SNPs of unigene RU05447
               1      -     51
RU05447        --> GTATTTTCTTGGTAATTGTAATTTTGGTCTAAGTTCTTATTTAAACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> GTATTTTCTTGGTAATTGTAATTTTGGTCTAAGTTCTTATTTAAACTTGG
CT0064107      --> ......................................taTTAAACTTGG
CT0130371      --> ........................................TTAAACTTGG
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               51     -    101
RU05447        --> -TATTATTGAAGATGCGGCCAACAGAAA-CCGTTTGGCAAAA-CTTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> -TATTATTGAAGATGCGGCCAACAGAAA-CCGTTTGGCAAAA-CTTTTAA
CT0064107      --> GTATTATTGAAGATGCAGCCAACAGAAAACCGTCTGGCAAAAACTTTTAA
CT0130371      --> -TATTATTGAAGATGCGGCCAACAGAAA-CCGTTTGGCAAAA-CTTTTAA
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               101    -    151
RU05447        --> GATTTGAGAGTACCAAGTCAGATGGGAAACTGACTTCACTGGATCAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ...gTGAGAGTACCAAGTCAGATGGGAAACTGACTTCACTGGATCAGTAC
ET0106225      <-- ...gTGAGAGTACCAAGTCAGATGGGAAACTGACTTCACTGGATCAGTAC
CT0104459      <-- ..........TACCAAGTCAGATGGCAGACTGACTTCACTGGATCAGTAC
CT0060495      <-- .................TCAGATGGGAAACTGACTTCACTGGATCAGTAC
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> GATTTGAGAGTACCAAGTCAGATGGCAGACTGACTTCACTGGATCAGTAC
CT0064107      --> GATTTGAGAGTACCAAGTCAGATGGGAAACTGACTTCACTGGATCAGTAC
CT0130371      --> GATTTGAGAGTACCAAGTCAGATGGGAAACTGACTTCACTGGATCAGTAC
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               151    -    201
RU05447        --> ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ATTTCA-GGATGAAATCTGGGCAGAAGGACATATTTTATCTCACTGGAAC  Ethylene
ET0106225      <-- ATTTCAAGGATGAAATCTGGGCAGAAGGACA-ATTTTATCTCACTGGAAC  Ethylene
CT0104459      <-- ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0060495      <-- ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0089287      <-- ............AAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0034019      <-- ................CTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
ET0057958      <-- ..................................................  Ethylene
ET0058626      <-- ..................................................  Ethylene
ET0062676      <-- ..................................................  Ethylene
ET0068516      <-- ..................................................  Ethylene
ET0080550      <-- ..................................................  Ethylene
CT0001421      <-- ..................................................  Control
CT0004451      <-- ..................................................  Control
CT0004440      <-- ..................................................  Control
ET0139929      <-- ..................................................  Ethylene
ET0089260      <-- ..................................................  Ethylene
CT0040636      <-- ..................................................  Control
CT0121349      <-- ..................................................  Control
ET0098865      <-- ..................................................  Ethylene
ET0012857      <-- ..................................................  Ethylene
ET0056998      <-- ..................................................  Ethylene
CT0018167      --> ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0064107      --> ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0130371      --> ATTTCAAGGATGAAATCTGGGCAGAAGGACATATTTTATCTTACTGGAAC  Control
CT0005093      --> ..................................................  Control
ET0032085      --> ..................................................  Ethylene
ET0048189      --> ..................................................  Ethylene
RH38BA27       --> ..................................................  WaterDS
ET0132272      --> ..................................................  Ethylene
ET0135171      --> ..................................................  Ethylene
ET0007485      --> ..................................................  Ethylene
ET0007986      --> ..................................................  Ethylene
ET0011513      --> ..................................................  Ethylene
ET0022297      --> ..................................................  Ethylene
ET0023100      --> ..................................................  Ethylene
ET0125891      --> ..................................................  Ethylene
ET0136727      --> ..................................................  Ethylene
ET0040354      --> ..................................................  Ethylene
ET0136376      --> ..................................................  Ethylene
ET0140207      --> ..................................................  Ethylene
CT0029562      --> ..................................................  Control
CT0118074      --> ..................................................  Control
CT0059986      --> ..................................................  Control
ET0076355      --> ..................................................  Ethylene
CT0057840      --> ..................................................  Control
ET0080072      --> ..................................................  Ethylene
ET0108496      --> ..................................................  Ethylene
CT0031856      --> ..................................................  Control
ET0038627      --> ..................................................  Ethylene
ET0057003      --> ..................................................  Ethylene
ET0062818      --> ..................................................  Ethylene
ET0063018      --> ..................................................  Ethylene
ET0066273      --> ..................................................  Ethylene
ET0087135      --> ..................................................  Ethylene
ET0088386      --> ..................................................  Ethylene
ET0096520      --> ..................................................  Ethylene
ET0098325      --> ..................................................  Ethylene
ET0094351      --> ..................................................  Ethylene
ET0103666      --> ..................................................  Ethylene
ET0068046      --> ..................................................  Ethylene
ET0093914      --> ..................................................  Ethylene
ET0142768      --> ..................................................  Ethylene

               201    -    251
RU05447        --> CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
ET0106225      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
CT0104459      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
CT0060495      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
CT0089287      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
CT0034019      <-- CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAA..
CT0064107      --> CAGCAAGGAACAATTGGATAATTCTCCTTTCCTTGAGCGGCTTAAGAAGA
CT0130371      --> CAGCAAGGAACAATTGGA................................
CT0005093      --> ................................................GA
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               251    -    301
RU05447        --> AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
ET0106225      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
CT0104459      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
CT0060495      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
CT0089287      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
CT0034019      <-- AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATT.....
CT0130371      --> ..................................................
CT0005093      --> AAGGATACGAGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
ET0032085      --> .........AGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
ET0048189      --> .........AGGTTATCTTTTTCACCGATCCAGTTGATGAATATTTGATG
RH38BA27       --> ..............ATCTTTTTCACCGATCCGGTTGATGAATATTTGATG
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               301    -    351
RU05447        --> CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- CAATACTTGATGGATTATGAAGACAAGAAATTCC................
ET0106225      <-- CAATACTTGATGGATTATGAAGACAAGAAATTCC................
CT0104459      <-- CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAA....
CT0060495      <-- CAA...............................................
CT0089287      <-- CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
CT0034019      <-- CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
ET0032085      --> CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
ET0048189      --> CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
RH38BA27       --> CAATACTTGATGGATTATGAAGACAAGAAATTCCAGAATGTGTCAAAGGA
ET0132272      --> ...........................................CAAAGGA
ET0135171      --> ...........................................CAAAGGA
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               351    -    401
RU05447        --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
CT0034019      <-- GGGTTTG...........................................
ET0057958      <-- ..........taCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0058626      <-- ..........taCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0062676      <-- ..........taCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0068516      <-- ..........taCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0080550      <-- ..........taCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0032085      --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0048189      --> GGGTTTGAAACTCGGTAAAAGACTCAAAAGATAAGGAACTCAAGGAATCA
RH38BA27       --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0132272      --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0135171      --> GGGTTTGAAACTCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0007485      --> ...........TCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0007986      --> ...........TCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0011513      --> ...........TCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0022297      --> ...........TCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0023100      --> ...........TCGGTAAA-GACTCAAAAGATAAGGAACTCAAGGAATCA
ET0125891      --> ..........................................AGGAATCA
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               401    -    451
RU05447        --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- TACAAGGAACTCACTAAATGG.............................
CT0034019      <-- ..................................................
ET0057958      <-- TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0058626      <-- TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0062676      <-- TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0068516      <-- TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0080550      <-- TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCA..........
ET0032085      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0048189      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
RH38BA27       --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0132272      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0135171      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0007485      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0007986      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0011513      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0022297      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0023100      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0125891      --> TACAAGGAACTCACTAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0136727      --> ....aactacaactaAAATGGTGGAAGGGTGCTCTTGCCAGTGACAATGT
ET0040354      --> .......................................AGTGACAATGT
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               451    -    501
RU05447        --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0058626      <-- TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0062676      <-- TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0068516      <-- TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0080550      <-- TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
CT0001421      <-- .................CCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
CT0004451      <-- .................CCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
CT0004440      <-- ..................CAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGACCACCCCGTGCGTGGTT
ET0048189      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGACCACCCCGTGCGTGGTT
RH38BA27       --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0132272      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0135171      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0007485      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0007986      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0011513      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0022297      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0023100      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0125891      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0136727      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0040354      --> TGATGATGTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0136376      --> .......GTGAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
ET0140207      --> ....agtagaAAGCTGTCCAACCGATTGGCTGAC-ACCCCGTGCGTGGTT
CT0029562      --> ................................AC-ACCCCGTGCGTGGTT
CT0118074      --> .....................................CCCGTGCGTGGTT
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               501    -    551
RU05447        --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0058626      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0062676      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0068516      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0080550      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0001421      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0004451      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0004440      <-- GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0139929      <-- ...........................................TGCAGTC
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> GTTACTTac.........................................
ET0048189      --> GTTACTTac.........................................
RH38BA27       --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0132272      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0135171      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0007485      --> GTTACTT...........................................
ET0007986      --> GTTACTT...........................................
ET0011513      --> GTTACTT...........................................
ET0022297      --> GTTACTT...........................................
ET0023100      --> GTTACTT...........................................
ET0125891      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0136727      --> GT-ACTTC..........................................
ET0040354      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0136376      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
ET0140207      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0029562      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0118074      --> GTTACTTCAAAGTTTGGATGGAGCGCAAACATGGAGAAGATCATGCAGTC
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               551    -    601
RU05447        --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGC..........
ET0058626      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGC..........
ET0062676      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGC..........
ET0068516      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGC..........
ET0080550      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGC..........
CT0001421      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
CT0004451      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
CT0004440      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
ET0139929      <-- TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAGAGGG
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
ET0132272      --> TCAGACTTTGTCGGATTC................................
ET0135171      --> TCAGACTTTGTCGGATTC................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
ET0136727      --> ..................................................
ET0040354      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
ET0136376      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
ET0140207      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAAAGGG
CT0029562      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAGAGGG
CT0118074      --> TCAGACTTTGTCGGATTCTGCCAAGCAAGCATATATGCGCGGCAAGAGGG
CT0059986      --> ..............................ATATATGCGCGGCAAGAGGG
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               601    -    651
RU05447        --> TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
CT0004451      <-- TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
CT0004440      <-- TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
ET0139929      <-- TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
ET0089260      <-- .................ggaCACCCAA-TCATCAAGGAGCTCAGGGAGAG
CT0040636      <-- ..................................................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> T.................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> TACTTGAGATTAATCCAAGG..............................
ET0136727      --> ..................................................
ET0040354      --> T.................................................
ET0136376      --> TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
ET0140207      --> TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGA.
CT0029562      --> TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
CT0118074      --> TACTTGAGATTAATCCAAGGCACCCAA-TCATCAAGGAGCTCAGGGAGAG
CT0059986      --> TACTTGAGATTAATCCAAGGCACCCAAATCATCAAGGAGCTCAGGGAGAG
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               651    -    701
RU05447        --> AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- AGTGGTAAA.........................................
CT0004451      <-- AGTGGTAAA.........................................
CT0004440      <-- AGTGGTAAA.........................................
ET0139929      <-- AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTA
ET0089260      <-- AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTA
CT0040636      <-- ...........................TGTGAAGCATACAGCACAGCTTA
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGC...............
ET0140207      --> ..................................................
CT0029562      --> AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAG.........
CT0118074      --> AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAG................
CT0059986      --> AGTGGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTA
ET0076355      --> ......AAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCACAGCTTA
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               701    -    751
RU05447        --> TTTACCAGACTGCACTCATGGAGA--GT--GGCTTTGCTCTTCCTGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- TTTACCAGACTGCACTCATGGAGA--GT--GGCTTTGCTCTTCCTGACCC
ET0089260      <-- TTTACCAGACTGCACTCATGGAGA--GT--GGCTTTGCTCTTCCTGACCC
CT0040636      <-- TTTACCAGACTGCACTCATGGAGA--GT--GGCTTTGCTCTTCCTGACCC
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> TTTACCAGACTGCACTCATGGAGAAAGTAAGGCTTTGCTCTTCCTGACCC
ET0076355      --> TTTACCAGACTGCACTCATGGAGA--GT--GGCTTTGCTCTTCCTGACCC
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               751    -    801
RU05447        --> GAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- GAAGGATTTTGCCTC...................................
ET0089260      <-- GAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACA
CT0040636      <-- GAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACA
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> GAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACA
ET0076355      --> GAAGGATTTTGCCTCCCGCATCTACAGTTCAGTGAAATCTAGCCTGAACA
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               801    -    851
RU05447        --> TCAACCCTGATGCCACAGTTGAGGAGGAAGATGATACCGAAGAACCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- TCAACCCTGATGCCACAGTCGAGGAGGAAGATGATACCGAAGAACCAG..
CT0040636      <-- TCAACCCTGATGCCACAGTTGAGGAGGAAGATGATACCGAAGAACCAGCT
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> TCA...............................................
ET0076355      --> TCAACCCTGATGCCACAGTTGAGGAGGAAGATGATACCGAAGAACCAGCT
CT0057840      --> .......TGATGCCACAGTTGAGGAGGAAGATGATACCGAAGAACCAGCT
ET0080072      --> ....................GAGGAGGAAGATGATACCGAAGAACCAGCT
ET0108496      --> ....................GAGGAGGAAGATGATACCGAAGAACCAGCT
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               851    -    901
RU05447        --> GAGGCTGAAACTCCCGCAAACGAAGCTACCCCTGAGGCTGAATCTGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- GAGGCTGAAACTCCCGCAAACGAAGCTACCCCTG................
CT0121349      <-- ..................................................
ET0098865      <-- ..................................................
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> GAGGCTGAAACTCCCGCAAACGAAGCTA......................
CT0057840      --> GAGGCTGAAACTCCCGCAAACGAAGCTACCCCTGAGGCTGAATCTGCTAA
ET0080072      --> GAGGCCGAAACTCCCGCAAACGAAGCTACCCCTGAGGCTGAATCTGCTAA
ET0108496      --> GAGGCCGAAACTCCCGCAAACGAAGCTACCCCTGAGGCTGAATCTGCTAA
CT0031856      --> ..................................................
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               901    -    951
RU05447        --> TGCAGATTCACAGAAGGACGAGTTGTAGGTTGCTTAATACTTTTACACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- .....ATTCACAGAAGGACGAGTTGTAGGTTGCTTAATACTTTTACACCT
ET0098865      <-- .............................TTGCTTAATACTTTTACACCT
ET0012857      <-- ..................................................
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> TGAAGATTCACAGAAGGACGAGTTGTAGGTTGCTTAATACTTTTACACCT
ET0080072      --> TGCAGATTCACAGAAGGACGAGTTGTAGGTTGCTTAATACTTTTACACCT
ET0108496      --> TGCAGATTCACAGAAGGACGAGTTGTAGGTTGCTTAATACTTTTACACCT
CT0031856      --> .......................................CTTTTACACCT
ET0038627      --> ..................................................
ET0057003      --> ..................................................
ET0062818      --> ..................................................
ET0063018      --> ..................................................
ET0066273      --> ..................................................
ET0087135      --> ..................................................
ET0088386      --> ..................................................
ET0096520      --> ..................................................
ET0098325      --> ..................................................
ET0094351      --> ..................................................
ET0103666      --> ..................................................
ET0068046      --> ..................................................
ET0093914      --> ..................................................
ET0142768      --> ..................................................

               951    -   1001
RU05447        --> AATAGGCTTTTC-AGCCTTCCATGGTTCAGCTTTTAGAGAAGCGGAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- AATAGGCTTTTCTAGCCTTCCATGGTTCAGCCTTTAGAGAAGCGGAAATC
ET0098865      <-- AATAGGCTTTTC-AGCCTTCCATGGTTCAGCTTTTAGAGAAGCGGAAATC
ET0012857      <-- ......................cttTTCAGCCTTTAGAGAAGCGGAAATC
ET0056998      <-- ..................................................
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> AATAGGCTTTTC-AGCCTTCCATGGTTCAGCCTTTAGAGAAGCGGAAATC
ET0080072      --> AATAGGCTTTTC-AGCCTTCCATGGTTCAGCTTTTAGAGAAGCGGAAATC
ET0108496      --> AATAGGCTTTTC-AGCCTTCCATGGTTCAGCTTTTAGAGAAGCGGAAATC
CT0031856      --> AATAGGCTTTTC-AGCCTTCCATGGTTCAGCCTTTAGAGAAGCGGAAATC
ET0038627      --> ...................CCATGGTTCAGCTTTTAGAGAAGCGGAAATC
ET0057003      --> ..............................................AATC
ET0062818      --> ..............................................AATC
ET0063018      --> ..............................................AATC
ET0066273      --> ..............................................AATC
ET0087135      --> ..............................................AATC
ET0088386      --> ..............................................AATC
ET0096520      --> ..............................................AATC
ET0098325      --> ..............................................AATC
ET0094351      --> .............................................aatTC
ET0103666      --> .............................................aatTC
ET0068046      --> ............................................aattcg
ET0093914      --> ............................................aattcg
ET0142768      --> ..................................................

               1001   -   1051
RU05447        --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- ACTGCATGGCTC-ACTTTTGA--TTCCCTTTGTTGAAGTTAAAAACATTA
ET0098865      <-- GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0012857      <-- ACTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0056998      <-- ....................................AGTTAA-GACATTA
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ACTGCATGGCTC-ACTTTTGA--TTtcc......................
ET0080072      --> GCTGCATGGCTCTACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0108496      --> GCTGCATGGCTCTACTTTTGACTTTCCCGTTGTTGAAGTTAA-GACATTA
CT0031856      --> ACTGCATGGCTC-ACTTTTGA--TTCCCTTTGTTGAAGTTAAAAACATTA
ET0038627      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0057003      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0062818      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0063018      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0066273      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0087135      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0088386      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0096520      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0098325      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0094351      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0103666      --> GCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0068046      --> tCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0093914      --> tCTGCATGGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA
ET0142768      --> .......GGCTC-ACTTTTGA--TTCCCGTTGTTGAAGTTAA-GACATTA

               1051   -   1101
RU05447        --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGTCTCCAGCATTT
ET0098865      <-- GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0012857      <-- GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGTCTCCAGCATCT
ET0056998      <-- GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> GATAATAGGTTTACTGTAATCATA..........................
ET0108496      --> GATAATAGGTTTACTGTAATCATA..........................
CT0031856      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGTCTCCAGCATTT
ET0038627      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0057003      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0062818      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0063018      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0066273      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0087135      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0088386      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0096520      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0098325      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0094351      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0103666      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0068046      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0093914      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT
ET0142768      --> GATAATAGGTTTACTGTAATCATATAGCCTGAATTTTGCCTCCAGCATTT

               1101   -   1151
RU05447        --> TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- ..................................................
ET0106225      <-- ..................................................
CT0104459      <-- ..................................................
CT0060495      <-- ..................................................
CT0089287      <-- ..................................................
CT0034019      <-- ..................................................
ET0057958      <-- ..................................................
ET0058626      <-- ..................................................
ET0062676      <-- ..................................................
ET0068516      <-- ..................................................
ET0080550      <-- ..................................................
CT0001421      <-- ..................................................
CT0004451      <-- ..................................................
CT0004440      <-- ..................................................
ET0139929      <-- ..................................................
ET0089260      <-- ..................................................
CT0040636      <-- ..................................................
CT0121349      <-- TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAATACA
ET0098865      <-- TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAATACA
ET0012857      <-- TAGTTAACGAGTTTCAGTGAt.............................
ET0056998      <-- TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAATACA
CT0018167      --> ..................................................
CT0064107      --> ..................................................
CT0130371      --> ..................................................
CT0005093      --> ..................................................
ET0032085      --> ..................................................
ET0048189      --> ..................................................
RH38BA27       --> ..................................................
ET0132272      --> ..................................................
ET0135171      --> ..................................................
ET0007485      --> ..................................................
ET0007986      --> ..................................................
ET0011513      --> ..................................................
ET0022297      --> ..................................................
ET0023100      --> ..................................................
ET0125891      --> ..................................................
ET0136727      --> ..................................................
ET0040354      --> ..................................................
ET0136376      --> ..................................................
ET0140207      --> ..................................................
CT0029562      --> ..................................................
CT0118074      --> ..................................................
CT0059986      --> ..................................................
ET0076355      --> ..................................................
CT0057840      --> ..................................................
ET0080072      --> ..................................................
ET0108496      --> ..................................................
CT0031856      --> TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAATACA
ET0038627      --> TAGTTAACGAGTTTCAGTGACTTATGTCATGTATTTTCTTTGCAAAa...
ET0057003      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0062818      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0063018      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0066273      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0087135      --> TAGTTAACGAGTTTCAGTGAaactt.........................
ET0088386      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0096520      --> TAGTTAACGAGTTTCAGTGAaactt.........................
ET0098325      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0094351      --> TAGT-AACGAGTTTCAGTGAactt..........................
ET0103666      --> TAGTTAACGAGTTTCAGTGAaactt.........................
ET0068046      --> TAGTTAACGAGTTTCAGTGAactt..........................
ET0093914      --> TAGTTAACGAGTTTCAGTGAaactt.........................
ET0142768      --> TAGTTAACGAGTTTCAGTGAactt..........................

               1151   -   1201
RU05447        --> ATGTTTTTCCATCTGATTGTGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
ET0075575      <-- .........................
ET0106225      <-- .........................
CT0104459      <-- .........................
CT0060495      <-- .........................
CT0089287      <-- .........................
CT0034019      <-- .........................
ET0057958      <-- .........................
ET0058626      <-- .........................
ET0062676      <-- .........................
ET0068516      <-- .........................
ET0080550      <-- .........................
CT0001421      <-- .........................
CT0004451      <-- .........................
CT0004440      <-- .........................
ET0139929      <-- .........................
ET0089260      <-- .........................
CT0040636      <-- .........................
CT0121349      <-- ATGTTTTTCCATC............
ET0098865      <-- ATGTTTTTCCATCTGATTGTGCTTC
ET0012857      <-- .........................
ET0056998      <-- ATGTTTTTCCATCTGATTGTGCTTC
CT0018167      --> .........................
CT0064107      --> .........................
CT0130371      --> .........................
CT0005093      --> .........................
ET0032085      --> .........................
ET0048189      --> .........................
RH38BA27       --> .........................
ET0132272      --> .........................
ET0135171      --> .........................
ET0007485      --> .........................
ET0007986      --> .........................
ET0011513      --> .........................
ET0022297      --> .........................
ET0023100      --> .........................
ET0125891      --> .........................
ET0136727      --> .........................
ET0040354      --> .........................
ET0136376      --> .........................
ET0140207      --> .........................
CT0029562      --> .........................
CT0118074      --> .........................
CT0059986      --> .........................
ET0076355      --> .........................
CT0057840      --> .........................
ET0080072      --> .........................
ET0108496      --> .........................
CT0031856      --> ATGTTTTT.................
ET0038627      --> .........................
ET0057003      --> .........................
ET0062818      --> .........................
ET0063018      --> .........................
ET0066273      --> .........................
ET0087135      --> .........................
ET0088386      --> .........................
ET0096520      --> .........................
ET0098325      --> .........................
ET0094351      --> .........................
ET0103666      --> .........................
ET0068046      --> .........................
ET0093914      --> .........................
ET0142768      --> .........................