SNPs of unigene RU05781
               18     -     68
RU05781        --> CACACTGAAAAGAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> CACACTGAAAAGAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0035491      --> CACACTGAAAAGAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0146447      --> CACACTGAAAAGAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
CT0132811      --> ...........GAATGGCCGAGATTGAACCCAAATCCGTGGCTCCGGAGC
CT0137316      --> ...........GAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0126341      --> ...........GAATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0073470      --> ................GCCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0069455      --> .................CCGAGACTGAACCCAAATCCGTGGCTCCGGAGC
ET0023420      --> ............................CCCAAATCCGTGGCTCCGGAGC
ET0030316      --> ............................CCCAAATCCGTGGCTCCGGAGC
ET0040149      --> ............................CCCAAATCCGTGGCTCCGGAGC
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               68     -    118
RU05781        --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> TTCTGGAATGGCTGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0035491      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0146447      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
CT0132811      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
CT0137316      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0126341      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0073470      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0069455      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0023420      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0030316      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
ET0040149      --> TTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTAC
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               118    -    168
RU05781        --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0035491      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0146447      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
CT0132811      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
CT0137316      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0126341      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0073470      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0069455      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0023420      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0030316      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
ET0040149      --> CGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACGGAGGCTCTGGG
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               168    -    218
RU05781        --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ...................AGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0035491      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0146447      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
CT0132811      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
CT0137316      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0126341      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0073470      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0069455      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAAAAGTACTCCAATG
ET0023420      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0030316      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
ET0040149      --> GATGAAGCTGCTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATG
RH29AD233      --> .........................................ACTCCAATG
RH38BB50       --> .........................................ACTCCAATG
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               218    -    268
RU05781        --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Control
ET0050912      <-- .....................................TTCGTAGTGGAGC  Ethylene
ET0025486      <-- ..................................................  Ethylene
CT0019603      <-- ..................................................  Control
CT0028626      <-- ..................................................  Control
ET0076140      <-- ..................................................  Ethylene
CT0124976      <-- ..................................................  Control
ET0080060      <-- ..................................................  Ethylene
CT0040132      <-- ..................................................  Control
CT0062258      <-- ..................................................  Control
ET0013486      <-- ..................................................  Ethylene
ET0057011      <-- ..................................................  Ethylene
ET0042450      <-- ..................................................  Ethylene
ET0122406      <-- ..................................................  Ethylene
ET0141528      <-- ..................................................  Ethylene
ET0132999      <-- ..................................................  Ethylene
CT0081262      <-- ..................................................  Control
ET0038469      <-- ..................................................  Ethylene
ET0029261      --> -CTTTTCT..........................................  Ethylene
ET0035491      --> -CTTTTC--CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Ethylene
ET0146447      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Ethylene
CT0132811      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Control
CT0137316      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Control
ET0126341      --> TCTTTTCT-CGGATTCCGGGGCCCGAAAGAAACGAACTTCGTAGTGGAGC  Ethylene
ET0073470      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Ethylene
ET0069455      --> -CTTTTCTTCGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGTGGAGC  Ethylene
ET0023420      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGT.....  Ethylene
ET0030316      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGT.....  Ethylene
ET0040149      --> -CTTTTCT-CGGATTC--GGGCCCGAA-GAAACGAACTTCGTAGT.....  Ethylene
RH29AD233      --> -CTTTTCT-CGGATTC--GGACCCGAA-GAAACGAACTTCGTAGTGGAGC  WaterDS
RH38BB50       --> -CTTTTCT-CGGATTC--GGACCCGAA-GAAACGAACTTCGTAGTGGAGC  WaterDS
ET0096826      --> ..................................AACTTCGTAGTGGAGC  Ethylene
ET0068555      --> ...................................ACTTCGTAGTGGAGC  Ethylene
ET0088762      --> ...................................ACTTCGTAGTGGAGC  Ethylene
ET0105525      --> ...................................ACTTCGTAGTGGAGC  Ethylene
ET0005139      --> ..................................................  Ethylene
ET0072973      --> ..................................................  Ethylene
CT0109515      --> ..................................................  Control
CT0112144      --> ..................................................  Control
CT0117519      --> ..................................................  Control
CT0079653      --> ..................................................  Control
ET0010459      --> ..................................................  Ethylene
CT0070546      --> ..................................................  Control
ET0028977      --> ..................................................  Ethylene
CT0031775      --> ..................................................  Control
CT0132274      --> ..................................................  Control
CT0129785      --> ..................................................  Control
CT0106957      --> ..................................................  Control
CT0134190      --> ..................................................  Control
ET0038039      --> ..................................................  Ethylene
ET0022161      --> ..................................................  Ethylene
CT0024478      --> ..................................................  Control
ET0131124      --> ..................................................  Ethylene
ET0041067      --> ..................................................  Ethylene
ET0044171      --> ..................................................  Ethylene
ET0012953      --> ..................................................  Ethylene
CT0132860      --> ..................................................  Control
ET0081793      --> ..................................................  Ethylene
CT0083375      --> ..................................................  Control
ET0131174      --> ..................................................  Ethylene
ET0021175      --> ..................................................  Ethylene
ET0018229      --> ..................................................  Ethylene
CT0039983      --> ..................................................  Control
CT0024786      --> ..................................................  Control
ET0079228      --> ..................................................  Ethylene
CT0063388      --> ..................................................  Control
CT0011270      --> ..................................................  Control

               268    -    318
RU05781        --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0050912      <-- TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> TCACTTA...........................................
ET0146447      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
CT0132811      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
CT0137316      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0126341      --> TCACTTATAACTAT....................................
ET0073470      --> TCACTTATAACTATGGAGTCta............................
ET0069455      --> TCACTTATAACTATGGAGTCACTTCCTta.....................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> CCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
RH38BB50       --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0096826      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0068555      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0088762      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0105525      --> TCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGG
ET0005139      --> .....................................GACTGGATTTGGG
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               318    -    368
RU05781        --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0050912      <-- CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> CATTTCGCTATCGCTACTCCAG............................
CT0132811      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAA.................
CT0137316      --> CATTTCGCTATCGCTACTCCAG............................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
RH38BB50       --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0096826      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0068555      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0088762      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0105525      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0005139      --> CATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
ET0072973      --> .........ATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCG
CT0109515      --> ...................CAGATGTTTACAAATTGGTGGAGGATATTCG
CT0112144      --> ...................CAGATGTTTACAAATTGGTGGAGGATATTCG
CT0117519      --> ...................CAGATGTTTACAAATTGGTGGAGGATATTCG
CT0079653      --> ..........................TTACAAATTGGTGGAGGATATTCG
ET0010459      --> ..........................TTACAAATTGGTGGAGGATATTCG
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               368    -    418
RU05781        --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0050912      <-- TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0025486      <-- ...........................GCCTGGTCCGGTTAAAGGTGGGA
CT0019603      <-- .................................TCCGGTTAAAGGTGGGA
CT0028626      <-- ..................................CCGGTTAAAGGTGGGA
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
RH38BB50       --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0096826      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0068555      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0088762      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0105525      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0005139      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0072973      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
CT0109515      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
CT0112144      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
CT0117519      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
CT0079653      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
ET0010459      --> TGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGA
CT0070546      --> ................................................GA
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               418    -    468
RU05781        --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ACAGTGTCATTGCCTTTGTGAAGGACCCTG....................
ET0050912      <-- ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTT.......
ET0025486      <-- ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0019603      <-- ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0028626      <-- ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGGGCTT
RH38BB50       --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0096826      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0068555      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0088762      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0105525      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0005139      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGG................
ET0072973      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0109515      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0112144      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0117519      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0079653      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0010459      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
CT0070546      --> ACAGTGTCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTT
ET0028977      --> ........................ACCCTGATGGTTACACGTTTGAGCTT
CT0031775      --> ......................................ACGTTTGAGCTT
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               468    -    518
RU05781        --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0019603      <-- ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0028626      <-- ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
RH38BB50       --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
ET0096826      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAG..............
ET0068555      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAG..............
ET0088762      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAG..............
ET0105525      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAG..............
ET0005139      --> ..................................................
ET0072973      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0109515      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0112144      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0117519      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0079653      --> ATTCAGAGGCCTTCAA..................................
ET0010459      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0070546      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
ET0028977      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0031775      --> ATTCAGAGGCCTTCAACCCCTGAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0132274      --> .....................GAGCCGCTCTGTCAGATTATGCTTCGAGT
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               518    -    568
RU05781        --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0019603      <-- TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0028626      <-- TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
ET0076140      <-- ............GCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0124976      <-- .....................................cgACTAGGGTTGA
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
RH38BB50       --> TGGTGATCTCGAGCGCGCAACCAGCTTCTATGAAAGGGCACTAGGGTTGA
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0109515      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0112144      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0117519      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0079653      --> ..................................................
ET0010459      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0070546      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
ET0028977      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0031775      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0132274      --> TGGTGATCTCGAGCGCGCAATCAGCTTCTATGAAAGGGCACTAGGGTTGA
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               568    -    618
RU05781        --> AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0019603      <-- A.................................................
CT0028626      <-- A.................................................
ET0076140      <-- AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0124976      <-- AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
ET0080060      <-- .............................TACAAGTACAACATAGCTATC
CT0040132      <-- ..........................................TAGCTATC
CT0062258      <-- ..........................................TAGCTATC
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> AGCTTTTAAGGAGGATTGAGAGACCTGAGT....................
RH38BB50       --> AGCTTTTAAGGAGGATTGAGAGACCTGAGT....................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> AGt...............................................
CT0109515      --> AGCTTTTAAGGAGGATT.................................
CT0112144      --> AGCTTTTAAGGAGGATT.................................
CT0117519      --> AGCTTTTAAGGAGGATTG................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
ET0028977      --> AGCTTTTAAGGAGGATTGAGAGACCTG.......................
CT0031775      --> AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0132274      --> AGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0129785      --> ...TTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0106957      --> .....TTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATC
CT0134190      --> .................GAGAGACCTGAGTACAAGTACAACATAGCTATC
ET0038039      --> ...........................................AGCTATC
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               618    -    668
RU05781        --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- CTGGGATATGCGGA....................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0124976      <-- CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
ET0080060      <-- CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0040132      <-- CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0062258      <-- CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
ET0013486      <-- ..........................................ACTTATAA
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> CTGGGATATGCGGAAGAAGACCAGACAACTta..................
ET0028977      --> ..................................................
CT0031775      --> CTGGGATATGCGGAAGAAGA..............................
CT0132274      --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0129785      --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0106957      --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
CT0134190      --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
ET0038039      --> CTGGGATATGCGGAAGAAGACCAGACAACTATTCTGGAGCTGACTTATAA
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               668    -    718
RU05781        --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
CT0124976      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
ET0080060      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
CT0040132      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
CT0062258      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
ET0013486      <-- CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATG............
CT0129785      --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGC..
CT0106957      --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
CT0134190      --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
ET0038039      --> CTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTG
ET0022161      --> ................ttTACCAAGGGGAATGCGTATGCACAGATTGCTG
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               718    -    768
RU05781        --> TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- TTGGCACTGATGATGTATACAAGAGTGtcttgtaggtttgtt........
CT0124976      <-- TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
ET0080060      <-- TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
CT0040132      <-- TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
CT0062258      <-- TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
ET0013486      <-- TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
ET0057011      <-- .....................aaAGTGCTGAGGTTGTCGACTTGGTTA-C
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
CT0134190      --> TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAAAC
ET0038039      --> TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
ET0022161      --> TTGGCACTGATGATGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
CT0024478      --> .............TGTATACAAGAGTGCTGAGGTTGTCGACTTGGTAA-C
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               768    -    818
RU05781        --> AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- AAAAGAGCTTGGAGGAAAGATA............................
ET0080060      <-- AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
CT0040132      <-- AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
CT0062258      <-- AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0013486      <-- AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0057011      <-- AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGG..............
CT0134190      --> AAAAGAGCTTGGAGGAAAGA..............................
ET0038039      --> AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0022161      --> AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
CT0024478      --> AAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0131124      --> ....GAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGAC
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               818    -    868
RU05781        --> TCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- TCAAC.............................................
CT0040132      <-- TCAACACCAAGATTACCTCTTT............................
CT0062258      <-- TCAACACCAAGATTACCTCTTT............................
ET0013486      <-- TCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTC
ET0057011      <-- TCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTC
ET0042450      <-- ...............................cGATGGTTGGAAAACTGTC
ET0122406      <-- ................................GATGGTTGGAAAACTGTC
ET0141528      <-- ...............................cGATGGTTGGAAAACTGTC
ET0132999      <-- ................................................TC
CT0081262      <-- ..................................................
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> TCAACACCAAGATTACCTCTTTCCTGGA......................
ET0022161      --> TCAACACCAAGATTACCTCTTTCCTGGACCCAGATGG.............
CT0024478      --> TCAACACCAAGATTACCTCTTTCCTGGACC....................
ET0131124      --> TCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTC
ET0041067      --> ................................GATGGTTGGAAAACTGTC
ET0044171      --> ................................GATGGTTGGAAAACTGTC
ET0012953      --> ...............................gtATGGTTGGAAAACTGTC
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               868    -    918
RU05781        --> CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- CTGGTTGACAATGAGGACTTTCTCAAGGAACTGC................
ET0057011      <-- CTGGTTGACAATGTGGACTTTCTCAAG.......................
ET0042450      <-- CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0122406      <-- CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0141528      <-- CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0132999      <-- CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
CT0081262      <-- .........................AGGAACTGCAGTAAGCAATTGCGTG
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0041067      --> CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0044171      --> CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
ET0012953      --> CTGGTTGACAATGAGGACTTTCTCAAGGAACTGCAGTAAGCAATTGCGTG
CT0132860      --> ...............GACTTTCTCAAGGAACTGCAGTAAGTAATTGCGTG
ET0081793      --> .........................AGGAACTGCAGTAAGCAATTGCGTG
CT0083375      --> ..................................................
ET0131174      --> ..................................................
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               918    -    968
RU05781        --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0122406      <-- AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0141528      <-- AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0132999      <-- AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
CT0081262      <-- AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0038469      <-- ..................................................
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0041067      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0044171      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0012953      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
CT0132860      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
ET0081793      --> AAGTGGAAGTATCCGGATAGTCCTTTCTCATATGAATAAGATGTAATCCA
CT0083375      --> .....................CCTTTCTCATATGAATAAGATGTAATCCA
ET0131174      --> ..........................................GTAATCCA
ET0021175      --> ..................................................
ET0018229      --> ..................................................
CT0039983      --> ..................................................
CT0024786      --> ..................................................
ET0079228      --> ..................................................
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               968    -   1018
RU05781        --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0122406      <-- GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0141528      <-- GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0132999      <-- GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
CT0081262      <-- GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0038469      <-- .........TTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGT....
ET0041067      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0044171      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0012953      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
CT0132860      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0081793      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
CT0083375      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0131174      --> GCTTCTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0021175      --> ....CTATATTAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
ET0018229      --> ..........TAGTAGTAGCCTAGCCAGTACTGGCCGTCTGAATGTCTGT
CT0039983      --> .............................ACTGGCCGTCTGAATGTCTGT
CT0024786      --> ................................GGCCCTCTGAATGTCTGT
ET0079228      --> ......................................CTGAATGTCTGT
CT0063388      --> ..................................................
CT0011270      --> ..................................................

               1018   -   1068
RU05781        --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0122406      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0141528      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0132999      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0081262      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0038469      <-- TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0044171      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0012953      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0132860      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0081793      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTG.............
CT0083375      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0131174      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0021175      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0018229      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0039983      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0024786      --> TTGAGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
ET0079228      --> TTGGGTGGTTTTCAGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0063388      --> .............AGTTGTAACAGGAGTGTTCGTGTGACTTTCGCCTATT
CT0011270      --> ..................................................

               1068   -   1118
RU05781        --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- TCAAAATGGCTGTTGATGTac.............................
ET0122406      <-- TCAAAATGGCTGTTGATcgtc.............................
ET0141528      <-- TCAAAATGGCTGTTGATGTac.............................
ET0132999      <-- TCAAAATGGCTGTTGATGTCAaaaaaaaaagaacgactacgaacaa....
CT0081262      <-- TCAAAATGGCTGTTGATGTC..............................
ET0038469      <-- TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> TCAAAATGGCTGTTGATGTCA.............................
ET0044171      --> TCAAAATGGCTGTTGATGTCA.............................
ET0012953      --> TCAAAATGGCTGTTGATGTC..............................
CT0132860      --> TCAAAATGGCTGTTGATGT...............................
ET0081793      --> ..................................................
CT0083375      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
ET0131174      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
ET0021175      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
ET0018229      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
CT0039983      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTacttt.............
CT0024786      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
ET0079228      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
CT0063388      --> TCAAAATGGCTGTTGATGTCACTCTGTGCCTTCTTTAATATGGTTGTCAC
CT0011270      --> ..................................................

               1118   -   1168
RU05781        --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCACTATGTTTGTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................
ET0050912      <-- ..................................................
ET0025486      <-- ..................................................
CT0019603      <-- ..................................................
CT0028626      <-- ..................................................
ET0076140      <-- ..................................................
CT0124976      <-- ..................................................
ET0080060      <-- ..................................................
CT0040132      <-- ..................................................
CT0062258      <-- ..................................................
ET0013486      <-- ..................................................
ET0057011      <-- ..................................................
ET0042450      <-- ..................................................
ET0122406      <-- ..................................................
ET0141528      <-- ..................................................
ET0132999      <-- ..................................................
CT0081262      <-- ..................................................
ET0038469      <-- CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCACTATGTTTGTCCT
ET0029261      --> ..................................................
ET0035491      --> ..................................................
ET0146447      --> ..................................................
CT0132811      --> ..................................................
CT0137316      --> ..................................................
ET0126341      --> ..................................................
ET0073470      --> ..................................................
ET0069455      --> ..................................................
ET0023420      --> ..................................................
ET0030316      --> ..................................................
ET0040149      --> ..................................................
RH29AD233      --> ..................................................
RH38BB50       --> ..................................................
ET0096826      --> ..................................................
ET0068555      --> ..................................................
ET0088762      --> ..................................................
ET0105525      --> ..................................................
ET0005139      --> ..................................................
ET0072973      --> ..................................................
CT0109515      --> ..................................................
CT0112144      --> ..................................................
CT0117519      --> ..................................................
CT0079653      --> ..................................................
ET0010459      --> ..................................................
CT0070546      --> ..................................................
ET0028977      --> ..................................................
CT0031775      --> ..................................................
CT0132274      --> ..................................................
CT0129785      --> ..................................................
CT0106957      --> ..................................................
CT0134190      --> ..................................................
ET0038039      --> ..................................................
ET0022161      --> ..................................................
CT0024478      --> ..................................................
ET0131124      --> ..................................................
ET0041067      --> ..................................................
ET0044171      --> ..................................................
ET0012953      --> ..................................................
CT0132860      --> ..................................................
ET0081793      --> ..................................................
CT0083375      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCA.............
ET0131174      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCACTATGTTTGTCCT
ET0021175      --> CATGGTTGTCCTGGTTTATGaaacc.........................
ET0018229      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTac.............
CT0039983      --> ..................................................
CT0024786      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCACTATGTTTGTCCT
ET0079228      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGTCACTATGTTTGTCCT
CT0063388      --> CATGGTTGTCCTGGTTTATGCCAGTAGTATCTCGT...............
CT0011270      --> .....................CAGTAGTATCTCGTCACTATGTTTGTCCT

               1168   -   1218
RU05781        --> AGTTTATGCTAGGTAGTATCTCCCATGTTTATGTCGGTTTTACTAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ..................................................  Control
ET0050912      <-- ..................................................  Ethylene
ET0025486      <-- ..................................................  Ethylene
CT0019603      <-- ..................................................  Control
CT0028626      <-- ..................................................  Control
ET0076140      <-- ..................................................  Ethylene
CT0124976      <-- ..................................................  Control
ET0080060      <-- ..................................................  Ethylene
CT0040132      <-- ..................................................  Control
CT0062258      <-- ..................................................  Control
ET0013486      <-- ..................................................  Ethylene
ET0057011      <-- ..................................................  Ethylene
ET0042450      <-- ..................................................  Ethylene
ET0122406      <-- ..................................................  Ethylene
ET0141528      <-- ..................................................  Ethylene
ET0132999      <-- ..................................................  Ethylene
CT0081262      <-- ..................................................  Control
ET0038469      <-- AGTTTATGCTAGGTAGTATCTCCCATGTTTATG-CGGTTTctaaaatacc  Ethylene
ET0029261      --> ..................................................  Ethylene
ET0035491      --> ..................................................  Ethylene
ET0146447      --> ..................................................  Ethylene
CT0132811      --> ..................................................  Control
CT0137316      --> ..................................................  Control
ET0126341      --> ..................................................  Ethylene
ET0073470      --> ..................................................  Ethylene
ET0069455      --> ..................................................  Ethylene
ET0023420      --> ..................................................  Ethylene
ET0030316      --> ..................................................  Ethylene
ET0040149      --> ..................................................  Ethylene
RH29AD233      --> ..................................................  WaterDS
RH38BB50       --> ..................................................  WaterDS
ET0096826      --> ..................................................  Ethylene
ET0068555      --> ..................................................  Ethylene
ET0088762      --> ..................................................  Ethylene
ET0105525      --> ..................................................  Ethylene
ET0005139      --> ..................................................  Ethylene
ET0072973      --> ..................................................  Ethylene
CT0109515      --> ..................................................  Control
CT0112144      --> ..................................................  Control
CT0117519      --> ..................................................  Control
CT0079653      --> ..................................................  Control
ET0010459      --> ..................................................  Ethylene
CT0070546      --> ..................................................  Control
ET0028977      --> ..................................................  Ethylene
CT0031775      --> ..................................................  Control
CT0132274      --> ..................................................  Control
CT0129785      --> ..................................................  Control
CT0106957      --> ..................................................  Control
CT0134190      --> ..................................................  Control
ET0038039      --> ..................................................  Ethylene
ET0022161      --> ..................................................  Ethylene
CT0024478      --> ..................................................  Control
ET0131124      --> ..................................................  Ethylene
ET0041067      --> ..................................................  Ethylene
ET0044171      --> ..................................................  Ethylene
ET0012953      --> ..................................................  Ethylene
CT0132860      --> ..................................................  Control
ET0081793      --> ..................................................  Ethylene
CT0083375      --> ..................................................  Control
ET0131174      --> AGTTTATGCTAGGTAGTATCTCCCATGTTTA...................  Ethylene
ET0021175      --> ..................................................  Ethylene
ET0018229      --> ..................................................  Ethylene
CT0039983      --> ..................................................  Control
CT0024786      --> AGTTTATGCTAGGTAGTATCTCCCATGTTTATG-CGGTTT--CT-AAAAT  Control
ET0079228      --> AGTTTATGCTAGGTAGTATCTCCCATGTTTATGTCGGTTTTACTAAAAAT  Ethylene
CT0063388      --> ..................................................  Control
CT0011270      --> AGTTTATGCTAGGTAGTATCTCCCATGTTTATG-CGGTTT--CT-AAAAT  Control

               1218   -   1268
RU05781        --> ACTTTAAAACAATAATAGCAAAACAGTAAACAAGAACTTATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0096219      <-- ...........................................
ET0050912      <-- ...........................................
ET0025486      <-- ...........................................
CT0019603      <-- ...........................................
CT0028626      <-- ...........................................
ET0076140      <-- ...........................................
CT0124976      <-- ...........................................
ET0080060      <-- ...........................................
CT0040132      <-- ...........................................
CT0062258      <-- ...........................................
ET0013486      <-- ...........................................
ET0057011      <-- ...........................................
ET0042450      <-- ...........................................
ET0122406      <-- ...........................................
ET0141528      <-- ...........................................
ET0132999      <-- ...........................................
CT0081262      <-- ...........................................
ET0038469      <-- ttt........................................
ET0029261      --> ...........................................
ET0035491      --> ...........................................
ET0146447      --> ...........................................
CT0132811      --> ...........................................
CT0137316      --> ...........................................
ET0126341      --> ...........................................
ET0073470      --> ...........................................
ET0069455      --> ...........................................
ET0023420      --> ...........................................
ET0030316      --> ...........................................
ET0040149      --> ...........................................
RH29AD233      --> ...........................................
RH38BB50       --> ...........................................
ET0096826      --> ...........................................
ET0068555      --> ...........................................
ET0088762      --> ...........................................
ET0105525      --> ...........................................
ET0005139      --> ...........................................
ET0072973      --> ...........................................
CT0109515      --> ...........................................
CT0112144      --> ...........................................
CT0117519      --> ...........................................
CT0079653      --> ...........................................
ET0010459      --> ...........................................
CT0070546      --> ...........................................
ET0028977      --> ...........................................
CT0031775      --> ...........................................
CT0132274      --> ...........................................
CT0129785      --> ...........................................
CT0106957      --> ...........................................
CT0134190      --> ...........................................
ET0038039      --> ...........................................
ET0022161      --> ...........................................
CT0024478      --> ...........................................
ET0131124      --> ...........................................
ET0041067      --> ...........................................
ET0044171      --> ...........................................
ET0012953      --> ...........................................
CT0132860      --> ...........................................
ET0081793      --> ...........................................
CT0083375      --> ...........................................
ET0131174      --> ...........................................
ET0021175      --> ...........................................
ET0018229      --> ...........................................
CT0039983      --> ...........................................
CT0024786      --> ACTTTAAA-CAATAATAGac.......................
ET0079228      --> ACTTTAAAACAATAATAGCAAAACAGTAAACAAGAACTTATAG
CT0063388      --> ...........................................
CT0011270      --> ACTTTAAA-CAATAATAGCAAA-CAGTAA-CAAGAAactt...