Rose Transcriptome Database

               69     -    119
RU05621        --> tCTGGGTCGATCTTTTTCGGTGGAAAGCCTTGCGTTTTTTACCTCCCGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> cCTGGGTCTATCTTTTTCGGTGGAAAGCCTTGCGTTTTTTACCTCCCGGG
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               119    -    169
RU05621        --> GTTTTTTGAGCTGCACCCATGTCTAAGCTCTTCGGATTCGCTGGTAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ........AGCTGCACCCATGTCTAAGCTCTTCGGATTCGCTGGTAGTGA
CT0107350      <-- ........................................CTGGTAGTGA
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> GTTTTTTGAGCTGCACCCATGTCTAAGCTCTTCGGATTCGCTGGTAGTGA
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               169    -    219
RU05621        --> TGATTTTTTCCCAGGGGGGTCAATATATGAAAACCCCAAAGAAGCAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- TGATTTTTTCCCAGCGGGGTCAATATATGAAAACCCCAAAGAAGCAGGCC
CT0107350      <-- TGATTTTTTCCCAGGGGGGTCAATATATGAAAACCCCAAAGAAGCAGGCC
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> TGATTTTTTCCCAGGGGGGTCAATATAT......................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               219    -    269
RU05621        --> TCTTTTTGTCTCTTGGTCGGCATGTGGATGTCTACTTTCCTCCTAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- TCTTTTTGTCTCTTGGTCGGCATGTGGATGTCTACTTTCCTCCTAGCAAG
CT0107350      <-- TCTTTTTGTCTCTTGGTCGGCATGTGGATGTCTACTTTCCTCCTAGCAAG
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               269    -    319
RU05621        --> AGGTCTCGCATCAGTGCTCCATTTGTTTTCAATCAAGAGAGTTTTGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- AGGTCTCGCATCAGTGCTCCATTTGTTTTCAATCAAGAGAGTTTTGAACA
CT0107350      <-- AGGTCTCGCATCAGTGCTCCATTTGTTTTCAATCAACAGAGTTTTGAACA
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               319    -    369
RU05621        --> GAAGAAGCAGGTGTCTATCAATGTTCTTCCAGAAGAATGTCTCTTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- GAAGAAGCAGGTGTCTATCAATGT..........................
CT0107350      <-- GAAGAAGCAGGTGTCTATCAATGTTCTTCCAGAAGAATGTCTCTTTGAGA
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ................................................GA
ET0138107      --> ...............................................gtA
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               369    -    419
RU05621        --> TCTTTAAACGGTTGCCTGGAGGTGAGGAAAGGAGTGCCTGTGCTTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- TCTTTAAACGGTTGCCTGGAGGTGAGG.......................
ET0059648      <-- ........CGGTTGCCTGGAGGTGAGGAAAGGAGTGCCTGTGCTTGTGTT
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> TCTTTAAACGGTTGCCTGGAGGTGAGGAAAGGAGTGCCTGTGCTTGTGTT
ET0138107      --> TCTTTAAACGGTTGCCTGGAGGTGAGGAAAGGAGTGCCTGTGCTTGTGTT
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               419    -    469
RU05621        --> TCCAAGCAGTGGCTTACTCTTTTGAGCAATATCCATAGAGATGAGTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- TCCAAGCAGTGGCTTACTCTTTTGAGCAATATCCATAGAGATGAGTTCTG
CT0097101      <-- .......................tAGCAATATCCATAGAGATGAGTTCTG
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> TCCAAGCAGTGGCTTACTCTTTTGAGCAATATCCATAGAGATGAGTTCTG
ET0138107      --> TCCAAGCAGTGGCTTACTCTTTTGAGCAATATCCATAGAGATGAGTTCTG
ET0009699      --> ....AGCAGTGGCTTACTCTTTTGAGCAATATCCATAGAGATGAGTTCTG
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               469    -    519
RU05621        --> TAACAAGAACACAAACCTA-TCTGTGAAGTCTCAGGATGAGATCACTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- TAACAAGAACACAAACCTA-TCTGTGAAGTCTCAGGATGAGATCACTGGA
CT0097101      <-- TAATAAGAACACAAACCTA-TCTGTGAAGTCTCAGGATGAGATCACTGGA
ET0079977      <-- .AACAAGAACACAAACCTAATCTGTGAAGTCTCAGGATGAGATCACTGGA
ET0022809      <-- ........................TGAAGTCTCAGGATGAGATCACTGGA
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> TAACAAGAACACAAACCTA-TTTGTGAAGTCTCAGGATGAGATCACTGGA
ET0138107      --> TAACAAGAACACAAACCTA-TTTGTGAAGTCTCAGGATGAGATCACTGGA
ET0009699      --> TAACAAGAACACAAACCTA-TCTGTGAAGTCTCAGGATGAGATCACTGGA
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               519    -    569
RU05621        --> GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
CT0097101      <-- GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTTTCCAGGA
ET0079977      <-- GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
ET0022809      <-- GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
ET0138107      --> GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATATCTTT-CCAGGA
ET0009699      --> GATGAGGCTGAAGACCAGGAGATTGAGAGTTGTGGATAT...........
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               569    -    619
RU05621        --> GCTTGGAAGGCAAGAAGGCAACAGATGTTAGACTTT-CTGCCATTGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- GCTTGGAAGGCAAGAAGGCAACA...........................
CT0097101      <-- GCTTGGAAGGCAAGAAGGCAACAGATGTTAGACTTT-CTGCCATTGCTGT
ET0079977      <-- GCTTGGAAGGCAAGAAGGCAACAGATGTTAGACTTTTCTGCCATTGCTGT
ET0022809      <-- GCTTGGAAGGCAAGAAGGCAACAGATGTTAGACTTT-CTGCCATTGCTGT
CT0047085      <-- ...............AGGCAACAGATGTTAGACTTT-CTGCCATTGCTGT
ET0015351      <-- .............................AGACTTT-CTGCCATTGCTGT
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> GCTTGGAAGGCAAGAAGGCAACAGATGTTA....................
ET0138107      --> GCTTGGAAGGCAAGA-GGCAACAGATGTT.....................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               619    -    669
RU05621        --> TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTGGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTG......
ET0079977      <-- TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTGGAAGCA
ET0022809      <-- TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTGGAAGCA
CT0047085      <-- TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTGGAAGCA
ET0015351      <-- TGGAACTGCCAGTCGAGGAGGATTGGGCAAGCTTATGATTCGTGGAAGCA
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               669    -    719
RU05621        --> ATTCTGCCCGTCCCGTGACAGACATTGGCCTTAAGGCGATTTCCCATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ATTC..............................................
ET0022809      <-- ATTCTGCCCGTCCCGTGACAGACATTGGCCTTAAGGCGATTTCCCATGGC
CT0047085      <-- ATTCTGCCCGTCCCGTGACAGACATTGGCCTTAAGGCGATTTCCCATGGC
ET0015351      <-- ATTCTGCCCGTCCCGTGACAAACATTGGCCTCAAGGCGATTTCCCATGGC
ET0022693      <-- ....TGCCCGTCCCGTGACAGACATTGGCCTTAAGGCGATTTCCCATGGC
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               719    -    769
RU05621        --> TGTCCTTCACTAAGGGTTCTATCTCTGTGGAACGTGTCGTCAGTTGGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- T.................................................
CT0047085      <-- TGTCCTTCACTAAGGGTTCTATCTCTGTGGAACGTGTCGTCAGTTGGGGA
ET0015351      <-- TGTCCTTCACTAAGGGTTCTATCTCTGTGGAACGTGTCATCAGTTGGGGA
ET0022693      <-- TGTCCTTCACTAAGGGTTCTATCTCTGTGGAACGTGTCGTCAGTTGGGGA
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               769    -    819
RU05621        --> TGAAGGCTTGTGCGAGATTGCAAAAAGGTGTCATCTGATAGAGAAGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- TGAAGGCTTGTGCGAGATTGCAAAAAGGTGTCATCTG.............
ET0015351      <-- TGAAGGCTTGTGCGAGATTGCAAAAAGGTGTCATCTGTTAGAGAAGCTTG
ET0022693      <-- TGAAGGCTTGTGCGAGATTGCAAAAAGGTGTCATCTGATAGAGAAGCTTG
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               819    -    869
RU05621        --> ACCTCTCCCTGTGTCCTGCAATATCTGATAAGGGTTTGGCTGCAATTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ACCTCTCCCT........................................
ET0022693      <-- ACCTCTCCCTGTGTCCTGCAATATCTGATAAGGGTTTGGCTGCAATTGCA
CT0034630      <-- .......................................CTGCAATTGCA
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               869    -    919
RU05621        --> AGGAGCTGTCCCAATTTGACCGACTTAACACTTGAGTCCTGTTCTAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- AGGAGCTGTCCCAATTTGACCGACTTAACACTTGAGTCCTGTT.......
CT0034630      <-- AGGAGCTGTCCCAATTTGACCGACTTAACACTTGAGTCCTGTTCTAACAT
ET0043363      <-- ..................ACCGATTTAACACTTGAGTCCTGTTCTAACAT
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               919    -    969
RU05621        --> TGGGAATGAAGGTCTGCAAGCTATTGGAAAGTGCTGCCCCAATCTGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- TGGGAATGAAGGTCTGCAAGCTATTGGAAAGTGCTGCCCCAATCTGAAAT
ET0043363      <-- TGGGAATGAAGGTCTGCAAGCTATTGGAAAGTGCTGCCCCAATCTGAAAT
ET0076601      <-- .GGGAATGAAGGTCTGCAAGCTATTGGAAAGTGCTGCCCCAATCTGAAAT
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               969    -   1019
RU05621        --> CTGTTTCAATCAAAAATTGCCCTCTTGTTGGGGATCAGGGAATTGCTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- CTGTTTCAATCAAAAATTGCCCTCTTGTTGGGGATCAGGGAATTGCTAGC
ET0043363      <-- CTGTTTCAATCAAAAATTGCCCTCTTGTTGGGGATCAGGGAATTGCTAGT
ET0076601      <-- CTGTTTCAATCAAAAATTGCCCTCTTGTTGGGGATCAGGGAATTGCTAGT
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1019   -   1069
RU05621        --> TTGGTATCTTCTACCTCTGATGTCCTGGAAAAGGTGAAGCTTCAGACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- TTGGTATCTTCTACCTCTG...............................
ET0043363      <-- TTGGTATCTTCTACCTCTGATGTCCTGGAAAAGGTGAAGCTTCAGACATT
ET0076601      <-- TTGGTATCTTCTACCTCTGATGTCCTGGAAAAGGTGAAGCTTCAGACATT
ET0077106      <-- .............ccgggaaaaaaaaaaaataaGTGAAGCTTCAGACATT
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1069   -   1119
RU05621        --> GACCATAACTGATGTGTCTCTTGCTGTTATTGGACACTATGGCAAGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- GACCATAACTGATGTGTCTCTTGCTGTCATTGGACACTATGGTAAGGCTG
ET0076601      <-- GACCATAACTGATGTGTCTCTTGCTGTCATTGGACACTATGGTAAGGCTG
ET0077106      <-- GACCATAACTGATGTGTCTCTTGCTGTTATTGGACACTATGGCAAGGCTG
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1119   -   1169
RU05621        --> TTACCGATCTTGTCCTTACCAATCTCCCCAATGTGTGCGAGAGGGGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- TTA...............................................
ET0076601      <-- TTACCGATCTTGTCCTTACCAATCTCCCCAATGTGTG.............
ET0077106      <-- TTACCGATCTTGTCCTTACCAATCTCCCCAATGTGTGTGAGAGGGGATTC
ET0019251      <-- .................ACCAATCTCCCCAATGTGTGCGAGAGGGGATTC
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..gCCGATCTTGTCCTTACCAATCTCCCCAATGTGTGCGAGAGGGGATTC
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1169   -   1219
RU05621        --> TGGGTCATGGGCAATGGTCATGGGCTGCAGAAGTTGAAGTCCTTTACTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- TGGGTCATGGGCAATGGTCATGGGCTGCAGAAGTTGAAGTCCTTTACTGT
ET0019251      <-- TGGGTCATGGGCAATGGTCATGGGCTGCAGAAGTTGAAGTCCTTTACTGT
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> TGGGTCATGGGCAATGGTCATGGGCTGCAGAAGTTGAAGTCCTTTACTGT
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1219   -   1269
RU05621        --> TACATCCTGTCAAGGTGCAACAGACACTGGACTTGAAGCAGTAGCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- TACATCCTGTCAAGGTGCAACAGACACTGGACTTGAAGCAGTAGCAAAAG
ET0019251      <-- TACATCCTGTCAAGGTGCAACAGACACTGGACTTGAAGCAGTAGCAAAAG
ET0028710      <-- .....................AGACACTGGACTTGAAGCAGTAGCAAAAG
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> TACATCCTGTCAAGGTGCAACAGACACTGGACTTGAAGCAGTAGCAAAAG
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1269   -   1319
RU05621        --> GTTGCCCAAATTTGAAACAGTTCTGCCTGCGCAAGTGTCTATACATATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- GTTtgtct..........................................
ET0019251      <-- GTTGCCCAAATTTGAAACAGTTCTGCCTGCGCAAGTGTCTATACATATCT
ET0028710      <-- GTTGCCCAAATTTGAAACAGTTCTGCCTGCGCAAGTGTCTATACATATCT
ET0081241      <-- ....................TTCTGCCTGCGCAAGTGTCTATACATATCT
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> GTTGCCCAAATTTGAAACAGTTCTGCCTGCGCAAGTGTCTATACATATCT
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1319   -   1369
RU05621        --> GACAGTGGGTTGGTATCTTTTTGCAAAGCAGCAGGATCTCTTGAGAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- GACAGTGGGTTGGTAT..................................
ET0028710      <-- GACAGTGGGTTGGTATCTTTTTGCAAAGCAGCAGGATCTCTTGAGAACCT
ET0081241      <-- GACAGTGGGTTGGTATCTTTTTGCAAAGCAGCAGGATCTCTTGAGAACCT
ET0079437      <-- .............................................agCCT
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> GACAGTGGGTTGGTATCTTTTTGCAAAGCAGCAGG...............
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1369   -   1419
RU05621        --> TCATTTGGAGGAGTGCCACAGGATCTCCCAATATGGATTTTT-GGTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- TCATTTGGAGGAGTGCCACAGGATCACCCAATATGGATTTTTTGGTGTTC
ET0081241      <-- TCATTTGGAGGAGTGCCACAGGATCACCCAATATGGATTTTT-GGTGTTC
ET0079437      <-- TCATT-GGAGGAGTGCCACAGGATCTCCCAATATGGATTTTT-GGTGTTC
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1419   -   1469
RU05621        --> TTTCAAACAGTGGTGCAAAGTTGAAGGCTCTAGCTTTTGTTTACTGCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- TTTCAAACAGTGGTGCAAAGTTGAAGGCTCTAGCTTTTGT..........
ET0081241      <-- TTTCAAACAGTGGTGCAAAGTTGAAGGCTCTAGCTTTTGTTTACTGCCTG
ET0079437      <-- TTTCAAACAGTGGTGCAAAGTTGAAGGCTCTAGCTTTTGTTTACTGCCTG
ET0011161      <-- .....AACAGTGGTGCAAAGTTGAAGGCTCTAGCTTTTGTTTACTGCCTG
ET0099531      <-- ................AAAGTTGAAGGCTCTAGCTTTTGTTTACTGCCTG
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ................................................TG
ET0024894      --> ................................................TG
ET0029756      --> ................................................TG
ET0036631      --> ................................................TG
ET0052107      --> ................................................TG
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1469   -   1519
RU05621        --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0079437      <-- GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCCCCATGCAAATC
ET0011161      <-- GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCCCCATGCAAATC
ET0099531      <-- GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0024894      --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0029756      --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0036631      --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0052107      --> GGACTTAAAGACCTGAACTTGGGATTGCCTGTGGTGTCTCCATGCGAATC
ET0109269      --> ..........................................TGCGAATC
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1519   -   1569
RU05621        --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- TCTTCG............................................
ET0079437      <-- TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0011161      <-- TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGG................
ET0099531      <-- TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0095021      <-- ..................CCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0024894      --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0029756      --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0036631      --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0052107      --> TCTTCGCTCACTGTCCATCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0109269      --> TCTTCGCTCACTGTCCGTCCGTAACTGCCCTGGGTTTGGAAATTCTGGGC
ET0083756      --> ...........................CCCTGGGTTTGGAAATTCTGGGC
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1569   -   1619
RU05621        --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATATCG.......
ET0011161      <-- ..................................................
ET0099531      <-- TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGA......
ET0095021      <-- TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0024894      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0029756      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0036631      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0052107      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0109269      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0083756      --> TGGCGGTTTTGGGT-CAACTCTGCCCTCAACTGCAGCATATCGACTTCAG
ET0067673      --> ......TTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0069222      --> ......TTTTGGGT-CAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0100875      --> .....tTTTTGGGTTCAACTCTGCCCTCAACTGCAGCATGTCGACTTCAG
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1619   -   1669
RU05621        --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-TAGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-TAGGAGC
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-GAGGAGC
ET0024894      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-GAGGAGC
ET0029756      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-GAGGAGC
ET0036631      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-GAGGAGC
ET0052107      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCTGGAGGAGC
ET0109269      --> TGGGCTTGAAGG......................................
ET0083756      --> TGGGCTTGAAGGAATGACTGATGCTGGATTTCTCTCACTGCT-TAGAAGC
ET0067673      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-TAGGAGC
ET0069222      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-TAGGAGC
ET0100875      --> TGGGCTTGAAGGAATGACCGATGCTGGATTTCTCTCACTGCT-TAGGAGC
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1669   -   1719
RU05621        --> ACTGAGGCTGGTCTGGTAAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ACTGAGGCTGGTCTGGTAAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
CT0044486      <-- ............CTGGTGAAGGTTAAATCTTAGTGGTTGTGTGAATCTGA
ET0026094      <-- ............CTGGTTAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ACTGAGGCTGGTCTGGTTAAGGTTAA-TCTTAGTGGTTG...........
ET0024894      --> ACTGAGGCTGGTCTGGTTAAGGTTAA-TCTTAGTGGTTG...........
ET0029756      --> ACTGAGGCTGGTCTGGTTAAGGTTAA-TCTTAGTGGTTG...........
ET0036631      --> ACTGAGGCTGGTCTGGTTAAG-TTAA-TCTTAGTGGTTG...........
ET0052107      --> ACTGAGGCTGGTC.....................................
ET0109269      --> ..................................................
ET0083756      --> ACTGAGGCTGGTCTGGTGAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
ET0067673      --> ACTGAGGCTGGTCTGGTAAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
ET0069222      --> ACTGAGGCTGGTCTGGTAAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
ET0100875      --> ACTGAGGCTGGTCTGGTAAAGGTTAA-TCTTAGTGGTTGTGTGAATCTGA
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1719   -   1769
RU05621        --> CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- CAGACAAAGCGGTGTCCACCATGGCT........................
CT0044486      <-- CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
ET0026094      <-- CAGACAAAGCGGTGTTCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTT....
ET0067673      --> CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
ET0069222      --> CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
ET0100875      --> CAGACAAAGCGGTGTCCACCATGGCTGAGCTTCATGGTTGGACTTTGGAA
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1769   -   1819
RU05621        --> GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCGATTCAGGCTTGGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCGATTCAGGCTTGGTAGC
ET0026094      <-- GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCGATTCAGGC........
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCG................
ET0069222      --> GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCGta..............
ET0100875      --> GTGGTGAATCTTGAAGGTTGTAGAATGATCAGCG................
ET0097588      --> .....ctttgtaaggtttgtTAGAATGATCAGCGATTCAGGCTTGGTAGC
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1819   -   1869
RU05621        --> AATTGGAGAGAACTGCCCATTGCTTAGTGATCTTGATATCTCAAGGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- AATTGGAGAGAACTGCCCATTGCTTAGTGATCTTGATATCTCAAGGTGTG
ET0026094      <-- ..................................................
ET0005853      <-- ..................ATTGCTTAGTGATCTTGATATCTCAAGGTGTG
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> AATTGGAGAGAACTGCCCATTGCTTACTGATCTTGATATCTCAAGGTGTG
ET0066749      --> ...........ACTGCCCATTGCTTAGTGATCTTGATATCTCAAGGTGTG
ET0018021      --> .......................TTAGTGATCTTGATATCTCAAGGTGTG
CT0017621      --> .........................AGTGATCTTGATATCTCAAGGTGTG
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1869   -   1919
RU05621        --> CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTG..............
ET0026094      <-- ..................................................
ET0005853      <-- CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0085482      <-- ....catTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0048510      <-- ..............GGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0066749      --> CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0018021      --> CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
CT0017621      --> CAATCACTGATTTTGGAATTGCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0120607      --> ....................GCATCCCTGGCCCTTGCAGACCAGCTAAAT
ET0058468      --> .................................................a
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1919   -   1969
RU05621        --> CTTCAGATCCTCTCTGTGTCCGGCTGCTCTTATGTATCAGACAAGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- CTTCAGATCCTCTCTGTGTCCGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0085482      <-- CTTCAGATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0048510      <-- CTTCAGATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
CT0017353      <-- .....GATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0058523      <-- ..............................TATGTATCAGACAAGAGTTT
ET0048970      <-- ................................................TT
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> CTTCAGATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0066749      --> CTTCAGATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0018021      --> CTTCAGATCCTCTCTGTGTCCGGCTGCTCTTATGTATCAGACAAGAGTTT
CT0017621      --> CTTCAGATCCTCTCTGTGTCCGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0120607      --> CTTCAGATCCTCTCTGTGTCGGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0058468      --> agaatacctactaCTGTGTCCGGCTGCTCTTATGTATCAGACAAGAGTTT
ET0047340      --> .....................GGCTGCTCTTATGTATCAGACAAGAGTTT
CT0081340      --> .........................................CAAGAGTTT
CT0089909      --> .........................................CAAGAGTTT
CT0092625      --> .........................................CAAGAGTTT
CT0098327      --> .........................................CAAGAGTTT
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               1969   -   2019
RU05621        --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0048510      <-- GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATGTT
CT0017353      <-- GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATGTT
ET0058523      <-- GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0048970      <-- GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0058954      <-- ............................ACACTTCTAGG-TTTGAATGTT
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> GTCTGCCTTAGGTAAAAA-T-GGGTGAGACta..................
ET0066749      --> GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATGTT
ET0018021      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
CT0017621      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0120607      --> GTCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0058468      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
ET0047340      --> GCCTGCCTT-GGTAAAAAATGGGGTGAGACACTTCTAGG-TTT.......
CT0081340      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
CT0089909      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
CT0092625      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
CT0098327      --> GCCTGCCTT-GGTAAAAA-T-GGGTGAGACACTTCTAGG-TTTGAATCTT
CT0090846      --> .............................CACTTCTAGGGTTTGAATGTT
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2019   -   2069
RU05621        --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- CAGCACTGCAAGGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0048510      <-- CAGCACTGCAATGCCATCAGCAGCAGCCACCGTTGAac............
CT0017353      <-- CAGCACTGCAAGGCCATCAagcagaat.......................
ET0058523      <-- CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0048970      <-- CAGCACTGCAAGGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0058954      <-- CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> CAGCACTGCAATGCCATCAGCAGCAG........................
ET0018021      --> CAGCACTGCAATGCCAT.................................
CT0017621      --> CAGCACT...........................................
ET0120607      --> CAGCACTGCAAGGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0058468      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
ET0047340      --> ..................................................
CT0081340      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
CT0089909      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
CT0092625      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
CT0098327      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
CT0090846      --> CAGCACTGCAATGCCATCAGCAGCAGC-ACCGTTGACCGTCTTGTGGAGC
CT0033241      --> .....................................CGTCTTGTGGAGC
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2069   -   2119
RU05621        --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- A.................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
ET0048970      <-- AGCTATGGCGTTGTGATATCCTTTCCTAGACTTATGAATCGCCGCCACAC
ET0058954      <-- AGTTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCCGCCACAC
ET0115704      <-- ...TATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
ET0100555      <-- .....TGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTTATGAATCGCCg......
ET0058468      --> AGCTATGGCGTTGTGATATCCTTTCCTAGA....................
ET0047340      --> ..................................................
CT0081340      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
CT0089909      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
CT0092625      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
CT0098327      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCC---ACAC
CT0090846      --> AGTTATGGCGTTGTGATATCCTTTCCTAGACTCATGAGTCGCCGCCACAC
CT0033241      --> AGCTATGGCGTTGTGATATCCTTTCCTAGACTTATGAATCGCCGCCACAC
ET0066608      --> ..............GATATCCTTTCCTAGACTTATGAGTCGCCGCCACAC
ET0091690      --> ..............GATATCCTTTCCTAGACTTATGAGTCGCCGCCACAC
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2119   -   2169
RU05621        --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- CAGAG.............................................
ET0048970      <-- CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCA.....
ET0058954      <-- CAGAGGAATAGTTCTCTCACTGGTCAAAAGTCCAGAATTTAGTCAGTTTT
ET0115704      <-- CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
ET0100555      <-- CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
ET0039777      <-- .............................taCCAGAATTTAGTCAGCTTT
ET0049721      <-- ............................taaCCAGAATTTAGTCAGCTTT
ET0009754      <-- ...............................................TTT
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
CT0089909      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
CT0092625      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
CT0098327      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
CT0090846      --> CAGAGGAATAGTTCTCTCACTGGTCAAAAGTCCAGAATTTAGTCAGTTTT
CT0033241      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
ET0066608      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
ET0091690      --> CAGAGGAATAGTTCTCGCACTAGTCAAAAGTCCAGAATTTAGTCAGCTTT
ET0050321      --> ...............................CCAGAATTTAGTCAGCTTT
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2169   -   2219
RU05621        --> TTTC-AAGTATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0115704      <-- TTTC-AAGTATCTGCAGCTTGCG...........................
ET0100555      <-- TTTC-AAGTATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0039777      <-- TTTC-AAGTATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0049721      <-- TTTCTAAGTATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0009754      <-- TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> TTTC-AAGTATCTGCAGCTTGCGTtag.......................
CT0089909      --> TTTC-AAGTATCTGCAGCTTGCGTttagg.....................
CT0092625      --> TTTC-AAGTATCTGCAGCTTGCGTtag.......................
CT0098327      --> TTTC-AAGTATCTGCAGCTTGCGTttag......................
CT0090846      --> TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
CT0033241      --> TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0066608      --> TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0091690      --> TTTC-AAGTATCTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0050321      --> TTTC-AAGTATCTGCGGCTTGTGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0016139      --> ........TATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0018875      --> ........TATCTGCAGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
CT0006646      --> ...........CTGCGGCTTGCGTAGTTTTTGGGTCCATCAGCTATGGGT
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2219   -   2269
RU05621        --> CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- CTTTAGAGT-GTCCC...................................
ET0115704      <-- ..................................................
ET0100555      <-- CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
ET0039777      <-- CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
ET0049721      <-- CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
ET0009754      <-- CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATATGCTC
ET0021321      <-- ...................ccgTTTTTCCAGGGGGAATGGCCATGTGC-C
ET0050498      <-- ............................agGGGGGAATGGCCATGTGC-C
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> CTTTAGAGT-GTCCCGGTT...............................
CT0033241      --> CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATG...........
ET0066608      --> CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATATGCTC
ET0091690      --> CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATATGCTC
ET0050321      --> CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATATGCTC
ET0016139      --> CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
ET0018875      --> CTTTAGAGTTGTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATGTGCTC
CT0006646      --> CTTTAGAGT-GTCCCGGTTGCCTTTTTCCAGGGGGAATGGCCATATGCTC
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2269   -   2319
RU05621        --> CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0039777      <-- CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0049721      <-- CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0009754      <-- CTTTTTTG-CAGGTTTCCTATCATCGGAGATCTGTTCCCAGAGTTATGGC
ET0021321      <-- CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0050498      <-- CTTTTTTGTCAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> CTTTTTTG-CAGGTTTCCTATCATCAGAGATCTGTTCCCAGAGTTATGGC
ET0091690      --> CTTTTTTG-CAGGTTTCCTATCATCAGAGATCTGTTCCCAGAGTTATGGC
ET0050321      --> CTTTTTTG-CAGGTTTCCTATCATCAGAGATCTGTTCCCAGAGTTATGGC
ET0016139      --> CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
ET0018875      --> CTTTTTTG-CAGGTTTCCTATCATTGGAGGTCTGTTCCCAGAGTTATGGC
CT0006646      --> CTTTTTTG-CAGGTTTCCTATCATCAGAGATCTGTTCCCAGAGTTATGGC
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2319   -   2369
RU05621        --> TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- TATTGGC-AAAGGGGT..................................
ET0039777      <-- TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0049721      <-- TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0009754      <-- TATTGGC-AAAGGGGTT.................................
ET0021321      <-- TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0050498      <-- TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0041870      <-- ..........................CTTGTC-ATTTATA-TCCCTGAGA
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> TATTGGC-AAAGGGGTTGTC..............................
ET0091690      --> TATTGGC-AAAGGGG...................................
ET0050321      --> TATTGGCGAAAGGGGTTGTCACTTCTCTTGTCTATTTATACTCCCTG...
ET0016139      --> TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0018875      --> TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
CT0006646      --> TATTGGC-AAAGGGGTTGTCACTTCTCTTGTC-ATTTAT...........
ET0060828      --> ........AAAGGGGTTGTCACTTCTCTTGTC-ATTTATA-TCCCTGAGA
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2369   -   2419
RU05621        --> ATACTGCTACCGGGCTCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ATACTGCTACCGGGCCCTTGATCTAGGCTATCTTTACCGTTTCCAG....
ET0049721      <-- ATACTGCTACCGGGCCCTTGATCTAGGCTATCTTTACCGTTTCCAG....
ET0009754      <-- ..................................................
ET0021321      <-- ATACTGCTACCGGGCCCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
ET0050498      <-- ATACTGCTACCGGGCCCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
ET0041870      <-- ATACTGCTACCGGGCTCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
ET0029484      <-- ..................................................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ATACTGCTACCGGG....................................
ET0018875      --> ATACTGCTACCGGG....................................
CT0006646      --> ..................................................
ET0060828      --> ATACTGCTACCGGGCTCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
ET0126842      --> ...CTGCTACCGGGCTCTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
CT0137718      --> ................CTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
CT0138151      --> ................CTTGATCTAGGCTATCTTTACCGTTTCCAGTAGT
ET0130916      --> ...........................CTATCTTTACCGTTTCCAGTAGT
ET0039015      --> ................................................GT
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2419   -   2469
RU05621        --> CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- CCTGGTTTTATAGTGCTAGGTGTAGGAAGGAGCCCATCTTTTTGCTTGGT
ET0050498      <-- CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0041870      <-- CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0029484      <-- ........................................TTTGCTTGGT
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0126842      --> CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
CT0137718      --> CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
CT0138151      --> CCTGGTTTTATAGTGCTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0130916      --> CCTGGTTTTATAGTGCTAGTTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0039015      --> CCTGGTTTTATAGTGCTAGTTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
CT0086118      --> ...............CTAGGTGTAGGA-GGAGCCCATCTTTTTGCTTGGT
ET0059586      --> .......................AGGA-GGAGCCCATCTTTTTGCTTGGT
ET0050439      --> ...........................................GCTTGGT
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2469   -   2519
RU05621        --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATA..........
ET0050498      <-- TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATA..........
ET0041870      <-- TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0029484      <-- TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> TGTCTAATGCTTGGA...................................
ET0126842      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
CT0137718      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
CT0138151      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0130916      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0039015      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
CT0086118      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0059586      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0050439      --> TGTCTAATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0036708      --> .....AATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0049750      --> .....AATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0054751      --> .....AATGCTTGGACCAAGCACTTTT-AGGCTTCCTATATCTAGTTCTA
ET0049824      --> .aaattgtctTTGGACCAAGCACTTTTTAGGCTTCCTATATCTAGTTCTA
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2519   -   2569
RU05621        --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0029484      <-- AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
CT0137718      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
CT0138151      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0130916      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0039015      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
CT0086118      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTTTCTTTAA
ET0059586      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCG...................
ET0050439      --> AGTCTGTCATTTTTTCATTTTTACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0036708      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0049750      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0054751      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0049824      --> AGTCTGTCATTTTT-CATTTT-ACCGAGTCGGTCACGTTTTTT-CTTTAA
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2569   -   2619
RU05621        --> CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGAGGGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGTGGGTGGt
ET0029484      <-- CTTGCATTCCACAacgtagaataggttagggt..................
ET0018749      <-- ..................................................
ET0148262      <-- ..................................................
CT0110721      <-- ..................................................
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGAGGGTGGG
CT0137718      --> CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGAGGGTGGG
CT0138151      --> CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGAGGGTGGG
ET0130916      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0039015      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
CT0086118      --> CTTGCATTCCACACGTGATGGTTGGGTGTTTGTTTACCTCAGAGGGTGGG
ET0059586      --> ..................................................
ET0050439      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0036708      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0049750      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0054751      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0049824      --> CTTGCATTCCACACGTGATGGTTGGGTCTTTGTTTACCTCAGAGGGTGGG
ET0141432      --> ..................................................
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2619   -   2669
RU05621        --> TTAGAGTTCAGTAGTCATCCAGAGTCTTGTATT--G--T-GCTTTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................  Ethylene
CT0107350      <-- ..................................................  Control
ET0059648      <-- ..................................................  Ethylene
CT0097101      <-- ..................................................  Control
ET0079977      <-- ..................................................  Ethylene
ET0022809      <-- ..................................................  Ethylene
CT0047085      <-- ..................................................  Control
ET0015351      <-- ..................................................  Ethylene
ET0022693      <-- ..................................................  Ethylene
CT0034630      <-- ..................................................  Control
ET0043363      <-- ..................................................  Ethylene
ET0076601      <-- ..................................................  Ethylene
ET0077106      <-- ..................................................  Ethylene
ET0019251      <-- ..................................................  Ethylene
ET0028710      <-- ..................................................  Ethylene
ET0081241      <-- ..................................................  Ethylene
ET0079437      <-- ..................................................  Ethylene
ET0011161      <-- ..................................................  Ethylene
ET0099531      <-- ..................................................  Ethylene
ET0095021      <-- ..................................................  Ethylene
CT0044486      <-- ..................................................  Control
ET0026094      <-- ..................................................  Ethylene
ET0005853      <-- ..................................................  Ethylene
ET0085482      <-- ..................................................  Ethylene
ET0048510      <-- ..................................................  Ethylene
CT0017353      <-- ..................................................  Control
ET0058523      <-- ..................................................  Ethylene
ET0048970      <-- ..................................................  Ethylene
ET0058954      <-- ..................................................  Ethylene
ET0115704      <-- ..................................................  Ethylene
ET0100555      <-- ..................................................  Ethylene
ET0039777      <-- ..................................................  Ethylene
ET0049721      <-- ..................................................  Ethylene
ET0009754      <-- ..................................................  Ethylene
ET0021321      <-- ..................................................  Ethylene
ET0050498      <-- ..................................................  Ethylene
ET0041870      <-- tg................................................  Ethylene
ET0029484      <-- ..................................................  Ethylene
ET0018749      <-- ............................tgtatttggtT-GCTTTTT--G  Ethylene
ET0148262      <-- ............................tgtatttggtT-GCTTTTT--G  Ethylene
CT0110721      <-- ..................................................  Control
ET0109649      <-- ..................................................  Ethylene
ET0003290      <-- ..................................................  Ethylene
ET0140946      <-- ..................................................  Ethylene
CT0015428      <-- ..................................................  Control
CT0076861      <-- ..................................................  Control
ET0051276      --> ..................................................  Ethylene
ET0139720      --> ..................................................  Ethylene
ET0138107      --> ..................................................  Ethylene
ET0009699      --> ..................................................  Ethylene
ET0024179      --> ..................................................  Ethylene
ET0024656      --> ..................................................  Ethylene
ET0024894      --> ..................................................  Ethylene
ET0029756      --> ..................................................  Ethylene
ET0036631      --> ..................................................  Ethylene
ET0052107      --> ..................................................  Ethylene
ET0109269      --> ..................................................  Ethylene
ET0083756      --> ..................................................  Ethylene
ET0067673      --> ..................................................  Ethylene
ET0069222      --> ..................................................  Ethylene
ET0100875      --> ..................................................  Ethylene
ET0097588      --> ..................................................  Ethylene
ET0066749      --> ..................................................  Ethylene
ET0018021      --> ..................................................  Ethylene
CT0017621      --> ..................................................  Control
ET0120607      --> ..................................................  Ethylene
ET0058468      --> ..................................................  Ethylene
ET0047340      --> ..................................................  Ethylene
CT0081340      --> ..................................................  Control
CT0089909      --> ..................................................  Control
CT0092625      --> ..................................................  Control
CT0098327      --> ..................................................  Control
CT0090846      --> ..................................................  Control
CT0033241      --> ..................................................  Control
ET0066608      --> ..................................................  Ethylene
ET0091690      --> ..................................................  Ethylene
ET0050321      --> ..................................................  Ethylene
ET0016139      --> ..................................................  Ethylene
ET0018875      --> ..................................................  Ethylene
CT0006646      --> ..................................................  Control
ET0060828      --> ..................................................  Ethylene
ET0126842      --> TTAGAGTTCAGTAGTCATCCAGAGT.........................  Ethylene
CT0137718      --> TTAGAGTTCAGTAGTCATCCAGAGTCTTGTATT--G--T-GCTTTTTGT-  Control
CT0138151      --> TTAGAGTTCAGTAGTCATCCAGAGTCTTGTATT--GGTT-GCTTTTTGTT  Control
ET0130916      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTtggttgctttttgcagt  Ethylene
ET0039015      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
CT0086118      --> TTAGAGTTCAGT......................................  Control
ET0059586      --> ..................................................  Ethylene
ET0050439      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
ET0036708      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
ET0049750      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
ET0054751      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
ET0049824      --> TTAGAGTTCAGTAGTCATCCAGAGTCCTGTATTTGG--TTGCTTTTTG--  Ethylene
ET0141432      --> ..................................................  Ethylene
CT0008018      --> ..................................................  Control
ET0030660      --> ..................................................  Ethylene
ET0035979      --> ..................................................  Ethylene
ET0038602      --> ..................................................  Ethylene
ET0141558      --> ..................................................  Ethylene

               2669   -   2719
RU05621        --> CAGTCTACATTTTTTGTTAAGCCTTGTGGTTGGGGGTCGGATTGGCCTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- CAGTCTACATTTTTT--GAAGCCTTGTGGTTGGGG--GGCATTGGCCTT-
ET0148262      <-- CAGTCTACATTTTTT--GAAGCCTTGTGGTTGGGGG-CATTGGCCTTGG-
CT0110721      <-- ...........TTTTTTGAAGCCTTGTGGTTGGGGG-CATTGGCCTTGG-
ET0109649      <-- ..................................................
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> CAGTCTACATTTTTg...................................
CT0138151      --> CAGTCTACATTTTTTGTTAAGCCTTGTGGTTGGGGGTCGGATTGGCCTT-
ET0130916      --> cta...............................................
ET0039015      --> CAGTCTACATTTTTTG--AAGCCTTGT.......................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> CAGTCTACATTTTTTG--AAGCCTTGTGGTTGGGGG-C--ATTGGCCTT-
ET0036708      --> CAGTCTACATTTTTTG--AAGCCTTGTGGTTGGGGG-C--ATTGGCCTT-
ET0049750      --> CAGTCTACATTTTTTG--AAGCCTTGTGGTTGGGGG-C--ATTGGCCTT-
ET0054751      --> CAGTCTACATTTTTTG--AAGCCTTGTGGTTGGGGG-C--ATTGGCCTT-
ET0049824      --> CAGTCTACATTTTTT-TGAAGCCTTGTGGTTGGGGG-C--ATTGGCCTT-
ET0141432      --> ...........................................GGCCTTT
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2719   -   2769
RU05621        --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTCCTTTTT-GGAAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTCCTTTTT-GGAAGGAT
ET0148262      <-- CAGCAGTAAGTCTGCCTCGACAATCCTTTGT-CCTTTTTGG-AAGGATTG
CT0110721      <-- CAGCAGTAAGTCTGCCTCGACAATCCTTTGT-CCTTTTTGG-AAGGATTG
ET0109649      <-- ...........GTCTGCCTCGACAATCCTTT-GTCCTTTTT-GGAAGGAT
ET0003290      <-- ..................................................
ET0140946      <-- ..................................................
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> GGtc..............................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> GGCAGCAGTAAGTCTG..................................
ET0036708      --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTtc..............
ET0049750      --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTtc..............
ET0054751      --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTtccg............
ET0049824      --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTT-GTtc..............
ET0141432      --> GGCAGCAGTAAGTCTGCCTCGACAATCCTTTTGTCCTTTTTTGGAAGGAT
CT0008018      --> ..................................................
ET0030660      --> ..................................................
ET0035979      --> ..................................................
ET0038602      --> ..................................................
ET0141558      --> ..................................................

               2769   -   2819
RU05621        --> TGTTTTTTTTACC-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- TGTTTTTTTTACCTAAGCCCCCGTTTTTTCAGGCTTCATTGTTCTTGGAC
ET0148262      <-- TTTTTTTTACCAA-GCCCCCGTTTTTCA-GGCTTCATTGTTCTTGGACTG
CT0110721      <-- TTTTTTTTACCAA-GCCCCTGTTTTTCA-GGCTTCATTGTTCTTGGACTG
ET0109649      <-- TGTTTTTTT-ACC-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
ET0003290      <-- ...............................GGCTTCATTGTTCTTGGAC
ET0140946      <-- ......................................TTGTTCTTGGAC
CT0015428      <-- ..................................................
CT0076861      <-- ..................................................
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> TGTTTTTTTTACC-AAGCCCCTGTTTTTTCAGGCTTCATTGTTCTTGGAC
CT0008018      --> .tTTTTTTTTACC-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
ET0030660      --> ............C-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
ET0035979      --> ............C-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
ET0038602      --> ............C-AAGCCCCTGTTTTT-CAGGCTTCATTGTTCTTGGAC
ET0141558      --> .....................TGTTTTT-CAGGCTTCATTGTTCTTGGAC

               2819   -   2869
RU05621        --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTGCCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTATCTGCCCTCT
ET0148262      <-- TACTCTGCAACTTCTTAAGTATGTAATGAACTCT-GTATCTGCCCTCTGT
CT0110721      <-- TACTCTGCAACTTCGTAAGTATGTAATGAACTCT-GTCTCTGCCCTCTGT
ET0109649      <-- TGTACTCTGCAACTTCGTAAGTATGTAATGAACT-CTGTCTCTGCCCTCT
ET0003290      <-- TGTACTCTGCAACTTCGTAAGTATGTAATGAACT-CTGTCTCTGCCCTCT
ET0140946      <-- TGTACTCTGCAACTTCTTAAGTATGTAATGAACTACTGTCTac.......
CT0015428      <-- .............................tatgaaCTGTATCTGCCCTCT
CT0076861      <-- .............................tatgaaCTGTATCTGCCCTCT
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTACCCTCT
CT0008018      --> TGTACTCTGCAACTTCGTAAGTATGTAATGAACT-CTGTCTCTGCCCTCT
ET0030660      --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTACCCTCT
ET0035979      --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTACCCTCT
ET0038602      --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTACCCTCT
ET0141558      --> TGTACTCTGCAACTTCTTAAGTATGTAATGAACT-CTGTCTCTACCCTCT

               2869   -   2919
RU05621        --> GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTG-TTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0035342      <-- ..................................................
CT0107350      <-- ..................................................
ET0059648      <-- ..................................................
CT0097101      <-- ..................................................
ET0079977      <-- ..................................................
ET0022809      <-- ..................................................
CT0047085      <-- ..................................................
ET0015351      <-- ..................................................
ET0022693      <-- ..................................................
CT0034630      <-- ..................................................
ET0043363      <-- ..................................................
ET0076601      <-- ..................................................
ET0077106      <-- ..................................................
ET0019251      <-- ..................................................
ET0028710      <-- ..................................................
ET0081241      <-- ..................................................
ET0079437      <-- ..................................................
ET0011161      <-- ..................................................
ET0099531      <-- ..................................................
ET0095021      <-- ..................................................
CT0044486      <-- ..................................................
ET0026094      <-- ..................................................
ET0005853      <-- ..................................................
ET0085482      <-- ..................................................
ET0048510      <-- ..................................................
CT0017353      <-- ..................................................
ET0058523      <-- ..................................................
ET0048970      <-- ..................................................
ET0058954      <-- ..................................................
ET0115704      <-- ..................................................
ET0100555      <-- ..................................................
ET0039777      <-- ..................................................
ET0049721      <-- ..................................................
ET0009754      <-- ..................................................
ET0021321      <-- ..................................................
ET0050498      <-- ..................................................
ET0041870      <-- ..................................................
ET0029484      <-- ..................................................
ET0018749      <-- GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTG-TTTT
ET0148262      <-- GTTGTATGCTTTATATCATAATAAATAAAATT-CTCAGTTGTGTT-TTAT
CT0110721      <-- GTTGTATGCTTTATATCATAATAAATAAAATT-CTCAGTTGTGCT-TTAT
ET0109649      <-- GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTG-CTTT
ET0003290      <-- GTGTTGTATGCTTTATATCATAATAAATAAAAATTCTCAGTTGTGCTTTT
ET0140946      <-- ..................................................
CT0015428      <-- GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTG-TTTT
CT0076861      <-- GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTG-TTTT
ET0051276      --> ..................................................
ET0139720      --> ..................................................
ET0138107      --> ..................................................
ET0009699      --> ..................................................
ET0024179      --> ..................................................
ET0024656      --> ..................................................
ET0024894      --> ..................................................
ET0029756      --> ..................................................
ET0036631      --> ..................................................
ET0052107      --> ..................................................
ET0109269      --> ..................................................
ET0083756      --> ..................................................
ET0067673      --> ..................................................
ET0069222      --> ..................................................
ET0100875      --> ..................................................
ET0097588      --> ..................................................
ET0066749      --> ..................................................
ET0018021      --> ..................................................
CT0017621      --> ..................................................
ET0120607      --> ..................................................
ET0058468      --> ..................................................
ET0047340      --> ..................................................
CT0081340      --> ..................................................
CT0089909      --> ..................................................
CT0092625      --> ..................................................
CT0098327      --> ..................................................
CT0090846      --> ..................................................
CT0033241      --> ..................................................
ET0066608      --> ..................................................
ET0091690      --> ..................................................
ET0050321      --> ..................................................
ET0016139      --> ..................................................
ET0018875      --> ..................................................
CT0006646      --> ..................................................
ET0060828      --> ..................................................
ET0126842      --> ..................................................
CT0137718      --> ..................................................
CT0138151      --> ..................................................
ET0130916      --> ..................................................
ET0039015      --> ..................................................
CT0086118      --> ..................................................
ET0059586      --> ..................................................
ET0050439      --> ..................................................
ET0036708      --> ..................................................
ET0049750      --> ..................................................
ET0054751      --> ..................................................
ET0049824      --> ..................................................
ET0141432      --> GTGTTGTATGCTTTATATCATAATA.........................
CT0008018      --> GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCTCAGTTGTGacttt
ET0030660      --> GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCCCAGTTGTG-CTTT
ET0035979      --> GTGTTGTATGCTTTATATCA..............................
ET0038602      --> GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCCCAGTTGTGCTTTT
ET0141558      --> GTGTTGTATGCTTTATATCATAATAAATAAAA-TTCCCAGTTGTG-CTTT

               2919   -   2969
RU05621        --> ATGAAAAAAAAA
                   ~~~~~~~~~~~~
ET0035342      <-- ............
CT0107350      <-- ............
ET0059648      <-- ............
CT0097101      <-- ............
ET0079977      <-- ............
ET0022809      <-- ............
CT0047085      <-- ............
ET0015351      <-- ............
ET0022693      <-- ............
CT0034630      <-- ............
ET0043363      <-- ............
ET0076601      <-- ............
ET0077106      <-- ............
ET0019251      <-- ............
ET0028710      <-- ............
ET0081241      <-- ............
ET0079437      <-- ............
ET0011161      <-- ............
ET0099531      <-- ............
ET0095021      <-- ............
CT0044486      <-- ............
ET0026094      <-- ............
ET0005853      <-- ............
ET0085482      <-- ............
ET0048510      <-- ............
CT0017353      <-- ............
ET0058523      <-- ............
ET0048970      <-- ............
ET0058954      <-- ............
ET0115704      <-- ............
ET0100555      <-- ............
ET0039777      <-- ............
ET0049721      <-- ............
ET0009754      <-- ............
ET0021321      <-- ............
ET0050498      <-- ............
ET0041870      <-- ............
ET0029484      <-- ............
ET0018749      <-- ATGAA.......
ET0148262      <-- G..........
CT0110721      <-- GAAAAAAAA..
ET0109649      <-- AT..........
ET0003290      <-- ATG.........
ET0140946      <-- ............
CT0015428      <-- ATGAAAAAAAAA
CT0076861      <-- ATGAAAAAAAA.
ET0051276      --> ............
ET0139720      --> ............
ET0138107      --> ............
ET0009699      --> ............
ET0024179      --> ............
ET0024656      --> ............
ET0024894      --> ............
ET0029756      --> ............
ET0036631      --> ............
ET0052107      --> ............
ET0109269      --> ............
ET0083756      --> ............
ET0067673      --> ............
ET0069222      --> ............
ET0100875      --> ............
ET0097588      --> ............
ET0066749      --> ............
ET0018021      --> ............
CT0017621      --> ............
ET0120607      --> ............
ET0058468      --> ............
ET0047340      --> ............
CT0081340      --> ............
CT0089909      --> ............
CT0092625      --> ............
CT0098327      --> ............
CT0090846      --> ............
CT0033241      --> ............
ET0066608      --> ............
ET0091690      --> ............
ET0050321      --> ............
ET0016139      --> ............
ET0018875      --> ............
CT0006646      --> ............
ET0060828      --> ............
ET0126842      --> ............
CT0137718      --> ............
CT0138151      --> ............
ET0130916      --> ............
ET0039015      --> ............
CT0086118      --> ............
ET0059586      --> ............
ET0050439      --> ............
ET0036708      --> ............
ET0049750      --> ............
ET0054751      --> ............
ET0049824      --> ............
ET0141432      --> ............
CT0008018      --> ............
ET0030660      --> AT..........
ET0035979      --> ............
ET0038602      --> AT..........
ET0141558      --> ............