SNPs of unigene RU05555
               1      -     51
RU05555        --> TTGCACAAAGACATAGAGAGAGAGATAGCTGATATTCAGAAAAGGAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- TTGCACAAAGACATAGAGAGAGAGATAGCTGATATTCAGAAAAGGAGATT
ET0050427      <-- ............................................aAGATT
ET0051948      <-- ............................................aAGATT
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               51     -    101
RU05555        --> CTGACCTCAGCATCTCAGTACGAGATCATGTGAAGACTGATGAATTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- CTGACCTCAGCATCTCAGTACGAGATCATGTGAAGACTGATGAATTGTCT
ET0050427      <-- CTGACCTCATCATCTCAGTACGAGATCATGTGAAGACTGATGAATTGTCT
ET0051948      <-- CTGACCTCATCATCTCAGTACGAGATCATGTGAAGACTGATGAATTGTCT
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ....................gcAGATCATGTGAAGACTGATGAATTGTCT
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               101    -    151
RU05555        --> ACTACAAGGGAGTATACTAGATCGCTGCTTCAAATAAACTCATTATTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ACTACAAGGGAGTATACTAGATCGCTGCTTCAAATAAACTCATTATTCAA
ET0050427      <-- ACTACAAGGGAGTATACTAGATCGCTGCTTCAAATAAACTCATTATTCAA
ET0051948      <-- ACTACAAGGGAGTATACTAGATCGCTGCTTCAAATAAACTCATTATTCAA
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ACTACAAGGGAGTATGCTAGATCGCTGCTTCAAATAAACTCCTTATTCAA
ET0134150      --> ...............attcgtcttgtctTTCAAATAAACTCATTATTCAA
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               151    -    201
RU05555        --> AACGTAGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- AACGTAGCAATTTATact................................
ET0050427      <-- AACGTAGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
ET0051948      <-- AACGTAGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> AACGTAGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
ET0134150      --> AACGTAGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
ET0062835      --> .....AGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
ET0067733      --> .....AGCAATTTATCTATAGAAAACTGGAAAAATCTTTATATAGTTATC
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               201    -    251
RU05555        --> ATTCAGATCTTTAGTACAGTCTTTCTTACATACTTTTAACATCGCTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ATTCAGATCTTTAGTACAGTCTTTCTTACATACTTTTAACATCGCTGCTA
ET0051948      <-- ATTCAGATCTTTAGTACAGTCTTTCTTACATACTTTTAACATCGCTGCTA
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ATTCAGATCTTTAGTACAGTCTTTCTTACATACTTTTAACATCGCTGCTA
ET0134150      --> ATTCAGATCTTTAGTACAGTCTTTCTTACATACTTTTAACATCCCTGCTA
ET0062835      --> ATTCAGATCTTTAGTA--GTTTTTCTTACATACTTTTAACATCGCTGCTA
ET0067733      --> ATTCAGATCTTTAGTA--GTTTTTCTTACATACTTTTAACATCGCTGCTA
RH59CF56       --> ...............ACAGTCTTTCTTACATACTTTTAACATCGCTGCTA
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               251    -    301
RU05555        --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................  Ethylene
ET0050427      <-- GGAATACAAAGCTGAAACTAGAAAGTCAa.....................  Ethylene
ET0051948      <-- GGAATACAAAGCTGAAACTAGAAAGTCAa.....................  Ethylene
CT0013623      <-- .............................CTCAATCCCACGTGGATGCCA  Control
ET0015896      <-- ..................................................  Ethylene
ET0016157      <-- ..................................................  Ethylene
CT0137581      <-- ..................................................  Control
ET0038283      <-- ..................................................  Ethylene
CT0109683      <-- ..................................................  Control
CT0080479      --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA  Control
ET0134150      --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA  Ethylene
ET0062835      --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA  Ethylene
ET0067733      --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA  Ethylene
RH59CF56       --> GGAATACAAAGCTGAAACTAGAAAGTCAGCTCAATCCCACGTGGATGCCA  WaterDS
CT0098954      --> ..................................................  Control
ET0001023      --> ..................................................  Ethylene
CT0031815      --> ..................................................  Control
CT0048892      --> ..................................................  Control
CT0109239      --> ..................................................  Control
CT0003782      --> ..................................................  Control
CT0088180      --> ..................................................  Control
ET0135867      --> ..................................................  Ethylene

               301    -    351
RU05555        --> --ACTTTGATCATCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................  Ethylene
ET0050427      <-- ..................................................  Ethylene
ET0051948      <-- ..................................................  Ethylene
CT0013623      <-- --ACTTTGATCATCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA  Control
ET0015896      <-- ..................................................  Ethylene
ET0016157      <-- ..................................................  Ethylene
CT0137581      <-- ..................................................  Control
ET0038283      <-- ..................................................  Ethylene
CT0109683      <-- ..................................................  Control
CT0080479      --> --ACTTTGA.........................................  Control
ET0134150      --> CAACTTTGATCGTCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA  Ethylene
ET0062835      --> CAACTTTGATCATCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA  Ethylene
ET0067733      --> CAACTTTGATCATCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA  Ethylene
RH59CF56       --> --ACTTTGATCATCAGCATCATCAGTTCTTCACTGCATTTCAGACACATA  WaterDS
CT0098954      --> .....................................agacacatatATA  Control
ET0001023      --> ..................................................  Ethylene
CT0031815      --> ..................................................  Control
CT0048892      --> ..................................................  Control
CT0109239      --> ..................................................  Control
CT0003782      --> ..................................................  Control
CT0088180      --> ..................................................  Control
ET0135867      --> ..................................................  Ethylene

               351    -    401
RU05555        --> TTTTTGCTCAATGTCTGCATACGCATTCCTATGCTTTTTCTCCATTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- TTTTTGCTCAATGTATGCATACGCATTCCTATGCTTTTTCTCCATTATAT
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> Tatta.............................................
ET0062835      --> TTTTTGCTCAATGTCTGCATACGCATTCCTA...................
ET0067733      --> TTTTTGCTCAATGTCTGCATACGCATTCCTAT..................
RH59CF56       --> TTTTTGCTCAATGTCTGCATACGCATTCCTATGCTTTTTCTCCATTATAT
CT0098954      --> TTTTTACTCAATGTCTGCATACGCATTCCTATGCTTTTTCTCCATTATAT
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               401    -    451
RU05555        --> TTAGCTCTACTTTCAAGCCCCCAACCTCTACCCAGCACTCCTTTGCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- TTAGCTCTACTTTCAAGCCCCCAACCTCTACCCAGCACTCCTTTGCCTCA
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TTAGCTCTACTTTCAACCCCCCAACCTCTACCCAGCACTCCTTTGCCTCA
CT0098954      --> TTAGCTCTACTTTCAA-CCCCCAACCTCTA....................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               451    -    501
RU05555        --> TGCTCCAATTCAGCATTTCCAAATGATCAGATTGCTGAAAATAATGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- TGCTCCAATTCAGCATTTCCA.............................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TGCTCCAATTCAGCATTTCCAAATGATCAGATTGCTGAAAATAATGAGGG
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               501    -    551
RU05555        --> AAAAGCATAGGAATGAGTATAAAACACTTGAGCAAAAGCACTAACAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> AAAAGCATAGGAATGAGTATAAAACACTTGAGCAAAAGCACTAACAAGCC
CT0098954      --> ..................................................
ET0001023      --> ....................AAAACACTTGAGCAAAAGCACTAACAAGCC
CT0031815      --> ..................................AAAGCACTAACAAGCC
CT0048892      --> ..................................AAAGCACTAACAAGCC
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               551    -    601
RU05555        --> TCCCACAAAAAGATATTTCTCATTTTGCACTTGCTTTTTGTGATTAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TCCCACAAAAAGATATTTCTCATTTTGCACTTGCTTTTTGTGATTAGCTG
CT0098954      --> ..................................................
ET0001023      --> TCCCACAAAAAGATATTTC...............................
CT0031815      --> TCCCACAAAAAGATATTTCTCATTTTGCACTTGCTTTTTGTGATTAGCTG
CT0048892      --> TCCCACAAAAAGATATTTCTCATTTTGCACTTGCTTTTTGTGATTAGCTG
CT0109239      --> .........................TGCACTTGCTTTTTGTGATTAGCTG
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               601    -    651
RU05555        --> GTTGTATCTATCTCTTGATTTGGATTCCTTTTCTATGCACCAAGAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> GTTGTATCTATCTCTTGATTTGGATTCCTTTTCTATGCACCAAGAAATCC
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> GTTGTATCTATCTCTTGATTTGGATTCCTTTTCTATGCACCAAGAAATCC
CT0048892      --> GTTGTATCTATCTCTTGATTTGGATTCCTTTTCTATGCACCAAGAAATCC
CT0109239      --> GTTGTATCTATCTCTTGATTTGGATTCCTTTTCTATGCACCAAGAAATCC
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               651    -    701
RU05555        --> AGCACATCAGAATCAAATTCCAAGAGAGCCAACACTGACAAAGCAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................TCCAAGAGAGCCAACACTGACAAAGCAAAGAA
ET0016157      <-- ..................TCCAAGAGAGCCAACACTGACAAAGCAAAGAA
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> AGCACATCAGAATCAAATTCCAAGAGAGCCAACACTGACAAAGCAAAGAA
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> AGCACATCAGAATCAAATTCCAAGAGAGCCAACACTG.............
CT0048892      --> AGCACATCAGAATCAAATTCCAAGAGAGCCAACACTG.............
CT0109239      --> AGCACATCAGAATCAAATTCCAAGAGAGCCAACACTGACAAAGCAAAGAA
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               701    -    751
RU05555        --> CAGCAACAATCCAAATACACCCAACCAACCTCTCACTGCCATCTTCCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- CAGCAACAATCCAAATACACCCAACCAACCTCTCACTGCCATCTTCCTAT
ET0016157      <-- CAGCAACAATCCAAATACACCCAACCAACCTCTCACTGCCATCTTCCTAT
CT0137581      <-- ......................................CCATCTCCCTAT
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> CAGCAACAATCCAAATACACCCAACCAACATCTCACTGCCATCTCCCTAT
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> CAGCAACAATCCAAATACACCCAACCAACCTCTCACTGCCATCTT.....
CT0003782      --> ............................CCTCTCACTGCCATCTTCCTAT
CT0088180      --> ..................................................
ET0135867      --> ..................................................

               751    -    801
RU05555        --> TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
ET0016157      <-- TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
CT0137581      <-- TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> TCATGTGCTCACATTATCATTCTAATCAATGCTACTATCTGCAACAGTCG
CT0088180      --> .........................................CAACAGTCG
ET0135867      --> ..................................................

               801    -    851
RU05555        --> AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
ET0016157      <-- AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
CT0137581      <-- AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
CT0088180      --> AGAACCGGTCCATCCAAGCCACTGCTAGATAGAACCATTTATCATAACAA
ET0135867      --> ..................................................

               851    -    901
RU05555        --> TATGATCAAACCCACCAAATCTTCATTGCTTTCCCTATTCTGGCGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- TATGATCAAAC.......................................
ET0016157      <-- TATGATCAAAC.......................................
CT0137581      <-- TATGATCAAACCCACCAAATCTTCATTGCTTTCCCTATTCTGGCGAGTTT
ET0038283      <-- .........................TTGCTTTCCCTATTCTGGCGAGTTT
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TATGATCAAACCCACCAAATCTTCATTGCTTTCCCTATTCTGGCGAGTTT
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> TATGATCAAACCCACCAAAT..............................
CT0088180      --> TATGATCAAACCCACCAAATCTTCATTGCTTTCCCTATTCTGGCGAGTTT
ET0135867      --> ..................................................

               901    -    951
RU05555        --> CTCGGAATCTTTTATTTTTCGAATGGGTCCGTCACATTGCCCTTGGGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- CTCGGAATCTTTTAATTTTCGAATGGGTCCGTCACATTGCCCTTGGGGGT
ET0038283      <-- CTCGGAATCTTTTATTTTTCGAATGGGTCCGTCACATTGCCCTTGGGGGT
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> CTCGGAATCTTTTAATTTTCGAATGGGTCCGTCACATTGCCCTTGGGGGT
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> CTCGGAATCTTTTATTTTTCGAATGGGTCCGTCACATTGCCCTTGGGGGT
ET0135867      --> ..................................................

               951    -   1001
RU05555        --> CTCTAAAGCCTTATGATTCTTTAATCCCAAGCATGCAGTAACAAAAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- CTCTAAAGCCTTATGATTCTTTAATCCCAAGCATGCAGTAACAAAAGTTG
ET0038283      <-- CTCTAAAGCCTTATGATTCTTTAATCCCAAGCATGCAGTAACAAAAGTTG
CT0109683      <-- ....................................AGTAACAAAAGTTG
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> CTCTAAAGCCTTATGATTCTTTAATCCCAAGCATGCAGTAACAAAAGTTG
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> CTCTAAAGCCTTATGATTCTTTAATCCCAAGCATGCAGTAACAAAAGTTG
ET0135867      --> ..................................................

               1001   -   1051
RU05555        --> TTGCAAAACGTTTTACACATGCCGGCAAACAGTACAGCGCTTTCCATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- TCGCAAAACGTTTTACACATGCCGGCAAACAGTACAGCGCTTTCCAT...
ET0038283      <-- TTGCAAAACGTTTTACACATGCCGGCAAACAGTACAACGCTTTCCATATT
CT0109683      <-- TCGCAAAACGTTTTACACATGCCGGCAAACAGTACAGCGCTTTCCATATT
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> TCGCAAAACGTTTTACACATGCCGGCAAACAGT.................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> TTGCAAAACGTTTTACACATGCCGGCAAACAGTACAACGCTTTCCATATT
ET0135867      --> ..................................................

               1051   -   1101
RU05555        --> CTGGAGAACTTCTCGGATTCAGTTGTAAATATGAACTATGCATATAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- CTGGAGAACTTCTCGGATTCAGTTGTAAATATGAACTATGCATATAAACA
CT0109683      <-- CTGGAGAACTTCTCGGATTCAGTTGTAAATATGAACTATGCATATAAACA
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> .......................tgtttatatgcatagttCATATTTACA

               1101   -   1151
RU05555        --> TAAGCTTACCTAAGCTTCCAGCTGCTTTTTACACATTTCACCATTAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- TAAGCTTACCTAAGCTTCCAGCTGCTTTTTACAaaaaaaaa.........
CT0109683      <-- TAAGCTTACCTAAGCTTCCAGCTGCTTTTTACACATTTCACCATTAACTT
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> TAAGCTTACCTAAGCTTCCAGCTGCTTTTTACACATTTCACCATTAACTT

               1151   -   1201
RU05555        --> CACCAATTGCCAAAAGAACAAACTTGTTGTGCAGTTTGTTCTTTTGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- CACCAATTGCCAAAAGAA................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> CACCAATTGCCAAAAGAACAAACTTGTTGTGCAGTTTGTTCTTTTGGCAA

               1201   -   1251
RU05555        --> TTGGTGAAGTTAATGGTGAAATGTGTAAAAAGAACAAACTGCACAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> TTGGTGAAGTTAATGGTGAAATGTGTAAAAAGAACAAACTGCACAACAAG

               1251   -   1301
RU05555        --> TTCAAGAACTTTGCAAGAAAATTCATGCAAAGTTGAGTTCTGTTTATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ..................................................
ET0050427      <-- ..................................................
ET0051948      <-- ..................................................
CT0013623      <-- ..................................................
ET0015896      <-- ..................................................
ET0016157      <-- ..................................................
CT0137581      <-- ..................................................
ET0038283      <-- ..................................................
CT0109683      <-- ..................................................
CT0080479      --> ..................................................
ET0134150      --> ..................................................
ET0062835      --> ..................................................
ET0067733      --> ..................................................
RH59CF56       --> ..................................................
CT0098954      --> ..................................................
ET0001023      --> ..................................................
CT0031815      --> ..................................................
CT0048892      --> ..................................................
CT0109239      --> ..................................................
CT0003782      --> ..................................................
CT0088180      --> ..................................................
ET0135867      --> TTCAAGAACTTTGCAAGAAAATTCATGCAAAGTTGAGTTCTGTTTATCCG

               1301   -   1351
RU05555        --> TTTCAATGCCCTACCGGTCATGGTTCAGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110442      <-- ................................
ET0050427      <-- ................................
ET0051948      <-- ................................
CT0013623      <-- ................................
ET0015896      <-- ................................
ET0016157      <-- ................................
CT0137581      <-- ................................
ET0038283      <-- ................................
CT0109683      <-- ................................
CT0080479      --> ................................
ET0134150      --> ................................
ET0062835      --> ................................
ET0067733      --> ................................
RH59CF56       --> ................................
CT0098954      --> ................................
ET0001023      --> ................................
CT0031815      --> ................................
CT0048892      --> ................................
CT0109239      --> ................................
CT0003782      --> ................................
CT0088180      --> ................................
ET0135867      --> TTTCAATGCCCTACCGGTCATGGTTCAGTTTA