SNPs of unigene RU05295
               1      -     51
RU05295        --> CAACCACCCCCTTTCCCCCCACCCTTCCTTTGTTATAGAACCGCCCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> CAACCACCCCCTTTCCCCCCACCCTTCCTTTGTTATAGAACCGCCCCCCA
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               51     -    101
RU05295        --> CCACCACCTCCTCCTTGCATTGAATTACCCCCGCCGCCGCCCCCGCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> CCACCACCTCCTCCTTGCATTGAATTACCCCCGCCGCCGCCCCCGCCATC
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               101    -    151
RU05295        --> ACCACCACCATGTCCTGAGTCCTGGGCGCCGCCACCACCTACCTACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ACCACCACCATGTCCTGAGTCCTGGGCGCCGCCACCACCTACCTACCATC
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               151    -    201
RU05295        --> ACTTGCCACCACCATCTCCTTCACCGCCACCAACACCAGTGTATGAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ...........CCATCTCCTTCACCGCCACCAACACCAGTGTATGAGTCT
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ACTTGCCACCACCATCTCCTTCACCGCCACCAACACCAGTGTATGAGT..
ET0147700      --> ..............tgtcgagcgtctCCACCAACACCAGTGTATGAGTCT
CT0062334      --> ................................ACACCAGTGTATGAGTCT
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               201    -    251
RU05295        --> CCTCCCCCACCTCCGGTCCACCATTCACCACCACCACCGGTTTATCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- CCTCCCCCACCTCCGGTCCACCATTCACCACCACCACCGGTTTATCAATA
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> CCTCCCCCACCTCCGGTCCACCATTCACCACCACCACCGGTTTATCAATA
CT0062334      --> CCTCCCCCACCTCCGGTCCACCATTCACCACCACCACCGGTTTATCAATA
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               251    -    301
RU05295        --> CAGTTCTCCACCGCCACCAAATTCACCTCCTCCATGTGTTGAAGCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- CAGTTCTCCACCGCCACCAAATTCACCTCCTCCATGTGTTGAAGCAAGCC
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> CAGTTCTCCACCGCCACCAAATTCACCTCCTCCATGTGTTGAAGCAAGCC
CT0062334      --> CAGTTCTCCACCGCCACCAAATTCACCTCCTCCATGTGTTGAAGCAAGCC
ET0090300      --> .......................CACCTCCTCCATGTGTTGAAGCAAGCC
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               301    -    351
RU05295        --> CGCCGCCTCCCACTCCTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- CGCCGCCTCCCACTCCTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> CGCCGCCTCCCACTCCTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
CT0062334      --> CGCCGCCTCCCACTCCTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
ET0090300      --> CGCCGCCTCCCACTCCTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
ET0060773      --> ...............CTGTATATGAGGGCCCATTGCCACCAGTCTTTGGA
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               351    -    401
RU05295        --> GTTTCATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- GTTTCAT...........................................
CT0017316      <-- ..........................................TTTTGAGA
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> GTTTCATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
CT0062334      --> GTTTCATACGCATCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
ET0090300      --> GTTTCATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
ET0060773      --> GTTTCATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
CT0013278      --> ...TCATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
CT0005559      --> .....ATACGCGTCTCCTCCGCCACCACCCTTCTATTGATTCTTTTGAGA
CT0065710      --> .................ccgtCCACCACCCTTCTATTGATTCTTTTGAGA
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               401    -    451
RU05295        --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0062334      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAA.............
ET0090300      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
ET0060773      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0013278      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0005559      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0065710      --> ATTTTCCTCCTCTAACCTTTCCTGGAGCACCAACAAACTCAGCGTCATTG
CT0065614      --> ..................................AAACTCAGCGTCATTG
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               451    -    501
RU05295        --> GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGGAAAA-CAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................  Control
CT0017316      <-- GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGGAAAA-CAAAACA  Control
CT0033518      <-- ..................................................  Control
CT0068168      <-- ..................................................  Control
ET0017377      <-- ..................................................  Ethylene
CT0087001      <-- ..................................................  Control
CT0009871      <-- ..................................................  Control
ET0001134      <-- ..................................................  Ethylene
CT0091491      <-- ..................................................  Control
CT0118481      <-- ..................................................  Control
CT0039754      <-- ..................................................  Control
CT0112488      --> ..................................................  Control
ET0147700      --> GCATTTTCTCTGTTGGGCAATTCTCATCG.....................  Ethylene
CT0062334      --> ..................................................  Control
ET0090300      --> GCATTTTCTCTGTTGGGCAATTCTCATCGCTCAGTGGG............  Ethylene
ET0060773      --> GCATTTTCTCTGTTGGGCAATTCTCATCGCTCAGTGGGAAAAACAAAA-A  Ethylene
CT0013278      --> GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGGAAAA-CAAAA--  Control
CT0005559      --> GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGG............  Control
CT0065710      --> GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGGAAAA-CAAAACA  Control
CT0065614      --> GCATTTTCTCTTTTGGGCAATTCTCATCGCTCAGTGGGAAAA-CAAAACA  Control
ET0136027      --> ..................................................  Ethylene
ET0060040      --> ..................................................  Ethylene
CT0122224      --> ..................................................  Control

               501    -    551
RU05295        --> AAAAAAATTTGTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- AAAAAAATTTGTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> AAAAAAAT--GTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
CT0013278      --> --AAAAAT--GTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
CT0005559      --> ..................................................
CT0065710      --> AAAAAA-TTTGTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
CT0065614      --> AAAAAAATTTGTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
ET0136027      --> .attaaaaaTGTATAATTGAGATTGTATTGTATGCAATTCCTGGAGTCAT
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               551    -    601
RU05295        --> CATCATCGGCGACAACAAATGTCT-C-AAGAAAAGAA-CAAAAAGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- CATCATCGGCGACAACAAATGTCT-C-AAaa...................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- ..................................................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> CATCATCGGCGACAAa..................................
CT0013278      --> CATCATCGGCGACAACAAATGTCT-C-AAGAAAAGAA-CAAAAAGAAGAG
CT0005559      --> ..................................................
CT0065710      --> CATCATCGGCGACAACAAATGTCTACAAAGAAAAGAAACAAAAAGAAGAG
CT0065614      --> CATCATCGGCGACAACAAATGTCcc.........................
ET0136027      --> CATCATCGGCGGCAACAAATGTCT-C-AAGAAAAGAA-CAAAAAGAAGAG
ET0060040      --> ..................................................
CT0122224      --> ..................................................

               601    -    651
RU05295        --> GGT-GAAAGCATAGACATGAATATCACTATAGATTGAGAGAGGTAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................  Control
CT0017316      <-- ..................................................  Control
CT0033518      <-- ........................................AGGTAAGATG  Control
CT0068168      <-- .........................................GGTAAGATG  Control
ET0017377      <-- ..................................................  Ethylene
CT0087001      <-- ..................................................  Control
CT0009871      <-- ..................................................  Control
ET0001134      <-- ..................................................  Ethylene
CT0091491      <-- ..................................................  Control
CT0118481      <-- ..................................................  Control
CT0039754      <-- ..................................................  Control
CT0112488      --> ..................................................  Control
ET0147700      --> ..................................................  Ethylene
CT0062334      --> ..................................................  Control
ET0090300      --> ..................................................  Ethylene
ET0060773      --> ..................................................  Ethylene
CT0013278      --> GTT-GAAAGCATA.....................................  Control
CT0005559      --> ..................................................  Control
CT0065710      --> GGTAGAAAGCATAGACAT................................  Control
CT0065614      --> ..................................................  Control
ET0136027      --> GGT-GAAAGCATAGACATGAATATCACTATAGATTGAGAGAGGTAAGAGG  Ethylene
ET0060040      --> ...........................................TAAGAGG  Ethylene
CT0122224      --> ..................................................  Control

               651    -    701
RU05295        --> AGAAAGTCTCTCCCATATTTATTTGAATTGTTATGGATATTTGGGGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- AGAAAGTCTCTCCCATATTTATTTGAATTGTTATGGATATTTGGGGTTGT
CT0068168      <-- AGAAAGTCTCTCCCATATTTATTTGAATTGTTATGGATATTTGGGGTTGT
ET0017377      <-- .............................GTTATGGATATTTGGGGTTGT
CT0087001      <-- ......................................ATTTGGGGTTGT
CT0009871      <-- ........................................TTGGGGTTGT
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> AGAAAGTCTCTCCCATATTTATTTGAATTGTTATGGATATTTGGGGTTGT
ET0060040      --> AGAAAGTCTCTCCCATATTTATTTGAATTGTTATGGATATTTGGGGTTGT
CT0122224      --> ..........................................GGGGTTGT

               701    -    751
RU05295        --> GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- GAA-TAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
CT0068168      <-- GAA-TAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
ET0017377      <-- GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
CT0087001      <-- GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
CT0009871      <-- GAA-TAAAAATAGGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
ET0001134      <-- .....................................AATGTTGTATGTA
CT0091491      <-- .........................................gTGTATGTA
CT0118481      <-- ..................................................
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTA....
ET0060040      --> GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA
CT0122224      --> GAAATAAAAAT-GGCAGAGAAAGAGTAGGTTGCAGAGAATGTTGTATGTA

               751    -    801
RU05295        --> TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0068168      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
ET0017377      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0087001      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0009871      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
ET0001134      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0091491      <-- TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0118481      <-- ..........................ACACAGCAGTACCGCCTTCTGCTA
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA
CT0122224      --> TAGGGATGAATGAATTCAGGCTACAAACACAGCAGTACCGCCTTCTGCTA

               801    -    851
RU05295        --> GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0068168      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
ET0017377      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0087001      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0009871      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
ET0001134      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0091491      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0118481      <-- GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0039754      <-- ..........CTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTT-ATTGTTATTGTCTC
CT0122224      --> GCTGCTTCTGCTGCTGATTTGTGGTTTTAGGGTTTTATTGTTATTGTCTC

               851    -    901
RU05295        --> ATTTATATCATACTTTTGTTTCTTCTCGTTTCCAAATTCTATAGTATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- ATTTATATCATAC.....................................
CT0068168      <-- ATTTATATCATAC.....................................
ET0017377      <-- ATTTATATCATACTTTTGTTTCTTCTCGTTTCCAAATTCTATAGTATAAT
CT0087001      <-- ATTTATATCATAC.....................................
CT0009871      <-- ATTTATATCATAC.....................................
ET0001134      <-- ATTTATATCATAC.....................................
CT0091491      <-- ATTTATATCATAC.....................................
CT0118481      <-- ATTTATATCATACTTTTGTTTCTTCTCGTTTCCAAATTCTATAGTATAAT
CT0039754      <-- ATTTATATCATACTTTTGTTTCTTCTCGaaaaaaaa..............
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ATTTtatat.........................................
CT0122224      --> ATTTATATCATACTTTTGTTTCTTCTCGTTTCCAAATTCTATAGTATAAT

               901    -    951
RU05295        --> CATGAACACTTT-ACTTGTATTAAGTTTCAGAGTTCACATCATTCCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ..................................................
CT0017316      <-- ..................................................
CT0033518      <-- ..................................................
CT0068168      <-- ..................................................
ET0017377      <-- CATGAACACTTT-ACTTGTATT............................
CT0087001      <-- ..................................................
CT0009871      <-- ..................................................
ET0001134      <-- ..................................................
CT0091491      <-- ..................................................
CT0118481      <-- CATGAACACTTT-ACTTGTATTAAGTTTCAGAGTTCACATCATTCCAATT
CT0039754      <-- ..................................................
CT0112488      --> ..................................................
ET0147700      --> ..................................................
CT0062334      --> ..................................................
ET0090300      --> ..................................................
ET0060773      --> ..................................................
CT0013278      --> ..................................................
CT0005559      --> ..................................................
CT0065710      --> ..................................................
CT0065614      --> ..................................................
ET0136027      --> ..................................................
ET0060040      --> ..................................................
CT0122224      --> CATGAACACTTTTACTTGTATTAAGTTTCAGAGTTCA.............

               951    -   1001
RU05295        --> CCCTCTTAATGTTATAAGATTAAAATTGCATTTGTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057649      <-- ........................................
CT0017316      <-- ........................................
CT0033518      <-- ........................................
CT0068168      <-- ........................................
ET0017377      <-- ........................................
CT0087001      <-- ........................................
CT0009871      <-- ........................................
ET0001134      <-- ........................................
CT0091491      <-- ........................................
CT0118481      <-- CCCTCTTAATGTTATAAGATTAAAATTGCATTTGTCCATC
CT0039754      <-- ........................................
CT0112488      --> ........................................
ET0147700      --> ........................................
CT0062334      --> ........................................
ET0090300      --> ........................................
ET0060773      --> ........................................
CT0013278      --> ........................................
CT0005559      --> ........................................
CT0065710      --> ........................................
CT0065614      --> ........................................
ET0136027      --> ........................................
ET0060040      --> ........................................
CT0122224      --> ........................................