SNPs of unigene RU05375
               2      -     52
RU05375        --> ataAATCAAACTGCACTAG-TAGTACGTACGTAATATGGCATACCGGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ....ATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
CT0074964      <-- .......AAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
CT0081510      <-- ............aaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
CT0090938      <-- ............aaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
RH18Q12        <-- ............................ACGTAATATGGCATACCGGGTA
RH32AG171      <-- ............................ACGTAATATGGCATACCGGGTA
RH35AG171      <-- ............................ACGTAATATGGCATACCGGGTA
ET0098472      <-- ..........................................ACCGGGTA
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ...AATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0033543      --> ...AATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGG...
ET0048679      --> ...AATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0050769      --> ...AATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0086513      --> ...AATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0143708      --> ....ATCAAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0127606      --> .......AAACTAAACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0108029      --> aatacaaaactaaaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0118593      --> ...........taaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0120514      --> ...........taaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0120985      --> ...........taaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0126697      --> ...........taaACTAGCTAGTACGTACGTAATATGGCATACCGGGTA
ET0123821      --> .......................TACGTACGTAATATGGCATACCGGGTA
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               52     -    102
RU05375        --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
CT0074964      <-- --TTAACCGG-CAGGTGCAATTTT-CGGGAGGCAATGGGACTTGATGGAT
CT0081510      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
CT0090938      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
RH18Q12        <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
RH32AG171      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
RH35AG171      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0098472      <-- A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0033543      --> ..................................................
ET0048679      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0050769      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0086513      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0143708      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0127606      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0108029      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0118593      --> AATTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0120514      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0120985      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0126697      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0123821      --> A-TTAACCGG-CAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
ET0104430      --> ...aAACCGGACAGGTGCAATTTTTCGGGAGGCAATGGGACTTGATGGAT
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               102    -    152
RU05375        --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATcaagcagaat.......
CT0074964      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
CT0081510      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
CT0090938      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
RH18Q12        <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
RH32AG171      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
RH35AG171      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0098472      <-- TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0033543      --> ..................................................
ET0048679      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0050769      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0086513      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0143708      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0127606      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0108029      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0118593      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0120514      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0120985      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0126697      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0123821      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
ET0104430      --> TTATACTGGCTTACTATCATTTTGAGCGGCCATTGCCTGTGTGTTTTAGC
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               152    -    202
RU05375        --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ACCA..............................................
CT0081510      <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTG...............
CT0090938      <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTG...............
RH18Q12        <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
RH32AG171      <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
RH35AG171      <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0098472      <-- ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0033543      --> ..................................................
ET0048679      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0050769      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0086513      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0143708      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0127606      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0108029      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0118593      --> ACCATTTCAGTTCACTTGGGGCGCACTTTTGGGTGGCAATATCACTGTAT
ET0120514      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0120985      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0126697      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0123821      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
ET0104430      --> ACCATTTCAGTTCACTTGGGGCGCACTTT-GGGTGGCAATATCACTGTAT
CT0056772      --> .........................................TCACTGTAT
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               202    -    252
RU05375        --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................  Control
CT0074964      <-- ..................................................  Control
CT0081510      <-- ..................................................  Control
CT0090938      <-- ..................................................  Control
RH18Q12        <-- TTTGTGTCGGGTATGAG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  WaterDS
RH32AG171      <-- TTTGTGTCGGGTATGAG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  WaterDS
RH35AG171      <-- TTTGTGTCGGGTATGAG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  WaterDS
ET0098472      <-- TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
CT0055193      <-- ...............................TTCCATCGGAACCTTGCCC  Control
CT0046893      <-- ..................................................  Control
ET0072732      <-- ..................................................  Ethylene
CT0027349      <-- ..................................................  Control
CT0128780      <-- ..................................................  Control
ET0037156      <-- ..................................................  Ethylene
CT0132368      <-- ..................................................  Control
ET0025435      <-- ..................................................  Ethylene
CT0127619      <-- ..................................................  Control
ET0082249      <-- ..................................................  Ethylene
CT0120272      <-- ..................................................  Control
CT0123333      <-- ..................................................  Control
CT0069709      <-- ..................................................  Control
CT0017599      <-- ..................................................  Control
CT0038182      <-- ..................................................  Control
CT0058163      <-- ..................................................  Control
ET0006945      <-- ..................................................  Ethylene
CT0102176      <-- ..................................................  Control
CT0080817      <-- ..................................................  Control
CT0056918      <-- ..................................................  Control
CT0059921      <-- ..................................................  Control
CT0075029      <-- ..................................................  Control
CT0101606      <-- ..................................................  Control
ET0142430      <-- ..................................................  Ethylene
CT0057362      <-- ..................................................  Control
ET0142388      <-- ..................................................  Ethylene
ET0017991      <-- ..................................................  Ethylene
CT0133089      <-- ..................................................  Control
CT0140303      <-- ..................................................  Control
CT0134450      <-- ..................................................  Control
CT0037300      <-- ..................................................  Control
CT0069616      <-- ..................................................  Control
CT0127073      <-- ..................................................  Control
CT0015817      --> TTTGTGTCGGGTAT....................................  Control
ET0033543      --> ..................................................  Ethylene
ET0048679      --> TTTGTGTCGGGTATGGGGTGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0050769      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0086513      --> TTTG..............................................  Ethylene
ET0143708      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0127606      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0108029      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0118593      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0120514      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0120985      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0126697      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0123821      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0104430      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Ethylene
CT0056772      --> TTTGTGTCGGGTATGGG-TGTAACTATCTCTTTCCATCGGAACCTTGCCC  Control
ET0000638      --> ...........................CTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0000911      --> ...........................CTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0002982      --> ...........................CTCTTTCCATCGGAACCTTGCCC  Ethylene
ET0135335      --> .........................................attagaccc  Ethylene
CT0063794      --> ..................................................  Control
ET0004355      --> ..................................................  Ethylene
CT0108480      --> ..................................................  Control
RH55CA83       --> ..................................................  WaterDS
CT0029801      --> ..................................................  Control
CT0108848      --> ..................................................  Control
ET0084313      --> ..................................................  Ethylene
ET0004898      --> ..................................................  Ethylene
CT0026377      --> ..................................................  Control
ET0112749      --> ..................................................  Ethylene
ET0133779      --> ..................................................  Ethylene
ET0136697      --> ..................................................  Ethylene
ET0139808      --> ..................................................  Ethylene
CT0009069      --> ..................................................  Control
CT0080356      --> ..................................................  Control
CT0020528      --> ..................................................  Control
CT0137590      --> ..................................................  Control
ET0052048      --> ..................................................  Ethylene
CT0039876      --> ..................................................  Control
CT0049247      --> ..................................................  Control
CT0089904      --> ..................................................  Control
ET0069779      --> ..................................................  Ethylene
ET0097400      --> ..................................................  Ethylene
ET0113558      --> ..................................................  Ethylene
CT0088072      --> ..................................................  Control
CT0049425      --> ..................................................  Control
ET0109314      --> ..................................................  Ethylene
CT0038755      --> ..................................................  Control
ET0087938      --> ..................................................  Ethylene
CT0036850      --> ..................................................  Control
ET0032696      --> ..................................................  Ethylene
CT0118490      --> ..................................................  Control
CT0126833      --> ..................................................  Control
ET0111923      --> ..................................................  Ethylene
ET0137489      --> ..................................................  Ethylene
ET0138767      --> ..................................................  Ethylene
ET0140447      --> ..................................................  Ethylene
ET0137417      --> ..................................................  Ethylene
ET0136689      --> ..................................................  Ethylene
CT0027067      --> ..................................................  Control
CT0002034      --> ..................................................  Control
CT0015893      --> ..................................................  Control
CT0069095      --> ..................................................  Control
CT0078163      --> ..................................................  Control
CT0009689      --> ..................................................  Control
CT0099588      --> ..................................................  Control
ET0010963      --> ..................................................  Ethylene
CT0038884      --> ..................................................  Control
ET0110543      --> ..................................................  Ethylene
ET0113039      --> ..................................................  Ethylene
CT0056809      --> ..................................................  Control
CT0127266      --> ..................................................  Control
ET0058574      --> ..................................................  Ethylene
ET0087742      --> ..................................................  Ethylene
CT0071960      --> ..................................................  Control
CT0024321      --> ..................................................  Control

               252    -    302
RU05375        --> -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGT..............
RH32AG171      <-- -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGT..............
RH35AG171      <-- -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGT..............
ET0098472      <-- -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
CT0055193      <-- -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> -ACCGG-AGCTTTAAGGTTCCC-AA.........................
ET0050769      --> -ACCGGGAGCTTTAAGGTTCCC-AAAT.......................
ET0086513      --> ..................................................
ET0143708      --> CACCGG-AGCTTT.....................................
ET0127606      --> -ACCGG-AGCTTTAAGGTTCCC-AAA........................
ET0108029      --> -ACCGG-AGCTTTAAGGTTCCC-AAA........................
ET0118593      --> -ACCGG-AGCcttttaagg...............................
ET0120514      --> -ACCGG-AGCTTTAAGGTTCCC-AAATG......................
ET0120985      --> -ACCGG-AGCTTTAAGGTTCCC-AAATGG.....................
ET0126697      --> -ACCGG-AGCTTTAAGGT................................
ET0123821      --> -ACCGG-AGCTTTAAGGT................................
ET0104430      --> -ACCGG-AGCTTTAAGGTTCCCCAAATGGCTTGAGTACTCTCTTGCTTAT
CT0056772      --> -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
ET0000638      --> -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
ET0000911      --> -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
ET0002982      --> -ACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
ET0135335      --> aACCGG-AGCTTTAAGGTTCCC-AAATGGCTTGAGTACTCTCTTGCTTAT
CT0063794      --> ........................AATGGCTTGAGTACTCTCTTGCTTAT
ET0004355      --> ............................GCTTGAGTACTCTCTTGCTTAT
CT0108480      --> ..................................GTACTCTCTTGCTTAT
RH55CA83       --> .....................................CTCTCTTGCTTAT
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               302    -    352
RU05375        --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- TGTGCAGTT.........................................
CT0055193      <-- TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
CT0046893      <-- ........................AGTCCACTTGAATGGGTGAGCAGCCA
ET0072732      <-- ................................................CA
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> TGTGCAGTTCTG......................................
CT0056772      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
ET0000638      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
ET0000911      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
ET0002982      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
ET0135335      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
CT0063794      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
ET0004355      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
CT0108480      --> TGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
RH55CA83       --> TATGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
CT0029801      --> ................TTCAGGGAAGTCCACTTGAATGGGTGAGCAGCCA
CT0108848      --> .................................GAATGGGTGAGCAGCCA
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               352    -    402
RU05375        --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
CT0046893      <-- TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
ET0072732      <-- TAGATACCACCATCAATTTACAGAAAAAATTGAGAGACCCTCATAGCCCC
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> TAGAT.............................................
ET0000638      --> TAGATACCACCAT.....................................
ET0000911      --> TAGATACCACCAT.....................................
ET0002982      --> TAGATACCACCAT.....................................
ET0135335      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
CT0063794      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
ET0004355      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
CT0108480      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
RH55CA83       --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
CT0029801      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
CT0108848      --> TAGATACCACCATCAATTTACAGAAAAA-TTGAGAGACCCTCATAGCCCC
ET0084313      --> .......................................CTCATAGCCCC
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               402    -    452
RU05375        --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0046893      <-- -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
ET0072732      <-- -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0027349      <-- .................TTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0128780      <-- ..................TT-AG-TCACGTGAATTGGCTGTTCGATTATC
ET0037156      <-- ..................TT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0132368      <-- ........................TCACGTGAATTGGCTGTTCGATTATC
ET0025435      <-- ..........................ACGTGAATTGGCTGTTCGATTATC
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0063794      --> CAATAAGGGAGTTTTGGTTTTAGTTCACGTGA..................
ET0004355      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAAT................
CT0108480      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
RH55CA83       --> -GATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0029801      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
CT0108848      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
ET0084313      --> -AATAAGGGA-TTTTGGTTT-AG-TCACGTGAATTGGCTGTTCGATTATC
ET0004898      --> ...............................................ATC
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               452    -    502
RU05375        --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ATTCTCGGTTTGGAAGCTATGACGGACAAaccaaggaaaaggggaagaaa
CT0046893      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0072732      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0027349      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0128780      <-- ATTCTCGGTTTGGAAGCTATGACGGACGACTGATGAAGAATGTGGGAGAT
ET0037156      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0132368      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0025435      <-- ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0127619      <-- ..TCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0082249      <-- ........TTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0120272      <-- .....................ACGGACAACTGATGAAGAATGTGGGAGAT
CT0123333      <-- .....................ACGGACAACTGATGAAGAATGTGGGAGAT
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAG..
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATG........
RH55CA83       --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0029801      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0108848      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0084313      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0004898      --> ATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
CT0026377      --> .....CGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGAT
ET0112749      --> ...........................AACTGATGAAGAATGTGGGAGAT
ET0133779      --> ................................ATGAAGAATGTGGGAGAT
ET0136697      --> ...............................atTGAAGAATGTGGGAGAT
ET0139808      --> ..........................aatagaaagaaatagtaGGGAGAT
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               502    -    552
RU05375        --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ac................................................
CT0046893      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0072732      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0027349      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATAC....
CT0128780      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0037156      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0132368      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0025435      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0127619      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0082249      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0120272      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0123333      <-- TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0069709      <-- ............CAACTATACTATAGGTTTCTTTCATTATACATACTTCT
CT0017599      <-- .............AACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0038182      <-- ..................TACTATAGGTTTCTT-CATTATACATACTTCT
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0029801      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0108848      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0084313      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT.................
ET0004898      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0026377      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0112749      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0133779      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0136697      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
ET0139808      --> TTAGGAAATGACCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0009069      --> TT-GG-AATG-CCAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0080356      --> ............CAACTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0020528      --> ...............CTATACTATAGGTTTCTT-CATTATACATACTTCT
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               552    -    602
RU05375        --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- TTCATTCATTT-CTTCTTGGAGT...........................
ET0072732      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0027349      <-- ..................................................
CT0128780      <-- TTCATTCATTT-CTTCTTGGAGTTGCA.......................
ET0037156      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0132368      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0025435      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG.........
CT0127619      <-- TTCATTCATTTTCTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATTTA
ET0082249      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0120272      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0123333      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0069709      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0017599      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0038182      <-- TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0058163      <-- ..........T-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0006945      <-- ...............CTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0029801      --> TTCATTCATTT-CT....................................
CT0108848      --> ct................................................
ET0084313      --> ..................................................
ET0004898      --> TTCATTCATTT-CTTCTTGGAGTTGCA.......................
CT0026377      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0112749      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0133779      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0136697      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0139808      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0009069      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0080356      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0020528      --> TTCATTCATTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
CT0137590      --> ........TTT-CTTCTTGGAGTTGCACTCTATGCGGCCGG-AGGATT-A
ET0052048      --> ...............................ATGCGGCCGGGAGGATT-A
CT0039876      --> .....................................CCGG-AGGATT-A
CT0049247      --> .....................................CCGG-AGGATT-A
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               602    -    652
RU05375        --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- CCTTTT-GTGGTTT....................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0132368      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGG...............
ET0025435      <-- ..................................................
CT0127619      <-- CCTTTTTGTGGTTT....................................
ET0082249      <-- CCTTTT-GTGGTTTGGGGAATGGGT.........................
CT0120272      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0123333      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0069709      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0017599      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0038182      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0058163      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
ET0006945      <-- CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
ET0112749      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCAT............
ET0133779      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
ET0136697      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
ET0139808      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0009069      --> CCTTTT-GTGGTTTGGGGAATGGG..........................
CT0080356      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0020528      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0137590      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
ET0052048      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0039876      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0049247      --> CCTTTT-GTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTCTTTTAG-AC
CT0089904      --> .....................................TTTTTTTTAG-AC
ET0069779      --> .......................................TCTTTTAG-AC
ET0097400      --> .........................................TTTTAGTAC
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               652    -    702
RU05375        --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- GTT-ACTTTTTCAGTAAATTCC............................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- GTT-ACTTTTTCAGTAAATT..............................
CT0123333      <-- GTT-ACTTTTTCAGTAAATT..............................
CT0069709      <-- GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0017599      <-- GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0038182      <-- GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0058163      <-- GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0006945      <-- GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> GTT-ACTTTTT.......................................
ET0112749      --> ..................................................
ET0133779      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0136697      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0139808      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0009069      --> ..................................................
CT0080356      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAA.......
CT0020528      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0137590      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0052048      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0039876      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0049247      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
CT0089904      --> GTT-ACGTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0069779      --> GTT-ACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0097400      --> GTTTACTTTTTCAGTAAATTCCATTTGCCACACTTGGGGAAAACAAATAT
ET0113558      --> .......................TTTGCCACACTTGGGGAAAACAAATAT
CT0088072      --> ..............................CACTTGGGGAAAACAAATAT
CT0049425      --> .....................................GGAAAACAAATAT
ET0109314      --> ................................................AT
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               702    -    752
RU05375        --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0017599      <-- GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGC.
CT0038182      <-- GGGATACT..........................................
CT0058163      <-- GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0006945      <-- GGGATACTGGTGATGCCTCTAAAAACA.......................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> GGGATACTGGTGATGCCTCTAAAAACA-CTGGTTGTTTGGATTGCTGGCA
ET0136697      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0139808      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0137590      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0052048      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0039876      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0049247      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0089904      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0069779      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0097400      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0113558      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0088072      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0049425      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0109314      --> GGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
CT0038755      --> ...ATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCA
ET0087938      --> ...........................................GCTGGCA
CT0036850      --> ...............................................gga
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               752    -    802
RU05375        --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- CTAGGAGAAGGTTGGCACAATAATCACCAT....................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACT.......
ET0006945      <-- ..................................................
CT0102176      <-- .....................AATCACCATGCTTTTGAGTACTCAGCTCG
CT0080817      <-- ..............................................CTCG
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGT..........
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTT..............
CT0137590      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0052048      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0039876      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0049247      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0089904      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0069779      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0097400      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0113558      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0088072      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0049425      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0109314      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0038755      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0087938      --> CTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCG
CT0036850      --> agaaaggttaggacaacaAATAATCACCATGCTTTTGAGTACTCAGCTCG
ET0032696      --> .......................TCACCATGCTTTTGAGTACTCAGCTCG
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               802    -    852
RU05375        --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0080817      <-- ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0056918      <-- .....cgTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA---AAA
CT0059921      <-- .....cgTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0075029      <-- ..................................................
CT0101606      <-- ..................................................
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0052048      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTT..................
CT0039876      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0049247      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0089904      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0069779      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0097400      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-TTAAA
ET0113558      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0088072      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0049425      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0109314      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0038755      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0087938      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0036850      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0032696      --> ACAGGGCTTGGAATGGTGGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0118490      --> .................GGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
CT0126833      --> .................GGCAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0111923      --> ...................CAAATTGATGTTTCTTGGTATGTGA-T-AAA
ET0137489      --> ...........................TGTTTCTTGGTATGTGA-T-AAA
ET0138767      --> ...........................TGTTTCTTGGTATGTGA-T-AAA
ET0140447      --> ...........................TGTTTCTTGGTATGTGA-T-AAA
ET0137417      --> ..........................tgtTTTCTTGGTATGTGA-T-AAA
ET0136689      --> ......................ttgttttctttggttatTGTGATT-AAA
CT0027067      --> ...........................................A-T-AAA
CT0002034      --> ..................................................
CT0015893      --> ..................................................
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               852    -    902
RU05375        --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAA.............
CT0080817      <-- GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0056918      <-- GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0059921      <-- GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0075029      <-- ......................................TACCAACTGAGA
CT0101606      <-- .................................................A
ET0142430      <-- ..................................................
CT0057362      <-- ..................................................
ET0142388      <-- ..................................................
ET0017991      <-- ..................................................
CT0133089      <-- ..................................................
CT0140303      <-- ..................................................
CT0134450      <-- ..................................................
CT0037300      <-- ..................................................
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACC........
ET0052048      --> ..................................................
CT0039876      --> GTTTTTTCAAGTT.....................................
CT0049247      --> GTTTTTTCAAGTT.....................................
CT0089904      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAA......
ET0069779      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAA......
ET0097400      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAA.............
ET0113558      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0088072      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGT.................
CT0049425      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0109314      --> GTTTTTTCAAGTTCTGAATCTAGCAACA......................
CT0038755      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0087938      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0036850      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0032696      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0118490      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0126833      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0111923      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0137489      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0138767      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0140447      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0137417      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
ET0136689      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0027067      --> GTTTTTTCAAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0002034      --> ........AAGTTCTGAATCTAGCAACAGACGTGAAACTACCAACTGAGA
CT0015893      --> ..............................CGTGAAACTACCAACTGAGA
CT0069095      --> ..................................................
CT0078163      --> ..................................................
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               902    -    952
RU05375        --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCT........
CT0056918      <-- TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0059921      <-- TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTTTGATCCTGGAGGATA
CT0075029      <-- TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0101606      <-- TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0142430      <-- .CCAGAAGAGACAAAAAAGCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0057362      <-- .....AAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0142388      <-- .....AAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0017991      <-- ......AGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0133089      <-- ...........CAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0140303      <-- ............AAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0134450      <-- ...................CTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0037300      <-- .......................AGCAACGAAGTT-GATCCTGGAGGATA
CT0069616      <-- ..................................................
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> TCCAGAAGAGACAAAAA-GCT.............................
CT0088072      --> ..................................................
CT0049425      --> T.................................................
ET0109314      --> ..................................................
CT0038755      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GAT...........
ET0087938      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGA.....
CT0036850      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0032696      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0118490      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0126833      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0111923      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0137489      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0138767      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0140447      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0137417      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
ET0136689      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0027067      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0002034      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0015893      --> TCCAGAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0069095      --> .cagaAAGAGACAAAAA-GCTCTAGCAACGAAGTT-GATCCTGGAGGATA
CT0078163      --> ........................GCAACGAAGTT-GATCCTGGAGGATA
CT0009689      --> ..................................................
CT0099588      --> ..................................................
ET0010963      --> ..................................................
CT0038884      --> ..................................................
ET0110543      --> ..................................................
ET0113039      --> ..................................................
CT0056809      --> ..................................................
CT0127266      --> ..................................................
ET0058574      --> ..................................................
ET0087742      --> ..................................................
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               952    -   1002
RU05375        --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0059921      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0075029      <-- AAGTAAATTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0101606      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0142430      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0057362      <-- AAGTAA-TTTTGACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0142388      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0017991      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0133089      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0140303      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0134450      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0037300      <-- AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0069616      <-- .....................CCATATATAGTATTCTTCCAGCTACATGC
CT0127073      <-- ..................................................
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACA...
ET0032696      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0118490      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0126833      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0111923      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0137489      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0138767      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0140447      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0137417      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0136689      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0027067      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0002034      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0015893      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0069095      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0078163      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0009689      --> AAGTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
CT0099588      --> ..GTAA-TTT-GACCAATTATCCATATATAGTATTCTTCCAGCTACATGC
ET0010963      --> ..................TATCCATATATAGTATTCTTCCAGCTACATGC
CT0038884      --> ......................CATATATAGTATTCTTCCAGCTACATGC
ET0110543      --> ..............................GTATTCTTCCAGCTACATGC
ET0113039      --> ..............................GTATTCTTCCAGCTACATGC
CT0056809      --> .....................................TCCAGCTACATGC
CT0127266      --> ................................................GC
ET0058574      --> ................................................GC
ET0087742      --> ................................................GC
CT0071960      --> ..................................................
CT0024321      --> ..................................................

               1002   -   1052
RU05375        --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0059921      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0075029      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0101606      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0142430      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0057362      <-- TGGACCAGTAGCACCAACTTTTTCCTCATGTGGTTGGGAATAAA-CAAGC
ET0142388      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0017991      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0133089      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0140303      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0134450      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAAACAAGC
CT0037300      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0069616      <-- TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0127073      <-- ................................................GC
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> TGGACCAGTAGCA.....................................
CT0118490      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0126833      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0111923      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0137489      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0138767      --> TGGACCAGTAGCACCAACTTTT-CC-CATGTGGTTGGGAATAAA-CAAGC
ET0140447      --> TGGACCAGTAGCACCAACTTTT-CC-CATGTGGTTGG-AATAAA-CA-GC
ET0137417      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0136689      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0027067      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGA...........
CT0002034      --> TGGACCAGTAGCACCAACTTTT-C..........................
CT0015893      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0069095      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0078163      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0009689      --> TGGACCAGTAGCACCAACTTTTTCCTCATGTGGTTGGGAATAAA-CAAGC
CT0099588      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0010963      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0038884      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0110543      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0113039      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0056809      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0127266      --> TGGACCAG-AGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0058574      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
ET0087742      --> TGGACCAGTAGCACCAACTTTT-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0071960      --> .....................T-CCTCATGTGGTTGGGAATAAA-CAAGC
CT0024321      --> ..................................................

               1052   -   1102
RU05375        --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ATTTG.............................................
CT0059921      <-- ..................................................
CT0075029      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0101606      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0142430      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0057362      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0142388      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0017991      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAA.......
CT0133089      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0140303      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0134450      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0037300      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0069616      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0127073      <-- ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ATTTGAAATATGTATGAA................................
CT0126833      --> ATTTGAAATATGTATGAA................................
ET0111923      --> ATTTGAAATATGTATGAATA..............................
ET0137489      --> ATTTGAAATATGT.....................................
ET0138767      --> ATTTGAAATATGTATGAATAATGA..........................
ET0140447      --> ATTTGAAAT.........................................
ET0137417      --> ATTTGAAATATGTATGAATAATGAT.........................
ET0136689      --> ATTTGAAATATGTATGAATAATG...........................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0069095      --> ATTTGAAATATGTATGAATAATGATAACTTGATA................
CT0078163      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0009689      --> ATTTG.............................................
CT0099588      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0010963      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0038884      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0110543      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0113039      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0056809      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0127266      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0058574      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
ET0087742      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0071960      --> ATTTGAAATATGTATGAATAATGATAACTTGATATGTATCTAACCGCGAA
CT0024321      --> .........................tACTTGATATGTATCTAACCGCGAA

               1102   -   1152
RU05375        --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ..................................................
CT0074964      <-- ..................................................
CT0081510      <-- ..................................................
CT0090938      <-- ..................................................
RH18Q12        <-- ..................................................
RH32AG171      <-- ..................................................
RH35AG171      <-- ..................................................
ET0098472      <-- ..................................................
CT0055193      <-- ..................................................
CT0046893      <-- ..................................................
ET0072732      <-- ..................................................
CT0027349      <-- ..................................................
CT0128780      <-- ..................................................
ET0037156      <-- ..................................................
CT0132368      <-- ..................................................
ET0025435      <-- ..................................................
CT0127619      <-- ..................................................
ET0082249      <-- ..................................................
CT0120272      <-- ..................................................
CT0123333      <-- ..................................................
CT0069709      <-- ..................................................
CT0017599      <-- ..................................................
CT0038182      <-- ..................................................
CT0058163      <-- ..................................................
ET0006945      <-- ..................................................
CT0102176      <-- ..................................................
CT0080817      <-- ..................................................
CT0056918      <-- ..................................................
CT0059921      <-- ..................................................
CT0075029      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAAaaaaaa..........
CT0101606      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGAC...........
ET0142430      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0057362      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
ET0142388      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
ET0017991      <-- ..................................................
CT0133089      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAAaaaaa...........
CT0140303      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGT...................
CT0134450      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAAaaaaa...........
CT0037300      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0069616      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0127073      <-- TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGA............
CT0015817      --> ..................................................
ET0033543      --> ..................................................
ET0048679      --> ..................................................
ET0050769      --> ..................................................
ET0086513      --> ..................................................
ET0143708      --> ..................................................
ET0127606      --> ..................................................
ET0108029      --> ..................................................
ET0118593      --> ..................................................
ET0120514      --> ..................................................
ET0120985      --> ..................................................
ET0126697      --> ..................................................
ET0123821      --> ..................................................
ET0104430      --> ..................................................
CT0056772      --> ..................................................
ET0000638      --> ..................................................
ET0000911      --> ..................................................
ET0002982      --> ..................................................
ET0135335      --> ..................................................
CT0063794      --> ..................................................
ET0004355      --> ..................................................
CT0108480      --> ..................................................
RH55CA83       --> ..................................................
CT0029801      --> ..................................................
CT0108848      --> ..................................................
ET0084313      --> ..................................................
ET0004898      --> ..................................................
CT0026377      --> ..................................................
ET0112749      --> ..................................................
ET0133779      --> ..................................................
ET0136697      --> ..................................................
ET0139808      --> ..................................................
CT0009069      --> ..................................................
CT0080356      --> ..................................................
CT0020528      --> ..................................................
CT0137590      --> ..................................................
ET0052048      --> ..................................................
CT0039876      --> ..................................................
CT0049247      --> ..................................................
CT0089904      --> ..................................................
ET0069779      --> ..................................................
ET0097400      --> ..................................................
ET0113558      --> ..................................................
CT0088072      --> ..................................................
CT0049425      --> ..................................................
ET0109314      --> ..................................................
CT0038755      --> ..................................................
ET0087938      --> ..................................................
CT0036850      --> ..................................................
ET0032696      --> ..................................................
CT0118490      --> ..................................................
CT0126833      --> ..................................................
ET0111923      --> ..................................................
ET0137489      --> ..................................................
ET0138767      --> ..................................................
ET0140447      --> ..................................................
ET0137417      --> ..................................................
ET0136689      --> ..................................................
CT0027067      --> ..................................................
CT0002034      --> ..................................................
CT0015893      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAA................
CT0069095      --> ..................................................
CT0078163      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTT.
CT0009689      --> ..................................................
CT0099588      --> TTCTACCTCCTTCgaa..................................
ET0010963      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAAAATTTT
CT0038884      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
ET0110543      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAAATTTTT
ET0113039      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAAATTTTT
CT0056809      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0127266      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAAAATTTT
ET0058574      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGATTTTTTa
ET0087742      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0071960      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAATTTTTT
CT0024321      --> TTCTACCTCCTTCAAATCGCGGTAAAGTGGTAAATGGACCTGAAATTTTT

               1152   -   1202
RU05375        --> TATACCGCAAAAAAAAAttgtttcacc
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0031774      <-- ...........................
CT0074964      <-- ...........................
CT0081510      <-- ...........................
CT0090938      <-- ...........................
RH18Q12        <-- ...........................
RH32AG171      <-- ...........................
RH35AG171      <-- ...........................
ET0098472      <-- ...........................
CT0055193      <-- ...........................
CT0046893      <-- ...........................
ET0072732      <-- ...........................
CT0027349      <-- ...........................
CT0128780      <-- ...........................
ET0037156      <-- ...........................
CT0132368      <-- ...........................
ET0025435      <-- ...........................
CT0127619      <-- ...........................
ET0082249      <-- ...........................
CT0120272      <-- ...........................
CT0123333      <-- ...........................
CT0069709      <-- ...........................
CT0017599      <-- ...........................
CT0038182      <-- ...........................
CT0058163      <-- ...........................
ET0006945      <-- ...........................
CT0102176      <-- ...........................
CT0080817      <-- ...........................
CT0056918      <-- ...........................
CT0059921      <-- ...........................
CT0075029      <-- ...........................
CT0101606      <-- ...........................
ET0142430      <-- T..........................
CT0057362      <-- -ATACCGC...................
ET0142388      <-- TATACCGC...................
ET0017991      <-- ...........................
CT0133089      <-- ...........................
CT0140303      <-- ...........................
CT0134450      <-- ...........................
CT0037300      <-- -ATACCGCAcctttttattgtttcacc
CT0069616      <-- TATACCGC...................
CT0127073      <-- ...........................
CT0015817      --> ...........................
ET0033543      --> ...........................
ET0048679      --> ...........................
ET0050769      --> ...........................
ET0086513      --> ...........................
ET0143708      --> ...........................
ET0127606      --> ...........................
ET0108029      --> ...........................
ET0118593      --> ...........................
ET0120514      --> ...........................
ET0120985      --> ...........................
ET0126697      --> ...........................
ET0123821      --> ...........................
ET0104430      --> ...........................
CT0056772      --> ...........................
ET0000638      --> ...........................
ET0000911      --> ...........................
ET0002982      --> ...........................
ET0135335      --> ...........................
CT0063794      --> ...........................
ET0004355      --> ...........................
CT0108480      --> ...........................
RH55CA83       --> ...........................
CT0029801      --> ...........................
CT0108848      --> ...........................
ET0084313      --> ...........................
ET0004898      --> ...........................
CT0026377      --> ...........................
ET0112749      --> ...........................
ET0133779      --> ...........................
ET0136697      --> ...........................
ET0139808      --> ...........................
CT0009069      --> ...........................
CT0080356      --> ...........................
CT0020528      --> ...........................
CT0137590      --> ...........................
ET0052048      --> ...........................
CT0039876      --> ...........................
CT0049247      --> ...........................
CT0089904      --> ...........................
ET0069779      --> ...........................
ET0097400      --> ...........................
ET0113558      --> ...........................
CT0088072      --> ...........................
CT0049425      --> ...........................
ET0109314      --> ...........................
CT0038755      --> ...........................
ET0087938      --> ...........................
CT0036850      --> ...........................
ET0032696      --> ...........................
CT0118490      --> ...........................
CT0126833      --> ...........................
ET0111923      --> ...........................
ET0137489      --> ...........................
ET0138767      --> ...........................
ET0140447      --> ...........................
ET0137417      --> ...........................
ET0136689      --> ...........................
CT0027067      --> ...........................
CT0002034      --> ...........................
CT0015893      --> ...........................
CT0069095      --> ...........................
CT0078163      --> ...........................
CT0009689      --> ...........................
CT0099588      --> ...........................
ET0010963      --> Tttt.......................
CT0038884      --> TATACCGCAAAAAAAAA..........
ET0110543      --> Ttt........................
ET0113039      --> Ttt........................
CT0056809      --> TATACCGCAAAAAAAA...........
CT0127266      --> Ttt........................
ET0058574      --> tac........................
ET0087742      --> TATACCGC...................
CT0071960      --> TAaccgac...................
CT0024321      --> Tt.........................