0093640      --> ..................................................
ET0070493      --> ..................................................
CT0039489      --> ..................................................
CT0038973      --> ..................................................
ET0009295      --> ..................................................
ET0117726      --> ..................................................
ET0056142      --> ..................................................
CT0133460      --> ..................................................
CT0134758      --> ..................................................
ET0148011      --> ..................................................
CT0133149      --> ..................................................
ET0044570      --> ..................................................
ET0051893      --> ..................................................
ET0057508      --> ..................................................
CT0027233      --> ..................................................
CT0099826      --> ..................................................
CT0101513      --> ..................................................
CT0102022      --> ..................................................
CT0102191      --> ..................................................
CT0099598      --> ..................................................
ET0012744      --> ..................................................
CT0107493      --> ..................................................
CT0107844      --> ..................................................
CT0079281      --> ..................................................
CT0065071      --> ..................................................
ET0035410      --> ..................................................
ET0084214      --> ..................................................
CT0061727      --> ..................................................
CT0063637      --> ..................................................
CT0048465      --> ..................................................
CT0045745      --> ..................................................
ET0003811      --> AAGAAAAACCTACTGTTCTTTTCGGCCAAAaaaaa...............

               1960   -   2010
RU05170        --> TAGTAGAAATTAATCAGGT
                   ~~~~~~~~~~~~~~~~~~~
ET0004361      <-- ...................
CT0098888      <-- ...................
CT0100537      <-- ...................
CT0099340      <-- ...................
ET0089937      <-- ...................
ET0027289      <-- ...................
ET0050924      <-- ...................
CT0003001      <-- ...................
CT0088229      <-- ...................
CT0139090      <-- ...................
CT0098314      <-- ...................
CT0047066      <-- ...................
ET0017630      <-- ...................
ET0137151      <-- ...................
ET0041303      <-- ...................
ET0105583      <-- ...................
CT0026177      <-- ...................
CT0020726      <-- ...................
CT0053402      <-- ...................
ET0078852      <-- ...................
CT0036208      <-- ...................
ET0050015      <-- ...................
ET0004151      <-- ...................
CT0008365      <-- ...................
CT0061842      <-- ...................
RH40BF13       <-- ...................
RH41BF76       <-- ...................
ET0120529      <-- ...................
CT0034707      <-- ...................
CT0112396      <-- ...................
CT0104414      <-- ...................
CT0105838      <-- ...................
CT0107202      <-- ...................
ET0120669      <-- ...................
CT0104648      <-- ...................
ET0128037      <-- ...................
ET0132419      <-- TAGTAGAAATTAATCAGGT
CT0012863      <-- ...................
ET0102833      --> ...................
ET0107322      --> ...................
ET0034251      --> ...................
CT0086189      --> ...................
CT0093348      --> ...................
CT0094699      --> ...................
ET0050728      --> ...................
ET0137380      --> ...................
ET0137964      --> ...................
ET0139294      --> ...................
RH55CA104      --> ...................
ET0014979      --> ...................
CT0093640      --> ...................
ET0070493      --> ...................
CT0039489      --> ...................
CT0038973      --> ...................
ET0009295      --> ...................
ET0117726      --> ...................
ET0056142      --> ...................
CT0133460      --> ...................
CT0134758      --> ...................
ET0148011      --> ...................
CT0133149      --> ...................
ET0044570      --> ...................
ET0051893      --> ...................
ET0057508      --> ...................
CT0027233      --> ...................
CT0099826      --> ...................
CT0101513      --> ...................
CT0102022      --> ...................
CT0102191      --> ...................
CT0099598      --> ...................
ET0012744      --> ...................
CT0107493      --> ...................
CT0107844      --> ...................
CT0079281      --> ...................
CT0065071      --> ...................
ET0035410      --> ...................
ET0084214      --> ...................
CT0061727      --> ...................
CT0063637      --> ...................
CT0048465      --> ...................
CT0045745      --> ...................
ET0003811      --> ...................