SNPs of unigene RU05405
               1      -     51
RU05405        --> TTTTTTTTTGATTATCAAA-TTATCGAAATAAAACGCTTCTATATCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> TTTTTTTTTGATTATCAAAATTATCGAAATAAAACGCTTCTATATCACTA
ET0106232      --> .........GATTATCAAA-TTATCGAAATAAAACGCTTCTATATCACTA
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               51     -    101
RU05405        --> TTCACACCGCAGATAATAGAAATGAACAGTGAGATGGGAACTTATTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> TTCACACCGCAGATAATAGAAATGAACAGTGAGATGGGAACTTATTAAGC
ET0106232      --> TTCACACCGCAGATAATAGAAATGAACAGTGAGATGGGAACTTATTAAGC
RH09E157       --> ....................................GGAACTTATTAAGC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               101    -    151
RU05405        --> GATCATCAACAATTCAGTCTTGTCCTCTGCATACATGCCACACTACATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ...............................TACATGCCACACTACATAC
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> GATCATCAACAATTCAGTCTTGTCCTCTGCATACATGCCACACTACATAC
ET0106232      --> GATCATCAACAATTCAGTCTTGTCCTCTGCATACATGCCACACTACATAC
RH09E157       --> GATCATCAACAATTCAGTCTTGTCCTCTGCATACATGCCACACTACATAC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               151    -    201
RU05405        --> ATGCCACACTACAACTATGCTCGTCCGCTAGGAG--AAACGAAAA-GCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ATGCCACAATACAACTATGCTCGTCCCCTAGGAGTAAAACGAAAAAGCAC
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ATGCCACAATACAACTATGCTCGTCCCCTAGGAGTAAAACGAAAA-GCAC
ET0106232      --> ATGCCACAATACAACTATGCTCGTCCCCTAGGAGTAAAACGAAAA-GCAC
RH09E157       --> ATGCCACACTACAACTATGCTCGTCCGCTAGGAG--AAACGAAAA-GCAC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               201    -    251
RU05405        --> ATAAGAGGTTGAGATAAGATTTTATGACACTCTTAGATTGGTTGACCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ATAAAAGGTTGAGATAAGATTTTATGACGCTCTTAGATTGGTTGACCTTT
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ATAAGAGGT.........................................
ET0106232      --> ATAAGAGGT.........................................
RH09E157       --> ATAAGAGGTTGAGATAAGATTTTATGACACTCTTAGATTGGTTGACCTTT
ET0118504      --> ......................cATGACGCTCTTAGATTGGTTGACCTTT
ET0124635      --> ......................cATGACGCTCTTAGATTGGTTGACCTTT
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               251    -    301
RU05405        --> TGGTACAATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- TGGTACAATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> TGGTACAATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
ET0118504      --> TGGTACAATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
ET0124635      --> TGGTACAATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
CT0133875      --> ......AATTTGATCTTTGAGCCACATGTATATAGGCACCAGTACGTAGT
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               301    -    351
RU05405        --> ACATTCCTGCCAAGGCACCCAAGATGAAGCGCGTAAGGAACGATAGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ACATTCCTGCCAAGGCACCCAAGATGAAGCGCGTAAGGAACGATAGTGGC
ET0065605      <-- ..........................................ATAGTGGC
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ACATTCCTGCCAAGGCACCCAAGATGAAGCGCGTAAGGAACGATAGTGGC
ET0118504      --> ACATTCCTGCCAAGGCACCCAAGATGAAACGCGTAAGGAACGATAGTGGC
ET0124635      --> ACATTCCTGCCAAGGCACCCAAGATGAAACGCGTAAGGAACGATAGTGGC
CT0133875      --> ACATTCCTGCCAAGGCACCCAAGATGAAACGCGTAAGGAACGATAGTGGC
RH13J79        --> ACATTCCTGCCAAGGCACCCAAGATGAAGCGCGTAAGGAACGATAGTGGC
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               351    -    401
RU05405        --> TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- TTTACAGGCTCTGACAC.................................
ET0065605      <-- TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
ET0118504      --> TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
ET0124635      --> TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
CT0133875      --> TTTACAGGCTCTGACACATCCTCTGCTTTTGGTCCGAGCTGTAAAGGAGA
RH13J79        --> TTTACAGGCTCTGACACATCCCCTGCTTTTGGTCCGAGCTGTAAAGGAGA
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               401    -    451
RU05405        --> ATCCCCAGATGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................  Ethylene
ET0065605      <-- ATCCCCAGACGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAATC  Ethylene
RH54BU94       <-- ..................................................  WaterDS
CT0078983      <-- ..................................................  Control
CT0079473      <-- ..................................................  Control
ET0097903      <-- ..................................................  Ethylene
CT0122703      <-- ..................................................  Control
CT0061498      <-- ..................................................  Control
ET0126952      <-- ..................................................  Ethylene
CT0074987      <-- ..................................................  Control
CT0052157      <-- ..................................................  Control
CT0068999      <-- ..................................................  Control
CT0076306      <-- ..................................................  Control
ET0101338      --> ..................................................  Ethylene
ET0106232      --> ..................................................  Ethylene
RH09E157       --> ATCCCCAGATGCAGGCTTAACGCCTGTTACAGGACACCCCATTATCAATC  WaterDS
ET0118504      --> ATCCCCAGACGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAAT.  Ethylene
ET0124635      --> ATCCCCAGACGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAAT.  Ethylene
CT0133875      --> ATCCCCAGACGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAATC  Control
RH13J79        --> ATCCCCAGATGCAGGCTTAACGCCTGTTACAGAACACCCCATTATCAATC  WaterDS
ET0087663      --> ...............................................ATC  Ethylene
ET0039579      --> ..................................................  Ethylene
ET0066422      --> ..................................................  Ethylene
CT0136865      --> ..................................................  Control
ET0008249      --> ..................................................  Ethylene
CT0039677      --> ..................................................  Control
CT0049227      --> ..................................................  Control
CT0072305      --> ..................................................  Control
CT0043366      --> ..................................................  Control
CT0121354      --> ..................................................  Control
CT0123525      --> ..................................................  Control

               451    -    501
RU05405        --> CATGGCGGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- CATGGCGGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
RH54BU94       <-- .....................ACCATTTTGGGCCAATT-CTTTT-CAGTT
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> CATGGCGGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> CATGGCGGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
RH13J79        --> CATGGCGGCGAACCCCACGGT.............................
ET0087663      --> CATGGCGGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
ET0039579      --> ......GGCGAACCCCACGGTACCATTTTGGGCCAATT-CTTTT-CAGTT
ET0066422      --> .............................GGGCCAATTTCTTTTTCAGTT
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               501    -    551
RU05405        --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
RH54BU94       <-- GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGT...........
CT0078983      <-- ...................................ATGTACTCTTCCTCC
CT0079473      <-- ...................................ATGTACTCTTCCTCC
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
RH13J79        --> ..................................................
ET0087663      --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
ET0039579      --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
ET0066422      --> GGACATCTTTGAATCCAGCCTTCTCGAACCATTCAATGTACTCTTCCTCC
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               551    -    601
RU05405        --> TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAAC........
RH54BU94       <-- ..................................................
CT0078983      <-- TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
CT0079473      <-- TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> TTGGGGAAAAGCATCCATACATCAG.........................
RH13J79        --> ..................................................
ET0087663      --> TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGATAACCAAAACGT
ET0039579      --> TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
ET0066422      --> TTGGGGAAAAGCATCCATACATCAGCAAAGAAGCGAGACAACCAAAACGT
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               601    -    651
RU05405        --> TGGGTACACAGGACCAATCACGCATGCTTTTCCTCCAAGTTTCAAGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- TGGGTACACAGGACCAATCACACATGCTTTTCCTCCAAGTTTCAAGACCC
CT0079473      <-- TGGGTACACAGGACCAATCACACATGCTTTTCCTCCAAGTTTCAAGACCC
ET0097903      <-- ............................................AGACCC
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> TGGGTACACAGGACCAATCACGCATGCCTTTCCTCCAAGTTTCAAGACCC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> TGGGTACACAGGACCAATC...............................
ET0039579      --> TGGGTACACAGGACCAATCACACATGCTTTTCCTCCAAGTTT........
ET0066422      --> TGGGTACACAGGACCAATCACGCATGCCTTTCCTCCAAGTTTCAAGACCC
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               651    -    701
RU05405        --> TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
CT0079473      <-- TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
ET0097903      <-- TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
CT0122703      <-- .........................TGGGTCTGGCCAGTACTCAATA-TT
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
CT0136865      --> TGTATGCTTCCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
ET0008249      --> .........CCTTGATGCCACGCTGTGGGTCTGGCCAGTACTCAATACTT
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               701    -    751
RU05405        --> CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- CCTGCAGATACATATCGA................................
CT0079473      <-- CCTGCAGATACATATCGA................................
ET0097903      <-- CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
CT0122703      <-- CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> CCTGCAGATACATATCG.................................
CT0136865      --> CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
ET0008249      --> CCTGCAGATACATATCGATCCGCATAATCAGTCCGAAAAGGCAAGTCCTC
CT0039677      --> ..........................ATCAGTCCGAAAAGGCAAGTCCTC
CT0049227      --> ..........................ATCAGTCCGAAAAGGCAAGTCCTC
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               751    -    801
RU05405        --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCTCCTTCTTCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCGCCTTCTTCTTAG
CT0122703      <-- AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCGCCTTCTTCTTAG
CT0061498      <-- .............................................tTTAG
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCTCCTTCTTCTTAG
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCTCCTTCTTCTTAG
ET0008249      --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCTCCTTCTTCTTAG
CT0039677      --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCGCCTTCTTCTTAG
CT0049227      --> AGCATCGCCCTCAATGATCTTGCACTCCTTCAAAGGCGCCTTCTTCTTAG
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               801    -    851
RU05405        --> CCCTAGCTAGCTGATGGGGGGACTGATCAAGAATGGTCACATTCTT-GGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- CCCT-GCTAGCTGATGGGGGGACTGATCAAGAATGGTCACATTCTTTGGC
CT0122703      <-- CCCTAGCTAGCTGATGGGGGGACTGATCAAGAATGGTCACATTCTT-GGC
CT0061498      <-- CCCTAGCTAGCTGATGAGGGGACTGATCAAGAATGGTCACATTCTT-GGC
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> CCCTAGCTAGCTGATGAGGGGACTGATCAAGAATGGTCACATTCTT-GGC
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> CCCTAGCTAGCTGATGAGGGGACTGATCAAGAATGGTCACATTCTT-GGC
ET0008249      --> CCCTAGCTAGCTGATGAGGGGACTGATCAAGAATGGTCACATTCTT-GGC
CT0039677      --> CCCTAGCTAGCTGATGGGGG-ACTGATCAAGAATGGTCACATTCTT-GGC
CT0049227      --> CCCTAGCTAGCTGATGGGGGGACTGATCAAGAATGGTCACATTCTT-GGC
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               851    -    901
RU05405        --> ATCCACATGCTTAACTATCCCCAAGGTAGTGAACCCAGTACCTCCACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ATCCACATG.........................................
CT0122703      <-- ATCCACATGCTTAACTATCCCCAAGGTGGTGAACCCAGTACCTCCAC...
CT0061498      <-- ATCCACATGCTTAACTATCCCCAAGGTAGTGAACCCAGTACCTCCACCCA
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ATCCACATGCTTAACTATCCCCAAGGTGGTGA..................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ATCCACATGCTTAACTATCCCCAAGGTAGTGAACCCAGTACCTCCACCCA
ET0008249      --> ATCCACATG.........................................
CT0039677      --> ATCCACATGCTTAACTATCCCCAAGGTGGTGAACCCAGTACCTCCA....
CT0049227      --> ATCCACATGCTTAACTATCCCCAAGGTGGTGAACCCAGTACCTCCA....
CT0072305      --> ....................CCAAGGTGGTGAACCCAGTACCTCCACCCA
CT0043366      --> .....ctgggttcactaccttggggaTAGTTAAGCCAGTACCTCCACCCA
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               901    -    951
RU05405        --> CATCTACGACAATCATTCTCCTGTCGCTAAGATCAGCTGGCTCAAGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- CATCTACGACAATCATTCTCCTGTCGCTGAGATCAGCTGGCTCAAGTGCC
ET0126952      <-- ..................................................
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> CATCTACGACAATCATTC................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> CATCTACGACAATCATTCTCCTGTCGTTAAGATCAGCTGGCTCAAGTGCA
CT0043366      --> CATCTACGACAATCATTCTCCTGTCGCTGAGATCAGCTGGCTCAAGTGCC
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               951    -   1001
RU05405        --> TCGTCCCTCATGTCCTCAGTCCAATGCCCAGGGTTTATGACATGGTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- TCGTCTCTCATGTCCTCAGTCCAATGCCCAGGGTTTATGACATGGTCATA
ET0126952      <-- .....................................TGACATGGTCATA
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> TCGTCCCTCATGTCCTCAGTCCAGTGCCCAGGGTTTATGACATGGTCATA
CT0043366      --> TCGTCTCTCATGTCCTCAGTCCAATGCCCAGGGTTTATGACATGGTCATA
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               1001   -   1051
RU05405        --> AACAATTGACAGAAACCTATAAAACCAGAAA-GCCTCTTTCTTGTGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- AACAATTGACAGAAACCTA...............................
ET0126952      <-- AACAATTGATAGAAACCTATAAAACCAGAAA-GCCTCTTTCTTGTGCTGA
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> AACAATTGACAGAAACCTATAAAACCAGAAAAGCCTCTTTCTTGTGCTGA
CT0043366      --> AACAATTGACAGAAACCTATAAAACCAGAAA-GCCTCTTTCTTGTGCaga
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               1051   -   1101
RU05405        --> ATGAACCTGGGCTGAGAAGCAGGCCTGGAAGCTGAGACACTACACTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ATGAACCTGGGTTGAGAAGCAGGCCTGGAAGCTGAGACACTACACTTGGG
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ATGAACCTGGGCTGAGAAGCAGGCCTGGAAGCTGAGACACTACACTTGGG
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               1101   -   1151
RU05405        --> CACAATGGCTCTGGCACCAGACTTGGAAATTCTAGTGTTTGAGACCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- CACAATGGCTCTGGCACCAGACTTGGAAATTCTAGTGTTTGATACCAAAC
CT0074987      <-- ..................................................
CT0052157      <-- ..................................................
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> CACA..............................................
CT0043366      --> ..................................................
CT0121354      --> ......................................TTGAGACCAAAC
CT0123525      --> ......................................TTGAGACCAAAC

               1151   -   1201
RU05405        --> CCATCTTCAGAAACTGCTTCCCATGAAAATCCGACCCAACAAAACCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- CCATCTTCAGAAACTGC.................................
CT0074987      <-- ...............GCTTCCCATGAAAATCCGACCCAACAAAACCCAAC
CT0052157      <-- ..............................CCGACCCAACAAAACCCAAC
CT0068999      <-- ..................................................
CT0076306      <-- ..................................................
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> CCATCTTCAGAAACTGCTTCCCATGAAAATCCGACCCAACAAAACCCAAC
CT0123525      --> CCATCTTCAGAAACTGCTTCCCATGAAAATCCGACCCAACAAAACCCAAC

               1201   -   1251
RU05405        --> CCATTTGGGGATAAACCTCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- CCATTTGGGGATAAACCTCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
CT0052157      <-- CCATTTGGGGATAAACCTCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
CT0068999      <-- ..................CGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
CT0076306      <-- .................aCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> CCATTTGGGGATAAACCTCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG
CT0123525      --> CCATTTGGGGATAAACCTCGCCGGAGTGTGAGATGCTCGGCCCCGTTGAG

               1251   -   1301
RU05405        --> CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
CT0052157      <-- CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
CT0068999      <-- CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
CT0076306      <-- CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG
CT0123525      --> CATCGCAGAGGCCATGGTTTGATCAACTTGAGCGAGCAAGGGAGGTTGAG

               1301   -   1351
RU05405        --> AAGAAGAGAGAAACTGGTCACGGAGTGGAACACGAACCACAGGTTTT-GG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- AAGAAGAGAGAAACTGGTCACGGAGTGGAACACGAACCACAGGTTTT-GG
CT0052157      <-- AAGAAGAGAGAAACTGGTCACGGAGTGGAACACGAACCACAGGTTTT-GG
CT0068999      <-- AAGAAGAGAGAAACTGGTCACGGAGTGGAACACGAACCACAGGTTTT-GG
CT0076306      <-- AAGAAGAGAGAAACTGGTCACGGAGTGGAACACGAACCACAGGTTTTTGG
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> AAGAAGAGAGAAACTGGTCACGGAGTGG......................
CT0123525      --> AAGAAGAGAGAAACTGGTCACGGAGTGG......................

               1351   -   1401
RU05405        --> CAAA-GACGATACAAAGTACAAACAAAGTGCTTAGAGCATTCTTGTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0070943      <-- ..................................................
ET0065605      <-- ..................................................
RH54BU94       <-- ..................................................
CT0078983      <-- ..................................................
CT0079473      <-- ..................................................
ET0097903      <-- ..................................................
CT0122703      <-- ..................................................
CT0061498      <-- ..................................................
ET0126952      <-- ..................................................
CT0074987      <-- CAAA-GACGATACAAAGTACAAACAAAGTGCTTAGAGCATTCTTGTGGTG
CT0052157      <-- CAAA-GACGATACAAAGTACAAACAAAGTGCTTAGAGCATTCTTGTGGTG
CT0068999      <-- CAAA-GACGATACAAAGTACAAACAAAGTGCTTAGAGCATTCTTGTGGTG
CT0076306      <-- CAAAAGACGATACAAAGTACAAACAAAGTGCTTAGAGCATTCTTGTGGTG
ET0101338      --> ..................................................
ET0106232      --> ..................................................
RH09E157       --> ..................................................
ET0118504      --> ..................................................
ET0124635      --> ..................................................
CT0133875      --> ..................................................
RH13J79        --> ..................................................
ET0087663      --> ..................................................
ET0039579      --> ..................................................
ET0066422      --> ..................................................
CT0136865      --> ..................................................
ET0008249      --> ..................................................
CT0039677      --> ..................................................
CT0049227      --> ..................................................
CT0072305      --> ..................................................
CT0043366      --> ..................................................
CT0121354      --> ..................................................
CT0123525      --> ..................................................

               1401   -   1451
RU05405        --> G-TACTTGCAGAGTG
                   ~~~~~~~~~~~~~~~
ET0070943      <-- ...............
ET0065605      <-- ...............
RH54BU94       <-- ...............
CT0078983      <-- ...............
CT0079473      <-- ...............
ET0097903      <-- ...............
CT0122703      <-- ...............
CT0061498      <-- ...............
ET0126952      <-- ...............
CT0074987      <-- G-TACTTGCAGAGTG
CT0052157      <-- G-TACTTGCAGAGTG
CT0068999      <-- GGTACTTGCAGAGTG
CT0076306      <-- G-TACTTGCAGAGTG
ET0101338      --> ...............
ET0106232      --> ...............
RH09E157       --> ...............
ET0118504      --> ...............
ET0124635      --> ...............
CT0133875      --> ...............
RH13J79        --> ...............
ET0087663      --> ...............
ET0039579      --> ...............
ET0066422      --> ...............
CT0136865      --> ...............
ET0008249      --> ...............
CT0039677      --> ...............
CT0049227      --> ...............
CT0072305      --> ...............
CT0043366      --> ...............
CT0121354      --> ...............
CT0123525      --> ...............