SNPs of unigene RU05403
               1      -     51
RU05403        --> TAAACTAAAAGTCTATTTCGTTTGTAAGTCTTCTTTCAAAT-ATCTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> TAAACTAAAAGTCTATTTCGTTTGTAAGTCTTCTTTCAAATTATCTCTCT
ET0041801      --> ...........aacaaaagcattcgttgaagctcTTCAAAT-ATCTCTCT
RH47BO51       --> ......ggcaaaacaaaagcattcgttgaagctcTTCAAAT-ATCTCTCT
ET0130751      --> ..........................tgaagctccTCAAAT-ATCTCTCT
ET0132280      --> ..........................tgaagctccTCAAAT-ATCTCTCT
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               51     -    101
RU05403        --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................CTTTGTGAAAACCCTCACAGGCAAGACTATTA
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
ET0041801      --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
RH47BO51       --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
ET0130751      --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
ET0132280      --> CGCTCTCAAGATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATTA
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               101    -    151
RU05403        --> CCCTCGAGGTTGAAAGCTCTGACACCATCGACAATGTCAAAGCGAAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- CCCTCGAGGTTGAAAGCTCCGACACCATCGACAATGTCAAAGCGAAGATC
ET0029637      <-- ...............................CAATGTCAAAGCGAAGATC
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> CCCTCGAGGTTGAAAGCTCTGACACCATCGACAATGTCAAAGCGAAGATC
ET0041801      --> CCCTCGAGGTTGAAAGCTCTGACACCATCGACAATGTCAAAGCGAAGATC
RH47BO51       --> CCCTCGAGGTTGAAAGCTCTGACACCATCGACAATGTCAAAGCGAAGATC
ET0130751      --> CCCTCGAGGTTGAAAGCTCCGACACCATCGACAATGTCAAAGCGAAGATC
ET0132280      --> CCCTCGAGGTTGAAAGCTCCGACACCATCGACAATGTCAAAGCGAAGATC
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               151    -    201
RU05403        --> CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
ET0029637      <-- CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> CAAGACAAGGAGGGAA..................................
ET0041801      --> CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
RH47BO51       --> CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
ET0130751      --> CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
ET0132280      --> CAAGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGG
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               201    -    251
RU05403        --> CAAGTAGCTTGAGGACGGCCGGACACTTGCTGATTATAACATTCAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- CAAGCAGCTTGAGGACGGCCGGACACTTGCTGATTATAACATTCAGAAGG
ET0029637      <-- CAAGCAGCTTGAGGACGGCCGGACACTTGCTGATTATAACATTCAGAAGG
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> CAAGCAGCTTGAGGACGGCCGGACACTTGCTGACTATAACta........
RH47BO51       --> CAAGTAGCTTGAGGACGGCCGGACACCTGCTGACTATAACATTCAGAAGG
ET0130751      --> CAAGCAGCTTGAGGACGGCCGGACACTTGCTGATTATAACATTCAGAAGG
ET0132280      --> CAAGCAGCTTGAGGACGGCCGGACACTTGCTGATTATAACATTCAGAAGG
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               251    -    301
RU05403        --> AGTCCACTCTCCACTTGGTGCTCAGACTCCGTGGTGGCATGCAGATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- AGTCCACTCTCCACTTGGTGCTCAGACTCCGTGGTGGCATGCAGATCT..
ET0029637      <-- AGTCCACTCTCCACTTGGTGCTCAGACTCCGTGGTGGCATGCAGATCTTT
CT0085468      <-- ......................CAGACTCCGTGGTGGCATGCAGATCTTT
CT0101390      <-- .........................ACTCCGAGGTGGCATGCAGATCTTT
CT0119337      <-- ..............................................CTTT
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> AGTCCACTCTCCACTTGGTGCTCAGACTCCGTGGTGGCATGCAGATCTTT
ET0130751      --> AGT...............................................
ET0132280      --> AGT...............................................
CT0039339      --> .......................................gtCAGATCTTT
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               301    -    351
RU05403        --> -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGA......
CT0085468      <-- -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
CT0101390      <-- -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
CT0119337      <-- -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> -GTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> TGTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTCGAGAGCTCTG
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               351    -    401
RU05403        --> ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCC
CT0101390      <-- ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCC
CT0119337      <-- ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCC
CT0022213      <-- ......................AAAGATCCAGGACAAGGAGGGTATCCCC
ET0072162      <-- .................................cgAAGGAGGGTATCCCC
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGGGGGTATCCCC
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTACTCCC
ET0026880      --> .................AAGGCAAAGATCCAGGACAAGGAGGGTATCCCC
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               401    -    451
RU05403        --> CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- CCAGATCAGCAGAGGCTCATCTTTGCCGG-CAAACcacaatcacagga..
CT0101390      <-- CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
CT0119337      <-- CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
CT0022213      <-- CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
ET0072162      <-- CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
CT0006323      <-- ...................................AGCTAGAGGATGGTC
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> CCAGATCAGCAGAGGCTCATCTTTGCTGGACAAACAGCTAGAGGATGGTC
ET0026880      --> CCAGATCAGCAGAGGCTCATCTTTGCTGG-CAAACAGCTAGAGGATGGTC
ET0138077      --> .................atctTTTGCTGG-CAAACAGCTAGAGGATGGTC
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               451    -    501
RU05403        --> GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCA.......
CT0119337      <-- GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
CT0022213      <-- GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
ET0072162      <-- GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
CT0006323      <-- GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
CT0128611      <-- .........CAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
CT0140331      <-- ..........AGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
RH23Z19        <-- .......................CAAAAGGAGTCCACCCTTCACTTGGTT
RH25AC175      <-- .......................CAAAAGGAGTCCACCCTTCACTTGGTT
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> GCACCCTTGCAGATTACAATATacc.........................
ET0026880      --> GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
ET0138077      --> GCACCCTTGCAGATTACAATATCCAAAAGGAGTCCACCCTTCACTTGGTT
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               501    -    551
RU05403        --> CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- CTCCGGCTGCGTGGTGGAATGCAAATC.......................
CT0022213      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
ET0072162      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
CT0006323      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
CT0128611      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
CT0140331      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
RH23Z19        <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
RH25AC175      <-- CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
ET0066737      <-- .............GTGGAATGCAAATCTTTGTTGAAGAACCCTTACTGGG
ET0067347      <-- ...........................................TACTGGG
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> CTCCGGCTGCGTG.....................................
ET0138077      --> CTCCGGCTGCGTGGTGGAATGCAAATCTTTGT-GAAGA-CCCTTACTGGG
ET0127054      --> ...............gtctaaattcttttgtT-GAAGA-CCCTTACTGGG
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               551    -    601
RU05403        --> AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
ET0072162      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
CT0006323      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
CT0128611      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
CT0140331      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
RH23Z19        <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
RH25AC175      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
ET0066737      <-- AAGACAATCACCTTCGGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
ET0067347      <-- AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGGCAATGTCA
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
ET0127054      --> AAGACAATCACCTT-GGAGGTGGAAAGCTCTGATACAATTGACAATGTCA
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               601    -    651
RU05403        --> AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- AGGCAAAag.........................................
ET0072162      <-- AGGCAAAAGAATCCAGGACAAAagaaaggactaat...............
CT0006323      <-- A.................................................
CT0128611      <-- AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
CT0140331      <-- AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
RH23Z19        <-- AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
RH25AC175      <-- AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
ET0066737      <-- AGGCAA--G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
ET0067347      <-- AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
CT0080906      <-- ............................................AGAGGC
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
ET0127054      --> AGGCAAA-G-ATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGC
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               651    -    701
RU05403        --> TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- TCATCTTT-G........................................
CT0140331      <-- TCATCTTT-G........................................
RH23Z19        <-- TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
RH25AC175      <-- TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
ET0066737      <-- TCATCTTTTGCAGGAAAGCAGCTTGAAGATGG..................
ET0067347      <-- TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
CT0080906      <-- TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
ET0062258      <-- .......................TGAAGATGGTAGGACACTGGCAGACTA
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTA
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> TCATCTTT-GCAagg...................................
ET0127054      --> TCATCTTT-GCAGGAAAGCAGCTTGAAGATGGTAGGA.............
CT0048962      --> ....................................ACACTGGCAGACTA
CT0085302      --> ......................................ACTGGCAGACTA
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               701    -    751
RU05403        --> CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
RH25AC175      <-- CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0066737      <-- ..................................................
ET0067347      <-- CAACATTCAG........................................
CT0080906      <-- CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0062258      <-- CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
CT0042855      <-- .................................................T
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
CT0085302      --> CAACATTCAGAAGGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0135785      --> ............GGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0139414      --> ............GGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0140054      --> ............GGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0140306      --> ............GGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0140313      --> ............GGAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0138874      --> ...........ggtAGTCGACTCTGCATTT-GGTGCTCCGTCTACGTGGT
ET0140734      --> .......ggtagttcgtacttctTGCATTTTGGTGCTCCGTCTACGTGGT
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               751    -    801
RU05403        --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
RH25AC175      <-- GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0062258      <-- GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0042855      <-- GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-G...............
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> GGGATGCAGATTTTT-GTGAAG-ACCCCTCACT-GGAAAGACCATAACCT
CT0085302      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0135785      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0139414      --> GGGATGCAGATTTTTTGTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0140054      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0140306      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0140313      --> GGGATGCAGATTTTTTGTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0138874      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0140734      --> GGGATGCAGATTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0093262      --> ...gcagtatTTTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0096067      --> ...........TTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0097464      --> ...........TTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0097515      --> ...........TTTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0092156      --> ............TTT-GTGAAGGACCC-TCACT-GGAAAGACCATAACCT
CT0095825      --> ............TTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0096066      --> ............TTT-GTGAAGGACCC-TCACTAGGAAAGACCATAACCT
CT0096249      --> ............TTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0096601      --> ............TTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0097491      --> ............TTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
CT0097667      --> ............TTT-GTGAAG-ACCCCTCACT-GGAAAGACCATAACCT
CT0097926      --> ............TTT-GTGAAG-ACCC-TCACT-GGAAAGACCATAACCT
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               801    -    851
RU05403        --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
RH25AC175      <-- TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGA..............
ET0062258      <-- TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0042855      <-- TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0085302      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0135785      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0139414      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0140054      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0140306      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0140313      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0138874      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0140734      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0093262      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0096067      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0097464      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0097515      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0092156      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0095825      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0096066      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0096249      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0096601      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0097491      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0097667      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
CT0097926      --> TGGAGGTAGAGAGTTCTGATACAATTGATAATGTGAAAGCAAAGATTCAG
ET0055315      --> .................................TGAAAGCAAAGATTCAG
ET0117684      --> ..................................................
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               851    -    901
RU05403        --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
RH25AC175      <-- GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- GA................................................
CT0042855      <-- GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0015268      <-- ..................................................
CT0089938      <-- ..................................................
ET0028640      <-- ..................................................
CT0037229      <-- ..................................................
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0085302      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0135785      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0139414      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0140054      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0140306      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0140313      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0138874      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0140734      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0093262      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0096067      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0097464      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0097515      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0092156      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0095825      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0096066      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0096249      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0096601      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0097491      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0097667      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0097926      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0055315      --> GACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
ET0117684      --> ...AAGGAGGGCATTCCTCCGGACCAGCAGAGGCTCATATTTGCTGGTAA
CT0031372      --> ..................................................
CT0044828      --> ..................................................
CT0049317      --> ..................................................
ET0093324      --> ..................................................
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               901    -    951
RU05403        --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................  Control
ET0029637      <-- ..................................................  Ethylene
CT0085468      <-- ..................................................  Control
CT0101390      <-- ..................................................  Control
CT0119337      <-- ..................................................  Control
CT0022213      <-- ..................................................  Control
ET0072162      <-- ..................................................  Ethylene
CT0006323      <-- ..................................................  Control
CT0128611      <-- ..................................................  Control
CT0140331      <-- ..................................................  Control
RH23Z19        <-- GCGGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  WaterDS
RH25AC175      <-- GCGGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  WaterDS
ET0066737      <-- ..................................................  Ethylene
ET0067347      <-- ..................................................  Ethylene
CT0080906      <-- ..................................................  Control
ET0062258      <-- ..................................................  Ethylene
CT0042855      <-- GCAGCTTGAAGAT.....................................  Control
CT0015268      <-- .....TTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0089938      <-- ...............................TTACAACATCCAGAAGGAG  Control
ET0028640      <-- ...............................TTACAACATCCAGAAGGAG  Ethylene
CT0037229      <-- ............................................AAGGAG  Control
CT0039144      <-- ..................................................  Control
CT0132611      <-- ..................................................  Control
CT0042204      --> ..................................................  Control
ET0041801      --> ..................................................  Ethylene
RH47BO51       --> ..................................................  WaterDS
ET0130751      --> ..................................................  Ethylene
ET0132280      --> ..................................................  Ethylene
CT0039339      --> ..................................................  Control
ET0026880      --> ..................................................  Ethylene
ET0138077      --> ..................................................  Ethylene
ET0127054      --> ..................................................  Ethylene
CT0048962      --> GCA...............................................  Control
CT0085302      --> GCAGCTTGAAGATGGG-AGGA.............................  Control
ET0135785      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0139414      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0140054      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0140306      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0140313      --> GCAGCTTGAAGATGGGGAGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0138874      --> GCAGCTTGAAGATGGG-AG...............................  Ethylene
ET0140734      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0093262      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
CT0096067      --> GCAGCTTGAAGATGGGGAGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0097464      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0097515      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0092156      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0095825      --> GCAGCTTGAAGATGGGGAGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0096066      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0096249      --> GCAGCTTGAAGATGGGGAGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0096601      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0097491      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0097667      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
CT0097926      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Control
ET0055315      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
ET0117684      --> GCAGCTTGAAGATGGG-AGGACTCTAGCGGATTACAACATCCAGAAGGAG  Ethylene
CT0031372      --> ..................................................  Control
CT0044828      --> ..................................................  Control
CT0049317      --> ..................................................  Control
ET0093324      --> ..................................................  Ethylene
CT0036180      --> ..................................................  Control
CT0022570      --> ..................................................  Control
CT0088442      --> ..................................................  Control
CT0064067      --> ..................................................  Control
CT0064957      --> ..................................................  Control

               951    -   1001
RU05403        --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
RH25AC175      <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0089938      <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
ET0028640      <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0037229      <-- TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGGGTTTCTTG-AATTT
CT0039144      <-- ..................................................
CT0132611      <-- ..................................................
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> TC................................................
ET0139414      --> TCG...............................................
ET0140054      --> TCG...............................................
ET0140306      --> TCG...............................................
ET0140313      --> T.................................................
ET0138874      --> ..................................................
ET0140734      --> TCG...............................................
ET0093262      --> TCGACTCTTCACCTTGTCCTGC-GCCTC......................
CT0096067      --> TCGACTCTTCACCTTGTCCTGCCGCCTCCGTGGTGG-TTTC.........
CT0097464      --> TCGACTCTTCACCTTGTCCTGC-GCCTC......................
CT0097515      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTG--TTTCT-G-AATTT
CT0092156      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0095825      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0096066      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTC.........
CT0096249      --> TCGACTCTTCACCTTGTCCTGCCGCCTCCGTGGTGG-TTTCT-GTAATTT
CT0096601      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGtttc...........
CT0097491      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0097667      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0097926      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
ET0055315      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
ET0117684      --> TCGACTCTTCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0031372      --> ........TCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0044828      --> ........TCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0049317      --> ........TCACCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
ET0093324      --> ...........CCTTGTCCTGC-GCCTCCGTGGTGG-TTTCT-G-AATTT
CT0036180      --> ..................................................
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               1001   -   1051
RU05403        --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
RH25AC175      <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTA...
CT0089938      <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
ET0028640      <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0037229      <-- CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0039144      <-- ...AATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0132611      <-- .............GTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> CTGA..............................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> CTGAA.............................................
ET0055315      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGA...........
ET0117684      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0031372      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0044828      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0049317      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
ET0093324      --> CTGAATGATCGTGGTGGTGCCATCCTGTCTGAGTAGTGAGCAGTCTACTG
CT0036180      --> .............................................TACTG
CT0022570      --> ..................................................
CT0088442      --> ..................................................
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               1051   -   1101
RU05403        --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- CTTTGATTATAGTTTTATTTGGTTATGT......................
RH25AC175      <-- CTTTGATTATAGTTTTATTTGGTTATGT......................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
ET0028640      <-- CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0037229      <-- CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0039144      <-- CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0132611      <-- CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> CTTTGATTATAGTTTTATTTGGTT..........................
CT0031372      --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0044828      --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0049317      --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
ET0093324      --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0036180      --> CTTTGATTATAGTTTTATTTGGTTATGTACTTGATATTCGTACTCTTTTA
CT0022570      --> .....................GTTATGTACTTGATATTCGTACTCTTTTA
CT0088442      --> ...............................tcgTATTCGTACTCTTTTA
CT0064067      --> ..................................................
CT0064957      --> ..................................................

               1101   -   1151
RU05403        --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ..................................................
ET0029637      <-- ..................................................
CT0085468      <-- ..................................................
CT0101390      <-- ..................................................
CT0119337      <-- ..................................................
CT0022213      <-- ..................................................
ET0072162      <-- ..................................................
CT0006323      <-- ..................................................
CT0128611      <-- ..................................................
CT0140331      <-- ..................................................
RH23Z19        <-- ..................................................
RH25AC175      <-- ..................................................
ET0066737      <-- ..................................................
ET0067347      <-- ..................................................
CT0080906      <-- ..................................................
ET0062258      <-- ..................................................
CT0042855      <-- ..................................................
CT0015268      <-- ..................................................
CT0089938      <-- AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
ET0028640      <-- AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0037229      <-- AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTTTCTCTATTTAGT
CT0039144      <-- AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0132611      <-- AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0042204      --> ..................................................
ET0041801      --> ..................................................
RH47BO51       --> ..................................................
ET0130751      --> ..................................................
ET0132280      --> ..................................................
CT0039339      --> ..................................................
ET0026880      --> ..................................................
ET0138077      --> ..................................................
ET0127054      --> ..................................................
CT0048962      --> ..................................................
CT0085302      --> ..................................................
ET0135785      --> ..................................................
ET0139414      --> ..................................................
ET0140054      --> ..................................................
ET0140306      --> ..................................................
ET0140313      --> ..................................................
ET0138874      --> ..................................................
ET0140734      --> ..................................................
ET0093262      --> ..................................................
CT0096067      --> ..................................................
CT0097464      --> ..................................................
CT0097515      --> ..................................................
CT0092156      --> ..................................................
CT0095825      --> ..................................................
CT0096066      --> ..................................................
CT0096249      --> ..................................................
CT0096601      --> ..................................................
CT0097491      --> ..................................................
CT0097667      --> ..................................................
CT0097926      --> ..................................................
ET0055315      --> ..................................................
ET0117684      --> ..................................................
CT0031372      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0044828      --> AAATGGCCAATGGATGGCTCATTCTTTTGACTTATTTT-CTCTATTTAGT
CT0049317      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
ET0093324      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0036180      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-Cctatc.....
CT0022570      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0088442      --> AAATGGCCAATGGATGGCTCAT-CTTTTGACT-ATTTT-CTCTATTTAGT
CT0064067      --> ..............................CT-ATTTT-CTCTATTTAGT
CT0064957      --> ..............................CT-ATTTT-CTCTATTTAGT

               1151   -   1201
RU05403        --> TGATAAA-TAAAAGGC-AGAAGATATTTAGTCTAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0057689      <-- ........................................
ET0029637      <-- ........................................
CT0085468      <-- ........................................
CT0101390      <-- ........................................
CT0119337      <-- ........................................
CT0022213      <-- ........................................
ET0072162      <-- ........................................
CT0006323      <-- ........................................
CT0128611      <-- ........................................
CT0140331      <-- ........................................
RH23Z19        <-- ........................................
RH25AC175      <-- ........................................
ET0066737      <-- ........................................
ET0067347      <-- ........................................
CT0080906      <-- ........................................
ET0062258      <-- ........................................
CT0042855      <-- ........................................
CT0015268      <-- ........................................
CT0089938      <-- TGATAAA-TAAAAGGC-AGAAGATATTTAGTCTAAAAAA.
ET0028640      <-- TGATAAA-TAAAAGGC-AGAAGATATTTAGTCTAAAA...
CT0037229      <-- TGATAAA-TAAAAGGCCAGAAGATATTTAGTCT.......
CT0039144      <-- TGATAAA-TAAAAGGC-AGAAGATATTTAGTCT.......
CT0132611      <-- TGATAAA-TAAAAGGC-AGAAGATATTTAGTCTAAAAAAA
CT0042204      --> ........................................
ET0041801      --> ........................................
RH47BO51       --> ........................................
ET0130751      --> ........................................
ET0132280      --> ........................................
CT0039339      --> ........................................
ET0026880      --> ........................................
ET0138077      --> ........................................
ET0127054      --> ........................................
CT0048962      --> ........................................
CT0085302      --> ........................................
ET0135785      --> ........................................
ET0139414      --> ........................................
ET0140054      --> ........................................
ET0140306      --> ........................................
ET0140313      --> ........................................
ET0138874      --> ........................................
ET0140734      --> ........................................
ET0093262      --> ........................................
CT0096067      --> ........................................
CT0097464      --> ........................................
CT0097515      --> ........................................
CT0092156      --> ........................................
CT0095825      --> ........................................
CT0096066      --> ........................................
CT0096249      --> ........................................
CT0096601      --> ........................................
CT0097491      --> ........................................
CT0097667      --> ........................................
CT0097926      --> ........................................
ET0055315      --> ........................................
ET0117684      --> ........................................
CT0031372      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGT.........
CT0044828      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGT.........
CT0049317      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGT.........
ET0093324      --> TGATAAAATAAAAGGC-AGAAGATATTTAagt........
CT0036180      --> ........................................
CT0022570      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGTaact.....
CT0088442      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGTCT.......
CT0064067      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGTCT.......
CT0064957      --> TGATAAA-TAAAAGGC-AGAAGATATTTAGTCT.......