SNPs of unigene RU05290
               1      -     51
RU05290        --> TTTTTTTTTAAAACAAATCCTTCTTCCATTTCCTTCTTTGTAAATTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- .............................TTCCTTCTTTGTAAATTTACA
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> TTTTTTTTTAAAACAAATCCTTCTTCCATTTCCTTCTTTGTAAATTTACA
ET0097606      --> TTTTTTTTTAAAACAAATCCTTCTTCCATTTCCTTCTTTGTAAATTTACA
ET0099772      --> TTTTTTTTTAAAACAAATCCTTCTTCCATTTCCTTCTTTGTAAATTTACA
CT0057177      --> .........AAAACAAATCCTTCTTCCATTTCCTTCTTTGTAAATTTACA
ET0096008      --> ................................CTTCTTTGTAAATTTACA
RH53BX61       --> ..................................................
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               51     -    101
RU05290        --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
ET0097606      --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
ET0099772      --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
CT0057177      --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
ET0096008      --> TTTGTTGGCATTGTTGCTTTTGTTACATTTGAACTGATAACATTTTATTC
RH53BX61       --> ..................................................
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               101    -    151
RU05290        --> CAATGGAATGACGGTATTTAAGGTACAAATTAATTGATTTAGTTCAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- CAATGGAATGACGGTATTTAAGGTACAAATTAATTGATTTAGTTCAGATG
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> CAATGGAATGACGGTATTTAAGG...........................
ET0097606      --> CAATGGAATGACGGTATTTAAGG...........................
ET0099772      --> CAATGGAATGACGGTATTTAAGG...........................
CT0057177      --> CAATGGAATGACGGTATTTAAGGTACAAATTAATTGATTTAGTTCAGATG
ET0096008      --> CAATGGAATGACGGTATTTAAG............................
RH53BX61       --> ........................ACAAATTAATTGATTTAGTTCAGATG
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               151    -    201
RU05290        --> ATTCCTCCAACTATTCAGAGCGCATATTCAGAATGAATGGACTTCACTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ATTCCTCCAACTATTCAGAGCGCATATTCAGAATGAATGGACTTCACTGT
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ATTCCTCCAACTATTCAGAGCGCATATTCAGAATGAATGGACTTCACTGT
ET0096008      --> ..................................................
RH53BX61       --> ATTCCTCCAACTATTCAGAGCGCATATTCAGAATGAATGGACTTCACTGT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               201    -    251
RU05290        --> GAATCCTTACTCCTCCTTAATACTGAAGAGAACACTGCCATCAGAAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- GAATCCTTcttccatttccttcttt.........................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> GAATCCTTACTCCTCCTTAATACTGAAGAGAACACTGCCATCAGAA....
ET0096008      --> ..................................................
RH53BX61       --> GAATCCTTACTCCTCCTTAATACTGAAGAGAACACTGCCATCAGAAACCT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               251    -    301
RU05290        --> GCTGGCCAGCTGCTAGATGAAGCCCGTGGACATAGCCTGCTGACGGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GCTGGCCAGCTGCTAGATGAAGCCCGTGGACATAGCCTGCTGACGGTGCT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               301    -    351
RU05290        --> TTTACAACATGCTCCATCTTCATTGCCTCTAATACTAAAATAGGTTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> TTTACAACATGCTCCATCTTCATTGCCTCTAATACTAAAATAGGTTGTCC
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               351    -    401
RU05290        --> TTCCTCCACTTTTGTTGCATCCTTAATAAGAA-CCTTGACCACCAAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ............ttTTGCATCCTTAATAAGAA-CCTTGACCACCAAACCA
ET0037888      <-- .............tTTGCATCCTTAATAAGAAACCTTGACCACCAAACCA
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> TTCCTCCACTTTTGTTGCATCCTTAATAAGAA-CCTTGACCACCAAACCA
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               401    -    451
RU05290        --> GCCATGGGTGCAACAACTGTTCCCGGAGGATGAGATGATCTATCAAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- GCCATGGGTGCAACAACTGTTCCCGGAGGATGAGATGATCTATCAAAACT
ET0037888      <-- GCCATGGGTGCAACAACTGTTCCCGGAGGATGAGATGATCTATCAAAACT
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GCCATGGGTGCAACAACTGTTCCCGGAGGATGAGATGATCTATCAAAACT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               451    -    501
RU05290        --> GGGCCTATGTTCGGTTTCATCTTCATCGGACAATTCAAGACCCAATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- GGGCCTATGTTCGGTTTCATCTTCATCGGACAATTCAAGACCCAATTTTT
ET0037888      <-- GGGCCTATGTTCGGTTTCATCTTCATCGGACAATTCAAGACCCAATTTTT
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> AGGCCTATGTTCGGTTTCATCTTCATCGGACAATTCAAGACCCAATTTTT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               501    -    551
RU05290        --> GTCTATAATGATGATGATGTGACCCATGCCACAGATGAATGTGCTTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- GTCTATAATGATGATGATGTGACCCATGCCACAGATGAATGTGCTTGGTC
ET0037888      <-- GTCTATAATGATGATGATGTGACCCATGCCACAGATGAATGTGCTTGGTC
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GTCTATAATGATGATGATGTGACCCATGCCACAGATGAATGTGCTTGGTC
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               551    -    601
RU05290        --> TGATCCTTCGAGTAAACAGCTAAGTTAACATCCATGATTACACCATCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- TGATCCTTCGAGTAAACAGCTAAGCTAACATCCATGATTACAC.......
ET0037888      <-- TGATCCTTCGAGTAAACAGCTAAGCTAACATCCATGATTACAC.......
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> TGATCCTTCGAGTAAACAGCTAAGTTAACATCCATGATTACACCATCAGC
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               601    -    651
RU05290        --> TTCAACTCTGAAATCATGATCACCCACACAAGTTGCTTTAACCTCCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> TTCAACTCTGAAATCATGATCACCCACACAAGTTGCTTTAACCTCCAAAG
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               651    -    701
RU05290        --> GTGGGGAAATGTCTTCTTCTGTCTGCACACAAAGATGCAGCATCTCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GTGGGGAAATGTCTTCTTCTGTCTGCACACAAAGATGCAGCATCTCAATT
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               701    -    751
RU05290        --> AGATAGCTCCCATCAGATTTGTAAGTGATGGAATAGGTCAATAACCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> AGATAGCTCCCATCAGATTTGTAAGTGATGGAATAGGTCAATAACCTTGA
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               751    -    801
RU05290        --> GCCACTGCTATCATATTCATTCTCCCACTCGAGTTCCATTGTATGCCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GCCACTGCTATCATATTCATTCTCCCACTCGAGTTCCATTGTATGCCTAG
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               801    -    851
RU05290        --> CACAATGATTGACTCTGAAAGGCGGAGAAGAATACCATATGGAGATCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> CACAATGATTGACTCTGAAAGGCGGAGAAGAATACCATATGGAGATCGTG
CT0063257      --> ........................................GGAGATCGTG
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               851    -    901
RU05290        --> TTGTTGCTTCCAGGAAGATTTTCTCTGAATACAGAATTTTCCTTTTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> TTGTTGCTTCCAGGAAGATTTTCTCTGAATACAGAATTTTCCTTTTCAAT
CT0063257      --> TTGTTGCTTCCAGGAAGATTTTCTCTGAATACAGAATTTTCCTTTTCAAT
CT0088793      --> ..............................................CAAT
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               901    -    951
RU05290        --> GAGACATGCAGCCGCCAGTTTGGCAACAAATCTAGCAGCACCAAGCACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> GAAACATGCAGCCGCCAGTTTGGCAACAAAT...................
CT0063257      --> GAGACATGCAGCCGCCAGTTTGGCAACAAATCTAGCAGCACCAAGCACTG
CT0088793      --> GAGACATGCAGCCGCCAGTTTGGCAACAAATCTAGCAGCACCAAGCACTG
ET0010323      --> .....................................GCACCAAGCACTG
ET0032208      --> .....................................GCACCAAGCACTG
ET0045390      --> .....................................GCACCAAGCACTG
ET0020505      --> ..................................gtctacctAAGCACTG

               951    -   1001
RU05290        --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- ..................................................
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
CT0088793      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
ET0010323      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
ET0032208      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
ET0045390      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA
ET0020505      --> TGTTCATTACTTCCAAATTACTAGGGTTGACAAACAGGTCATCTTTAAAA

               1001   -   1051
RU05290        --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTT-CAAATTCCCGATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................TCCACATTCCCATTTT-CAAATTCCCGATGGT
CT0135409      <-- .............................................ATGGT
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTT-CAAATTCCCGATGGT
CT0088793      --> TGTTCAATAAAATGAGTTTCCACA..........................
ET0010323      --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTTTCAAATTCCCGATGGT
ET0032208      --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTT-CAAATTCCCGATGGT
ET0045390      --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTT-CAAATTCCCGATGGT
ET0020505      --> TGTTCAATAAAATGAGTTTCCACATTCCCATTTTTCAAATTCCCGATGGT

               1051   -   1101
RU05290        --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCGACCTGA
CT0135409      <-- TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA
CT0080934      <-- ..................................................
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTG........
CT0088793      --> ..................................................
ET0010323      --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA
ET0032208      --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA
ET0045390      --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA
ET0020505      --> TGGCAAGTTTTGACAGAAAACTGATGTTGGTTGGTACACCTGCAACCTGA

               1101   -   1151
RU05290        --> AACTTT-GTTCAAGACAA-TACCTTCAGTTTTACCAGTGCTACTGCACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................  Control
ET0014350      <-- ..................................................  Ethylene
ET0037888      <-- ..................................................  Ethylene
CT0030788      <-- AACTTT-GT-CAAG-CAA-T-CCTTCAGTTTTACCAGTGCTACTGCACGA  Control
CT0135409      <-- AACTTT-GT-CAAG-CAA-T-CCTTCAGTTTTACCAGTGCTACTGCACGA  Control
CT0080934      <-- ...............................TACCAGTGCTACTGCACGA  Control
ET0081304      --> ..................................................  Ethylene
ET0097606      --> ..................................................  Ethylene
ET0099772      --> ..................................................  Ethylene
CT0057177      --> ..................................................  Control
ET0096008      --> ..................................................  Ethylene
RH53BX61       --> ..................................................  WaterDS
CT0063257      --> ..................................................  Control
CT0088793      --> ..................................................  Control
ET0010323      --> A.................................................  Ethylene
ET0032208      --> AACTTT-GTTCAAGACAA-TACCTTCctagtttt................  Ethylene
ET0045390      --> AACTTT-GTTCAAGACAACTACCTTCctagttt.................  Ethylene
ET0020505      --> AACTTTAGTTCAAGACA.................................  Ethylene

               1151   -   1201
RU05290        --> TTTTCTCCCCATACTACAAGCTTGGCAATCATAGGATCATAATGCATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- TTTTCTCCCCATACTACAAGCTTGGCAATCATAGGATCATAATGCATGCT
CT0135409      <-- TTTTCTCCCCATACTACAAGCTTGGCAATCATAGGATCATAATGCATGCT
CT0080934      <-- TTTTCTCCCCATACTACAAGCTTGGCAATCATAGGATCATAATGCATGCT
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               1201   -   1251
RU05290        --> AACACTGTCTCCTTGTTCAACTCCAGTCTCAACTCGAACTGATGGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- AACACTGTCTCCTTGTTCAACTCCAGTCTC....................
CT0135409      <-- AACACTGTCTCCTTGTTCAACTCCAGTCTCAACTCGAACTGATGGTGAAA
CT0080934      <-- AACACTGTCTCCTTGTTCAACTCCAGTCTCAACTCGAACTGATGGTGAAA
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               1251   -   1301
RU05290        --> CTGGAGCATGCTGATAGTGATGAAGAACTCCAGTTGCAGGAAGGAACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0012305      <-- ..................................................
ET0014350      <-- ..................................................
ET0037888      <-- ..................................................
CT0030788      <-- ..................................................
CT0135409      <-- CT................................................
CT0080934      <-- CTGGAGCATGCTGATAGTGATGAAGAACTCCAGTTGCAGGAAGGAACCCT
ET0081304      --> ..................................................
ET0097606      --> ..................................................
ET0099772      --> ..................................................
CT0057177      --> ..................................................
ET0096008      --> ..................................................
RH53BX61       --> ..................................................
CT0063257      --> ..................................................
CT0088793      --> ..................................................
ET0010323      --> ..................................................
ET0032208      --> ..................................................
ET0045390      --> ..................................................
ET0020505      --> ..................................................

               1301   -   1351
RU05290        --> TTTGGT
                   ~~~~~~
CT0012305      <-- ......
ET0014350      <-- ......
ET0037888      <-- ......
CT0030788      <-- ......
CT0135409      <-- ......
CT0080934      <-- TTTGGT
ET0081304      --> ......
ET0097606      --> ......
ET0099772      --> ......
CT0057177      --> ......
ET0096008      --> ......
RH53BX61       --> ......
CT0063257      --> ......
CT0088793      --> ......
ET0010323      --> ......
ET0032208      --> ......
ET0045390      --> ......
ET0020505      --> ......