SNPs of unigene RU05184
               1      -     51
RU05184        --> GCACAGTATTACTATTCTAACCCGTGAACTGAAAAAAGGACACAAAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> GCACAGTATTACTATTCTAACCCGTGAACTGAAAAAAGGACACAAAGCTA
CT0068921      --> GCACAGTATTACTATTCTAACCCGTGAACTGAAAAAAGGACACAAAGCTA
CT0049547      --> .........................................tttttttta
CT0064140      --> ..........................................ttttttta
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               51     -    101
RU05184        --> GGCCACTCCCGTGAATATATGTCGGTACAAAGCTACAAACCATATCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- .............................................CAAAT
ET0020582      <-- .............................................CAAAT
ET0036806      <-- ..............................................AAAT
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> GGCCACTCCCGTGAATATATGTCGGTACAAAGCTACAAACCATATCAAAT
CT0068921      --> GGCCACTCCCGTGAATATATGTCGGTACAAAGCTACAAACCATATCAAAT
CT0049547      --> aGCCACTCCCGTGAATATATGTCGGTACAAAGCAACAAATCATATCAAAT
CT0064140      --> aGCCACTCCCGTGAATATATGTCGGTACAAAGCAACAAATCATATCAAAT
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               101    -    151
RU05184        --> TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
ET0020582      <-- TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
ET0036806      <-- TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
ET0062961      <-- ...........................................CCATAAT
ET0096352      <-- ...........................................CCATAAT
ET0100691      <-- ...........................................CCATAAT
ET0092966      <-- ............................................CATAAT
ET0092781      <-- .............................................ATAAT
ET0096924      <-- .............................................ATAAT
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
CT0068921      --> TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
CT0049547      --> TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
CT0064140      --> TTGGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
CT0031746      --> ..GGATCTTGTACTATTGCTAGTCCATCTTTTAAAAGTTATAGCCATAAT
ET0001953      --> .......................tttTCTTTTAAAAGTTATAGCCATAAT
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               151    -    201
RU05184        --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- AACACAAAGCTTTGTCACAACCCAATTCATCCAAGC..............
ET0020582      <-- AACACAAAGCTTTGTCACAACCCAATTCATCCAAGC..............
ET0036806      <-- AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0062961      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0096352      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0100691      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0092966      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0092781      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0096924      <-- AACACAAAGCTTTGTAACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
CT0068921      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
CT0049547      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
CT0064140      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
CT0031746      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
ET0001953      --> AACACAAAGCTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
CT0022231      --> ....ttttttTTTGTCACAACCCAATTCATCCAAGCAGAATACTAGAATA
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               201    -    251
RU05184        --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0062961      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0096352      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0100691      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0092966      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0092781      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0096924      <-- GTAATACTGTGCGCACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0026201      <-- ...ATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
CT0138174      <-- ......................................ACCAAACAGAGT
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
CT0068921      --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
CT0049547      --> GTAATACTGTGCGTACTAGTTAATACTAGG....................
CT0064140      --> GTAATACTGTGCGTACTAGTTAATACTAGG....................
CT0031746      --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0001953      --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
CT0022231      --> GTAATACTGTGCGTACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
RH28AD130      --> ..............ACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
RH28AD138      --> ..............ACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
RH29AD138      --> ..............ACTAGTTAATACTAGGCCCCAATGACCAAACAGAGT
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               251    -    301
RU05184        --> CATGGGATTTGGAAAATGATCGAACCAAACAAA-GGAGTTAGTTGCAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................  Ethylene
ET0020582      <-- ..................................................  Ethylene
ET0036806      <-- CATGGGATTTGGAAAATGATCGAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0062961      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0096352      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0100691      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0092966      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0092781      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0096924      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
ET0026201      <-- CATGGGATTTGGAAATTGATCGAACCAAACAAAAGGAGTTAGGTGCAGGT  Ethylene
CT0138174      <-- CATGGGATTTGGAAAATGATCAAACCAAACAAA-GGAGTTAGGTGCAGGT  Control
ET0111830      <-- ...................tcaAACCAAACAAA-GGAGTTAGGTGCAGGT  Ethylene
CT0045731      <-- ..................................................  Control
ET0059037      <-- ..................................................  Ethylene
CT0124912      <-- ..................................................  Control
ET0010301      <-- ..................................................  Ethylene
ET0052152      <-- ..................................................  Ethylene
CT0041223      <-- ..................................................  Control
ET0081941      <-- ..................................................  Ethylene
CT0063605      <-- ..................................................  Control
ET0111320      <-- ..................................................  Ethylene
ET0114016      <-- ..................................................  Ethylene
CT0021316      <-- ..................................................  Control
ET0141116      <-- ..................................................  Ethylene
CT0102155      <-- ..................................................  Control
CT0098802      <-- ..................................................  Control
CT0047979      <-- ..................................................  Control
CT0053323      <-- ..................................................  Control
CT0013216      <-- ..................................................  Control
CT0051518      --> CATGGG............................................  Control
CT0068921      --> CATGGG............................................  Control
CT0049547      --> ..................................................  Control
CT0064140      --> ..................................................  Control
CT0031746      --> CATGGGATTTGGAAAttg................................  Control
ET0001953      --> ..................................................  Ethylene
CT0022231      --> CATGGGATTTGGAAATTGATCGAACCAAACAAAAGGAGTTAGGTGCAGGT  Control
RH28AD130      --> CATGGGATTTGGAAAATGATCGAACCAAACAAA-GGAGTTAGTTGCAGGT  WaterDS
RH28AD138      --> CATGGGATTTGGAAAATGATCGAACCAAACAAA-GGAGTTAGTTGCAGGT  WaterDS
RH29AD138      --> CATGGGATTTGGAAAATGATCGAACCAAACAAA-GGAGTTAGTTGCAGGT  WaterDS
ET0120806      --> ..................................................  Ethylene
ET0110412      --> ..................................................  Ethylene
CT0130897      --> ..................................................  Control
ET0025229      --> ..................................................  Ethylene
CT0076196      --> ..................................................  Control
CT0074783      --> ..................................................  Control
ET0019540      --> ..................................................  Ethylene
CT0052692      --> ..................................................  Control
ET0042349      --> ..................................................  Ethylene
CT0119238      --> ..................................................  Control
CT0119573      --> ..................................................  Control
CT0119932      --> ..................................................  Control
CT0120403      --> ..................................................  Control
CT0120929      --> ..................................................  Control
CT0120965      --> ..................................................  Control
CT0121466      --> ..................................................  Control
CT0121504      --> ..................................................  Control
CT0121725      --> ..................................................  Control
CT0121898      --> ..................................................  Control
CT0122993      --> ..................................................  Control
CT0085550      --> ..................................................  Control
ET0074851      --> ..................................................  Ethylene
ET0004506      --> ..................................................  Ethylene
ET0010675      --> ..................................................  Ethylene

               301    -    351
RU05184        --> CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCc..
ET0062961      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0096352      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0100691      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0092966      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0092781      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0096924      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0026201      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
CT0138174      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0111830      <-- CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
CT0045731      <-- ........CAACACCAAGCCTTGAGTTGGGCACATCAATAAGCACCCTAT
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
RH28AD130      --> CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
RH28AD138      --> CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
RH29AD138      --> CTCACGGGCAACACCAAGCCTTGAGTTGGGCACATCAATCAGCACCCTAT
ET0120806      --> .......................................CAGCACCCTAT
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               351    -    401
RU05184        --> GATTCTGCTGC---ATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- GATTCTGCTGCTGCATGTTGGCAATCACAa....................
ET0096352      <-- GATTCTGCTGCTGCATGTTGGCAATCACA.....................
ET0100691      <-- GATTCTGCTGCTGCATGTTGGCAATCACA.....................
ET0092966      <-- GATTCTGCTGCTGCATGTTGGCAATCACA.....................
ET0092781      <-- GATTCTGCTGCTGCATGTTGGCAATCACA.....................
ET0096924      <-- GATTCTGCTGCTGCATGTTGGCAATCACA.....................
ET0026201      <-- GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
CT0138174      <-- GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
ET0111830      <-- GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCGAGTTCACATTT
CT0045731      <-- GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
ET0059037      <-- ..........C---ATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
CT0124912      <-- ................GTTGGCAATCACATTAAGAACCGAGTTCACATT-
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCG...........
RH28AD130      --> GATTCTGCTGC---ATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
RH28AD138      --> GATTCTGCTGC---ATGTTGGCAATCACATTAAGAAACGAGTTCACATT-
RH29AD138      --> GATTCTGCTGC---ATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
ET0120806      --> GATTCTGCTGCTGCATGTTGGCAATCACATTAAGAACCGAGTTCACATT-
ET0110412      --> ...........................CATTAAGAACCGAGTTCACATT-
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               401    -    451
RU05184        --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACTTGCCGTGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................  Ethylene
ET0020582      <-- ..................................................  Ethylene
ET0036806      <-- ..................................................  Ethylene
ET0062961      <-- ..................................................  Ethylene
ET0096352      <-- ..................................................  Ethylene
ET0100691      <-- ..................................................  Ethylene
ET0092966      <-- ..................................................  Ethylene
ET0092781      <-- ..................................................  Ethylene
ET0096924      <-- ..................................................  Ethylene
ET0026201      <-- GTCTGG............................................  Ethylene
CT0138174      <-- GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Control
ET0111830      <-- GTCTGGCGCCGC......................................  Ethylene
CT0045731      <-- GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Control
ET0059037      <-- GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Ethylene
CT0124912      <-- GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Control
ET0010301      <-- .................TGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Ethylene
ET0052152      <-- ...........................TGTGGTGCTACCTGCCGTGCTCC  Ethylene
CT0041223      <-- ............................................cGCTCC  Control
ET0081941      <-- ..................................................  Ethylene
CT0063605      <-- ..................................................  Control
ET0111320      <-- ..................................................  Ethylene
ET0114016      <-- ..................................................  Ethylene
CT0021316      <-- ..................................................  Control
ET0141116      <-- ..................................................  Ethylene
CT0102155      <-- ..................................................  Control
CT0098802      <-- ..................................................  Control
CT0047979      <-- ..................................................  Control
CT0053323      <-- ..................................................  Control
CT0013216      <-- ..................................................  Control
CT0051518      --> ..................................................  Control
CT0068921      --> ..................................................  Control
CT0049547      --> ..................................................  Control
CT0064140      --> ..................................................  Control
CT0031746      --> ..................................................  Control
ET0001953      --> ..................................................  Ethylene
CT0022231      --> ..................................................  Control
RH28AD130      --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACTTGCCGTGCTCC  WaterDS
RH28AD138      --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACTTGCCGTGCTCC  WaterDS
RH29AD138      --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACTTGCCGTGCTCC  WaterDS
ET0120806      --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Ethylene
ET0110412      --> GTCTGGCGCCGCTGCCATGGCCAAACATGTGGTGCTACCTGCCGTGCTCC  Ethylene
CT0130897      --> ..................................................  Control
ET0025229      --> ..................................................  Ethylene
CT0076196      --> ..................................................  Control
CT0074783      --> ..................................................  Control
ET0019540      --> ..................................................  Ethylene
CT0052692      --> ..................................................  Control
ET0042349      --> ..................................................  Ethylene
CT0119238      --> ..................................................  Control
CT0119573      --> ..................................................  Control
CT0119932      --> ..................................................  Control
CT0120403      --> ..................................................  Control
CT0120929      --> ..................................................  Control
CT0120965      --> ..................................................  Control
CT0121466      --> ..................................................  Control
CT0121504      --> ..................................................  Control
CT0121725      --> ..................................................  Control
CT0121898      --> ..................................................  Control
CT0122993      --> ..................................................  Control
CT0085550      --> ..................................................  Control
ET0074851      --> ..................................................  Ethylene
ET0004506      --> ..................................................  Ethylene
ET0010675      --> ..................................................  Ethylene

               451    -    501
RU05184        --> GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0111830      <-- ..................................................
CT0045731      <-- GGATCACTACGTTCT...................................
ET0059037      <-- GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
CT0124912      <-- GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0010301      <-- GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0052152      <-- GGATCACTACGTTCTCGATGGGCAGCagacgctcgaca............
CT0041223      <-- GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0081941      <-- .....ACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
RH28AD138      --> GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGA.......
RH29AD138      --> GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0120806      --> GGATCACTGCGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
ET0110412      --> GGATCACTACGTTCTCGATGGGCAGCGTCATGTTCATGCCCGAGAACATG
CT0130897      --> .............................................ACATG
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               501    -    551
RU05184        --> AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................  Ethylene
ET0020582      <-- ..................................................  Ethylene
ET0036806      <-- ..................................................  Ethylene
ET0062961      <-- ..................................................  Ethylene
ET0096352      <-- ..................................................  Ethylene
ET0100691      <-- ..................................................  Ethylene
ET0092966      <-- ..................................................  Ethylene
ET0092781      <-- ..................................................  Ethylene
ET0096924      <-- ..................................................  Ethylene
ET0026201      <-- ..................................................  Ethylene
CT0138174      <-- AAAGTGATCGTGGGCACAACGA............................  Control
ET0111830      <-- ..................................................  Ethylene
CT0045731      <-- ..................................................  Control
ET0059037      <-- AAAGTGATTGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Ethylene
CT0124912      <-- AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Control
ET0010301      <-- AAAGTGATCGTGGGCACAACGATCGGGGCAGTGTAGCACGTGTCGAACCC  Ethylene
ET0052152      <-- ..................................................  Ethylene
CT0041223      <-- AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Control
ET0081941      <-- AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Ethylene
CT0063605      <-- ....TGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Control
ET0111320      <-- .......TCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Ethylene
ET0114016      <-- ..................................................  Ethylene
CT0021316      <-- ..................................................  Control
ET0141116      <-- ..................................................  Ethylene
CT0102155      <-- ..................................................  Control
CT0098802      <-- ..................................................  Control
CT0047979      <-- ..................................................  Control
CT0053323      <-- ..................................................  Control
CT0013216      <-- ..................................................  Control
CT0051518      --> ..................................................  Control
CT0068921      --> ..................................................  Control
CT0049547      --> ..................................................  Control
CT0064140      --> ..................................................  Control
CT0031746      --> ..................................................  Control
ET0001953      --> ..................................................  Ethylene
CT0022231      --> ..................................................  Control
RH28AD130      --> AAAGTGATTGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  WaterDS
RH28AD138      --> ..................................................  WaterDS
RH29AD138      --> AAAGTGATTGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  WaterDS
ET0120806      --> AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Ethylene
ET0110412      --> AAAGTGATCGTGGGCACGACGATTGGGGCAGTGTAGCATGTGTCGAACCC  Ethylene
CT0130897      --> AAAGTGATCGTGGGCACAACGATCGGGGCAGTGTAGCACGTGTCGAACCC  Control
ET0025229      --> ..................................AGCATGTGTCGAACCC  Ethylene
CT0076196      --> ..................................................  Control
CT0074783      --> ..................................................  Control
ET0019540      --> ..................................................  Ethylene
CT0052692      --> ..................................................  Control
ET0042349      --> ..................................................  Ethylene
CT0119238      --> ..................................................  Control
CT0119573      --> ..................................................  Control
CT0119932      --> ..................................................  Control
CT0120403      --> ..................................................  Control
CT0120929      --> ..................................................  Control
CT0120965      --> ..................................................  Control
CT0121466      --> ..................................................  Control
CT0121504      --> ..................................................  Control
CT0121725      --> ..................................................  Control
CT0121898      --> ..................................................  Control
CT0122993      --> ..................................................  Control
CT0085550      --> ..................................................  Control
ET0074851      --> ..................................................  Ethylene
ET0004506      --> ..................................................  Ethylene
ET0010675      --> ..................................................  Ethylene

               551    -    601
RU05184        --> GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTtcttcct.........
CT0124912      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCG........
ET0010301      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0052152      <-- ..................................................
CT0041223      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0081941      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
CT0063605      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0111320      <-- GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
RH28AD138      --> ..................................................
RH29AD138      --> GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0120806      --> ..................................................
ET0110412      --> GCCAAGGGACGTCACCGGTAGCTTGCGG......................
CT0130897      --> GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
ET0025229      --> GCCAAGGGACGTCACCGGTAGCTTGCGGCCAACTCTCCTTCGGAACTCGT
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               601    -    651
RU05184        --> TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
ET0052152      <-- ..................................................
CT0041223      <-- TGCGGACTGCCTCGTTAGGTCGGGTTGTTCTACTAGACGAGTGAAAACAG
ET0081941      <-- TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACA.
CT0063605      <-- TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
ET0111320      <-- TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
RH28AD138      --> ..................................................
RH29AD138      --> TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
ET0025229      --> TGCGGACTGCCTCGT-AGG-CGGGT-GT-C-ACTAGACGAGTGAAAACAG
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               651    -    701
RU05184        --> TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- TGCCAGAATC........................................
ET0052152      <-- ..................................................
CT0041223      <-- TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGG.............
ET0081941      <-- ..................................................
CT0063605      <-- TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
ET0111320      <-- TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
ET0114016      <-- ..............ACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
RH28AD138      --> ..................................................
RH29AD138      --> TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> TGCCAGAATCAATGACTGTCCCTGCACCAG....................
ET0025229      --> TGCCAGAATCAATGACTGTCCCTGCACCAGTGGTGGGATTGAAAGCCAAA
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               701    -    751
RU05184        --> GCTGCTGGGGGGATATCAACAATTCTCCTTCCAACCCTAATTGCATTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- GCTGCTGGGGGGATATC.................................
ET0111320      <-- GCTGCTGGGGGGATATCAACAATTCTCCTTCCAACCCTAATT........
ET0114016      <-- GCTGCTGGGGGGATATCAACAATTCTCCTTCCAACCCTAATTGCATTTAA
CT0021316      <-- ..................ACAATTCTCCTTCCAACCCTAATTGCATTTAA
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> GCTGCTGGGGGGATATCAACAATTCTCCTTCCAACCCTAATTGCATTTAA
RH28AD138      --> ..................................................
RH29AD138      --> GCTGCTGGGGGGATATCAACAATTCTCCTTTCCACCCTAAATGCATTTAA
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> GCTGCTGGGGGGATAT..................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               751    -    801
RU05184        --> GTTGACATAATAGAGTGATGACCTCCTAGGGTTCTTGAGCAATGGGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- GTTGACATAATAGAGTGATGACCTCCTAGGGTTCTTGAGCAATGGGGTGT
CT0021316      <-- GTTCACATAATAGAGTGATGACCTCCTAGGGTTCTTGAGCAATGGGGTGT
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> GTTGACATAATAGAGTGATGACCTCCTAGGGTTCTTGAGCAATGGGGTGT
RH28AD138      --> ..................................................
RH29AD138      --> GTTGACATAATAGAGTGATGACCTCCTAGGGGTTCTGAGCAATGGG....
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ................tATGACCTCCTAGGGTTCTTGAGCAATGGGGTGT
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               801    -    851
RU05184        --> ACTTGATCCTAATGGGCTGCCCAACAGTTCCAAGCCTCAGTGACCCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ACTTGATCCTAATGGGCTGCCCAACAGTTCCAAGCCTCAGTGACCCAGAG
CT0021316      <-- ACTTGATCCTAATGGGCTGCCCAACAGTTCCAAGCCTCAGTGACCCAGAG
ET0141116      <-- .......................ACAGT-CCAAGCCTCAGTGACCCAGAG
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ACTTGATCCTAATGGGCTGCCCAACAGTTCCAAGCCTCAGTGACCCAGAG
CT0074783      --> ..........................................ACCCAGAG
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               851    -    901
RU05184        --> AAGTTCAGTGACTTGTAGCCAGGG-AGGCAGTATGAGAATGTGGATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- AAGTTCAGTGACTTGTAGCCAGGG-AGGCAGTATGAGAATGTGGATTTGT
CT0021316      <-- AAGTTCAGTGACTTGTAGCCAGGG-AGGCAGTATGAGAATGTGGATTTGT
ET0141116      <-- AAGTTCAGTGACTTGTAGCCAGGG-AGGCAGTATGAGAATGTGGATTGGT
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> AAGTTCAGTGACTTGTAGCCAGGGGAGGCAGTATGAGAATGTGGATTTGT
CT0074783      --> AAGTTCAGTGACTTGTAGCCAGGG-AGGCAGTATGAGAATGTGGATTGGT
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               901    -    951
RU05184        --> AG-AGGTTTTGTGTC-TGGGACAGAAGCGACAACGGCCCTCGGCCAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- AG-AGG............................................
CT0021316      <-- AG-AGGTTTTGTGTC-TGGGACAGAAGCGACAACGGCCCTCG........
ET0141116      <-- AG-AGGTTTTGAGTC-TGGGACAGAAGCGACAACGGCCCTCGGCCAAGAC
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> AGTAGGTTTTGTGTCGTGGGACAGA-GCGACAACGGC.............
CT0074783      --> AG-AGGTTTTGAGTC-TGGGACAGAAGCGACAACGGCCCTCGGCCAAGAC
ET0019540      --> ...AGGTTTTGTGTC-TGGGACAGAAGCGACAACGGCCCTCGGCCAAGAC
CT0052692      --> .................................CGGCCCTCGGCCAAGAC
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               951    -   1001
RU05184        --> CCAGAAGACCCTGCGGCGGCACTGAGCTGCCGGTGGTTTTTTGGATGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- CCAGAAGACCCTGCGGAGGCACTGAGCTGCCGGTGGTCTTCTGGATGCAA
CT0102155      <-- .CAGAAGACCCTGCGGCGGCACTGAGCTGCCGGTGGTTTTTTGGATGCAA
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> CCAGAAGACCCTGCGGAGGCACTGAGCTGCCGGTGGTCTTCTGGATGCAA
ET0019540      --> CCAGAAGACCCTGCGGCGGCACTGAGCTGCCGGTGGTTTTTTGGATGCAA
CT0052692      --> CCAGAAGACCCTGCGGCGGCACTGAGCTGCCGGTGGTTTTTTGGATGCAA
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1001   -   1051
RU05184        --> CCAAAGGTGTAGGCAGGTACGGCATCGTTGGCTAGGGTGAAGGTTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- CCAAAGGTGTAGGCAGGTACGGCATCGTTGGCTAGGGTGAAGGTTTCTTG
CT0102155      <-- CCAAAGGTGTAGGCAGGTAAGGCATCGTTGGCTAGGGTGAAGGTTTCTTG
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> CCAAAGGTGTAGGCAGGTAAGGCATCGTTGGCTAGGGTGAAGGTTTCTTG
CT0052692      --> CCAAAGGTGTAGGCAGGTAAGGCATCGTTGGCTAGGGTGAAGGTTTCTTG
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1051   -   1101
RU05184        --> TGACAGGTTTGATGCAATGGTGGAACCTCCATAGGTAACGTTGAAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- TGACAGGTTTG.......................................
CT0102155      <-- TGACAGGTTTGATGCAATGGTGGAACCTCCATAGGTAACGTTGAAGCTGC
CT0098802      <-- ........................................ttaAAGCTGC
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> TGACAGGTTTGATGCAATGGTGGAACCTCCATAGGTAACGTTGAAGCTGC
CT0052692      --> TGACAGGTTTGATGCAATGGTGGAACCTCCATAGGTAACGTTGAAGCTGC
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1101   -   1151
RU05184        --> AGGTGCTTCCAAGACAGCTGGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- AGGTGCTTCCA.......................................
CT0098802      <-- AGGTGCTTCCGAGGCAGCTGGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> AGGTGCTTCCAAGACAGCTGGGGGTTGGG-TGCC-TGCTTGCACTGAGGT
CT0052692      --> AGGTGCTTCCAAGA....................................
ET0042349      --> .............ACAGCTGGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0119238      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0119573      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0119932      --> ...................GGGG-TTGGG-TGCCGTGCTTGCACTGAGGT
CT0120403      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0120929      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0120965      --> ...................GGGG-TTGGGGTGCC-TGCTTGCACTGAGGT
CT0121466      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0121504      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0121725      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0121898      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0122993      --> ...................GGGG-TTGGG-TGCC-TGCTTGCACTGAGGT
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1151   -   1201
RU05184        --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- GCTCCACAACCAACGGACTTGAAGGTGGTGGATTTGAGAGAGTTTAAAGG
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> GCTCCA............................................
CT0052692      --> ..................................................
ET0042349      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0119238      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0119573      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0119932      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0120403      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0120929      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0120965      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0121466      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0121504      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0121725      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0121898      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0122993      --> GCTCCACAACCAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
CT0085550      --> ..........CAATGGACTTGAAGGTGGTGGATTTGAGAGAGTT-AAAGA
ET0074851      --> .......................GGTGGTGGATTTGAGAGAGTT-AAAGA
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1201   -   1251
RU05184        --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- CATTGGAAGAGCAGCCAACGCAGCCATTGCAAGGAACCCAAGCAGCATCA
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0119238      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0119573      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0119932      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0120403      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0120929      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0120965      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0121466      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0121504      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0121725      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0121898      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0122993      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
CT0085550      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
ET0074851      --> CATTGGAAGAGCAGCCAACGCAGCCACTGCAAGGAACCCAAGCAGCATCA
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1251   -   1301
RU05184        --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- C.................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0119238      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0119573      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0119932      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATAT.
CT0120403      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0120929      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0120965      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATAT.
CT0121466      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATAT.
CT0121504      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0121725      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0121898      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0122993      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
CT0085550      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
ET0074851      --> CTGCTGGTGTCCACAGCCATGAGCAAAGTCTGAGGTGGAGTCCCAATATT
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1301   -   1351
RU05184        --> GGCCCTCACAATGTACGTGGGGCTCTGAATGATCTGTCGTCCGGACGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ..................................................
CT0053323      <-- ..................................................
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> GGCCCTCACAATGTACGTGGGGCTCTGAATGATCTGTCcg..........
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> GGCCCTCACAATGTACG.................................
ET0074851      --> GGCCCTCACAATGTACGTGGGGCTCTGAATGATCTGTCGTCCGGACGCAA
ET0004506      --> ................................TCTGTCGTCCGGACGCAA
ET0010675      --> ................................TCTGTCGTCCGGACGCAA

               1351   -   1401
RU05184        --> TGGGGACGATAGATTTCTTAACCCCGGCGAGGCTGGCCAAGAATTGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- ...................................ccgAAGAATTGGAGC
CT0053323      <-- ....................................ccgAGAATTGGAGC
CT0013216      <-- ..................................................
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> TGGGGACGATAGATTTCTTAACCCCGGCGAGGCTGG..............
ET0004506      --> TGGGGACGATAGATTTCTTAACCCCGGCGAGGCTGGCCAAGAATTGGAGC
ET0010675      --> TGGGGACGATAGATTTCTTAACCCCGGCGAGGCTGGCCAAGAATTGGAGC

               1401   -   1451
RU05184        --> CTGGCCTGGTCCTTGGACAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- CTGGCCTGGTCCTTGGCCAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG
CT0053323      <-- CTGGCCTGGTCCTTGGCCAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG
CT0013216      <-- .............TGGCCAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> CTGGCCTGGTCCTTGGCCAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG
ET0010675      --> CTGGCCTGGTCCTTGGCCAGCGTTTGGAGCACGTACTCCTCCCAGGGAGG

               1451   -   1501
RU05184        --> AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAG-CATGGACTGTAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAGGCATGGACTGTAGAAA
CT0053323      <-- AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAGGCATGGACTGTAGAAA
CT0013216      <-- AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAG-CATGGACTGTAGAAA
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAG................
ET0010675      --> AGGACGTGCGTACTTTGCGGATCCGAAGGGGGAG................

               1501   -   1551
RU05184        --> TGGAAGACTTGGAGGTTAGAGCCGTGGTCGTTGGTGGCGCTGCATTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- TGGAAGACTTGGAGGTTAGAGCCGTGGTCGTTGGTGGCGCTGCATTTGGG
CT0053323      <-- TGGAAGACTTGGAGGTTAGAGCCGTGGTCGTTGGTGGCGCTGCATTTGGG
CT0013216      <-- TGGAAGACTTGGAGGTTAGAGCCGTGGTCGTTGGTGGCGCTGCATTTGGG
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1551   -   1601
RU05184        --> GTCTGGGTTGTTGAGGGCTTGGGCAGCTAAGGAGAAGCAGAGGAAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................................
ET0020582      <-- ..................................................
ET0036806      <-- ..................................................
ET0062961      <-- ..................................................
ET0096352      <-- ..................................................
ET0100691      <-- ..................................................
ET0092966      <-- ..................................................
ET0092781      <-- ..................................................
ET0096924      <-- ..................................................
ET0026201      <-- ..................................................
CT0138174      <-- ..................................................
ET0111830      <-- ..................................................
CT0045731      <-- ..................................................
ET0059037      <-- ..................................................
CT0124912      <-- ..................................................
ET0010301      <-- ..................................................
ET0052152      <-- ..................................................
CT0041223      <-- ..................................................
ET0081941      <-- ..................................................
CT0063605      <-- ..................................................
ET0111320      <-- ..................................................
ET0114016      <-- ..................................................
CT0021316      <-- ..................................................
ET0141116      <-- ..................................................
CT0102155      <-- ..................................................
CT0098802      <-- ..................................................
CT0047979      <-- GTCTGGGTTGTTGAGGGCTTGGGCAGCTAAGGAGAAGCAGAGGAAGGAGA
CT0053323      <-- GTCTGGGTTGTTGAGGGCTTGGGCAGCTAAGGAGAAGCAGAGGAAGGAGA
CT0013216      <-- GTCTGGGTTGTTGAGGGCTTGGGCAGCTAAGGAGAAGCAGAGG.......
CT0051518      --> ..................................................
CT0068921      --> ..................................................
CT0049547      --> ..................................................
CT0064140      --> ..................................................
CT0031746      --> ..................................................
ET0001953      --> ..................................................
CT0022231      --> ..................................................
RH28AD130      --> ..................................................
RH28AD138      --> ..................................................
RH29AD138      --> ..................................................
ET0120806      --> ..................................................
ET0110412      --> ..................................................
CT0130897      --> ..................................................
ET0025229      --> ..................................................
CT0076196      --> ..................................................
CT0074783      --> ..................................................
ET0019540      --> ..................................................
CT0052692      --> ..................................................
ET0042349      --> ..................................................
CT0119238      --> ..................................................
CT0119573      --> ..................................................
CT0119932      --> ..................................................
CT0120403      --> ..................................................
CT0120929      --> ..................................................
CT0120965      --> ..................................................
CT0121466      --> ..................................................
CT0121504      --> ..................................................
CT0121725      --> ..................................................
CT0121898      --> ..................................................
CT0122993      --> ..................................................
CT0085550      --> ..................................................
ET0074851      --> ..................................................
ET0004506      --> ..................................................
ET0010675      --> ..................................................

               1601   -   1651
RU05184        --> GTGAGAAGAGGTAGGAGAGAGATGCCATGGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018174      <-- ..................................
ET0020582      <-- ..................................
ET0036806      <-- ..................................
ET0062961      <-- ..................................
ET0096352      <-- ..................................
ET0100691      <-- ..................................
ET0092966      <-- ..................................
ET0092781      <-- ..................................
ET0096924      <-- ..................................
ET0026201      <-- ..................................
CT0138174      <-- ..................................
ET0111830      <-- ..................................
CT0045731      <-- ..................................
ET0059037      <-- ..................................
CT0124912      <-- ..................................
ET0010301      <-- ..................................
ET0052152      <-- ..................................
CT0041223      <-- ..................................
ET0081941      <-- ..................................
CT0063605      <-- ..................................
ET0111320      <-- ..................................
ET0114016      <-- ..................................
CT0021316      <-- ..................................
ET0141116      <-- ..................................
CT0102155      <-- ..................................
CT0098802      <-- ..................................
CT0047979      <-- GTGAGAAGAGGTAGGAGAGAGATGCCATGGCTCA
CT0053323      <-- GTGAGAAGAGGTAGGAGAGAGATGCCATGGCTCA
CT0013216      <-- ..................................
CT0051518      --> ..................................
CT0068921      --> ..................................
CT0049547      --> ..................................
CT0064140      --> ..................................
CT0031746      --> ..................................
ET0001953      --> ..................................
CT0022231      --> ..................................
RH28AD130      --> ..................................
RH28AD138      --> ..................................
RH29AD138      --> ..................................
ET0120806      --> ..................................
ET0110412      --> ..................................
CT0130897      --> ..................................
ET0025229      --> ..................................
CT0076196      --> ..................................
CT0074783      --> ..................................
ET0019540      --> ..................................
CT0052692      --> ..................................
ET0042349      --> ..................................
CT0119238      --> ..................................
CT0119573      --> ..................................
CT0119932      --> ..................................
CT0120403      --> ..................................
CT0120929      --> ..................................
CT0120965      --> ..................................
CT0121466      --> ..................................
CT0121504      --> ..................................
CT0121725      --> ..................................
CT0121898      --> ..................................
CT0122993      --> ..................................
CT0085550      --> ..................................
ET0074851      --> ..................................
ET0004506      --> ..................................
ET0010675      --> ..................................