SNPs of unigene RU05868
               1      -     51
RU05868        --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
ET0030097      --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
ET0042043      --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
ET0044590      --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
ET0045684      --> ATCGAAGCATAGCTTGATTGGCAAACCGAAACGAACAATACTTTTCCAAC
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               51     -    101
RU05868        --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- .............................taAAAAAATTCCAAACCATCA
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
ET0030097      --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
ET0042043      --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
ET0044590      --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
ET0045684      --> ACCCAAATAATCCTAAAGAAAATAACAAAATAAAAAATTCCAAACCATCA
ET0137882      --> ...............................AAAAAATTCCAAACCATCA
ET0141650      --> ...........................................ACCATCA
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               101    -    151
RU05868        --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0030097      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0042043      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0044590      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0045684      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0137882      --> TTTCCTAT-ATTTTTGTTT-ATTATTATTTTACACCAGTAACAAGTGACT
ET0141650      --> TTTCCTATTATTTTTGTTTTATTATTATTTTACACCAGTAACAAGTGACT
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               151    -    201
RU05868        --> CAATCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- CAATCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTAGAAG
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> CAATCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTA-AAG
ET0030097      --> CAATCTATCACCAAACACACATACAAAAGAAACACAAA-AGGGGTAGAAG
ET0042043      --> CAATCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTA-AAG
ET0044590      --> CAATCTATCACCAAACACACATACAAAAGAAACACAAAAGGGGGTAGAAG
ET0045684      --> CAATCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTA-AAG
ET0137882      --> CA-TCTATCACCAAACACACATACAAAAGAAACACAAA--GGGGTAGAAG
ET0141650      --> CAATCTATCACCAAcac.................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               201    -    251
RU05868        --> GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
CT0090564      <-- .............................................AAACG
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
ET0030097      --> GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
ET0042043      --> GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
ET0044590      --> GAAGGTTAAAGAACAAAACAAAAATTTTAATCACACAAATCTGTTAAACG
ET0045684      --> GAAGGTTAA-GAACAAA-CAAAAATTT-AATCACACAAATCTGTTAAACG
ET0137882      --> GAAGGTTAA-GAACAAA-CAAAAATTTTAATCACACAAATCTGTTAAACG
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               251    -    301
RU05868        --> G-CCTCCTTCCAACTCCTGCAGGCGATAGAAACCGTAGGAACGTACTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGT-GGA--AT-CTATA
CT0090564      <-- GGCCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGT-GGA--AT-CTATA
CT0094703      <-- ..............cctcGCAGGCGATAGAAACCGTAGGAACGTACTATA
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGTggaatctatac...
ET0030097      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGTggaatctat.....
ET0042043      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGTg.............
ET0044590      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGTggaatcta......
ET0045684      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGTggaatctata....
ET0137882      --> G-CCTCCTTCCAACTCCTGCAGGC-ATAGAAACCGT-GGAA--T-CTATA
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               301    -    351
RU05868        --> CTCATATTTTCTATAGATTGCAGAGACTGGTTCTTATCTAAAAT-CCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- CTCGTATTTTCTATAGATTGCAGAGACTGGTTCTTATCTAAAAT-CCTTT  Ethylene
CT0090564      <-- CTCATATTTTCTATAGATTGCAGAGACTGGTTCTTATCTAAAAT-CCTTT  Control
CT0094703      <-- CTCATATTTTCTATAGATTGCAGAGACTGGTTCTTATCTAAAAT-CCTTT  Control
CT0104584      <-- .........................ACTGGTTCTTATCTAAAAT-CCTTT  Control
CT0107050      <-- ............................GGTTCTTATCTAAAATACCTTT  Control
CT0082498      <-- ..................................................  Control
ET0066287      <-- ..................................................  Ethylene
CT0082435      <-- ..................................................  Control
CT0073076      <-- ..................................................  Control
ET0037621      <-- ..................................................  Ethylene
CT0118295      <-- ..................................................  Control
CT0047421      <-- ..................................................  Control
CT0060184      <-- ..................................................  Control
ET0029604      --> ..................................................  Ethylene
ET0030097      --> ..................................................  Ethylene
ET0042043      --> ..................................................  Ethylene
ET0044590      --> ..................................................  Ethylene
ET0045684      --> ..................................................  Ethylene
ET0137882      --> CTCGTATTTTCTATAGATTGCAGAGACTGGTTCTTATCTAAAAT-CCTTT  Ethylene
ET0141650      --> ..................................................  Ethylene
CT0040435      --> ...........................TGGTTCTTATCTAAAAT-CCTTT  Control
CT0059989      --> ..................................................  Control
ET0127262      --> ..................................................  Ethylene
ET0129810      --> ..................................................  Ethylene
CT0102599      --> ..................................................  Control
CT0134537      --> ..................................................  Control
CT0137277      --> ..................................................  Control
CT0137508      --> ..................................................  Control
CT0138683      --> ..................................................  Control
CT0027873      --> ..................................................  Control
ET0102850      --> ..................................................  Ethylene
CT0019268      --> ..................................................  Control
CT0066124      --> ..................................................  Control
CT0030332      --> ..................................................  Control
ET0148245      --> ..................................................  Ethylene
CT0028247      --> ..................................................  Control

               351    -    401
RU05868        --> GAGAGCCAGAATCCTTATTATT-AGAGAAAAAA-GGT-CCTTTCTT-CCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- GAGAGCCAtaacccctcttgtaa...........................
CT0090564      <-- GAGAGCCAGAATCCTTATTATT-AGAGAAAAAAAGGT-CCTTTCTT-CCA
CT0094703      <-- GAGAGCCAGAATCCTTATTATT-AGAGAAAAAA-GGT-CCTTTCTT-CCA
CT0104584      <-- GAGAGCCAGAATCCTTGTTATT-AGAGAAAAAAAGGT-CCTTTCTT-CCA
CT0107050      <-- GAGAGCCAGAATCCTTGTTATTTAGAGAAAAAAAGGTACCTTTCTTTCCA
CT0082498      <-- ....................................T-CCTTTCTT-CCA
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> GAGAGCCAGAATCCTTGTTA..............................
ET0141650      --> ..................................................
CT0040435      --> GAGAGCCAGAATCCTTATTATT-AGAGAAAAAA-GGT-CCTTTCTT-CCA
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               401    -    451
RU05868        --> CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0094703      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0104584      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0107050      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0082498      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
ET0066287      <-- CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0082435      <-- ..........CCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> CTTGAACGACCCAATACCTTGAGTCAAAGGAAAAGAGAGCCTTCTCTTTG
CT0059989      --> .......................TCAAAGGAAAAGAGAGCCTTCTCTTTG
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               451    -    501
RU05868        --> ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTA......
CT0094703      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTA......
CT0104584      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
CT0107050      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
CT0082498      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
ET0066287      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
CT0082435      <-- ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ATTCGCTGCTTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
CT0059989      --> ATTCGCTGATTGGAGTCCCCATAAACCTCTCCCTTGGATTACTACTAGCT
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               501    -    551
RU05868        --> CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAACTTGGAACCGA
CT0107050      <-- CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAACTTGGAACCGA
CT0082498      <-- CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
ET0066287      <-- CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAACTTGGAACCGA
CT0082435      <-- CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAACTTGGAACCGA
CT0073076      <-- ....................AGCCGTCGGAGCCATGTAGCTTGGAACCGA
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
CT0059989      --> CTAGCTTTGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
ET0127262      --> .......TGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
ET0129810      --> .......TGGCTTTGGCTGAAGCCGTCGGAGCCATGTAGCTTGGAACCGA
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               551    -    601
RU05868        --> GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAACCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTG.........
CT0107050      <-- GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTG.........
CT0082498      <-- GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAA.....
ET0066287      <-- GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAATCCGA
CT0082435      <-- GAACGGAGGGCAGCTTACAAGGa...........................
CT0073076      <-- GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAACCCGA
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> GAACGGAGGGCAGCTTAC................................
CT0059989      --> GAACGGAGGGCAGCTTACAA..............................
ET0127262      --> GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAACCCGA
ET0129810      --> GAACGGAGGGCAGCTTACAAGGCTATCATCATCCTTTAGTGGAAACCCGA
CT0102599      --> ..................................TTTAGTGGAAACCCGA
CT0134537      --> .............................................CCCGA
CT0137277      --> .............................................CCCGA
CT0137508      --> .............................................CCCGA
CT0138683      --> .............................................CCCGA
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               601    -    651
RU05868        --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0082435      <-- ..................................................
CT0073076      <-- AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
ET0129810      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0102599      --> AGGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0134537      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0137277      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0137508      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTT-GATAAACC
CT0138683      --> AAGGGGAGTCAGATCCACCTGCTGTTGGTCTTGTGTACTTTTGATAAACC
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               651    -    701
RU05868        --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- AGAGCTGTT.........................................
CT0082435      <-- ..................................................
CT0073076      <-- AGAGCTGTTTGCTTGT..................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAA.................
ET0129810      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAA.................
CT0102599      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
CT0134537      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
CT0137277      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
CT0137508      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
CT0138683      --> AGAGCTGTTTGCTTGTGGAGTACTCATATTAAAGGTAGGCGGGGTTCGTG
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               701    -    751
RU05868        --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
CT0134537      --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
CT0137277      --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
CT0137508      --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
CT0138683      --> CTTGTTTTAGTGTTGTGAGGTTCATGGTTGATTTTGAGGATTTTGGAGTG
CT0027873      --> .................................................G
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               751    -    801
RU05868        --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> TCCAGATT..........................................
CT0134537      --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
CT0137277      --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
CT0137508      --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
CT0138683      --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
CT0027873      --> TCCAGATTGCTATCATATGCAAAAGGATGTTGCCTTGATTGAGGCAAAGG
ET0102850      --> ...................................TGATTGAGGCAAAGG
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               801    -    851
RU05868        --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
CT0137277      --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
CT0137508      --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
CT0138683      --> GCTCTGCTTTAGCTCTGGACGTG...........................
CT0027873      --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
ET0102850      --> GCTCTGCTTTAGCTCTGGACGTGGTCTTGAAGGAGTAGGCTGAAAGGTTT
CT0019268      --> .............................AAGGAGTAGGCTGAAAGGTTT
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               851    -    901
RU05868        --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..............................................TTCT
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
CT0137277      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
CT0137508      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
CT0138683      --> ..................................................
CT0027873      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
ET0102850      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
CT0019268      --> TCATTGCATTGGTTTCAACAGGAGGGTCTTTTGGCGGGAGTTGACGTTCT
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               901    -    951
RU05868        --> AACCAGTTCCACCACCATGGAAAACCCCCAGATCGGATATCAGCTAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- AACCAGTTCCACCACCATGGAAAACCCCCAGATCGGATATCAGCTAGAGG
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> AACCAGTTCCACCACCATGG..............................
CT0137277      --> AACCAGTTCC........................................
CT0137508      --> AACCAGTTCCACCACCATGG..............................
CT0138683      --> ..................................................
CT0027873      --> AACCAGTT..........................................
ET0102850      --> AACCAGTTCCACCACCATGGAAAACCCCCAGATCGGATATCAGCTAGAGG
CT0019268      --> AACCAGTTCCACCACCATGGAAAACCCCCAGATCGGATATCAGCTAGAGG
CT0066124      --> ............................................TAGAGG
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               951    -   1001
RU05868        --> TGTTTGACCTGATTTAGGTGTAGCTTTCCACAGCTGGTGAGAGTATGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- TGTTTGACCTGATTTAGGTGTAGCTTTCCACAGCTGGTGAGAGTATGCAT
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> TGTTTGACCTGATTTAGGTGTAGCTTTCCACAGCTGGTGAGAGTATGCAT
CT0019268      --> TGTTTGACCTGATTTAGGTGTAGCTTTCCACAGCTGGTGAGAGTATGCAT
CT0066124      --> TGTTTGACCTGATTTAGATGTAGCTTTCCACAGCTGGTGAGAGTATGCAT
CT0030332      --> ..................................................
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               1001   -   1051
RU05868        --> AAGCCATTGCTCTTTCTCTTTTGACGACAGCCTCAACCTTTTTCTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- AAGCCATTGCTCTTTCTCTTTTGACGACAGCCTCAACCTTTTTCTGCATC
CT0118295      <-- ......................GACGACAGCCTCAACCTTTTTCTGCATC
CT0047421      <-- ...................ctcttctttacctgCAACCTTTTTCTGCATC
CT0060184      <-- ..................................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> AAGCCATTGCTCTTTCTCTTTTGACGACAG....................
CT0019268      --> AAGCCATTGCTCTTTCTCTTTTGACGA.......................
CT0066124      --> AAGCCATTGCTCTTTCTCTTTTGACGACAGCCTCAACCTTTTTCTGCATC
CT0030332      --> ..................TTTTGACGACAGCCTCAACCTTTTTCTGCATC
ET0148245      --> ..................................................
CT0028247      --> ..................................................

               1051   -   1101
RU05868        --> CTCGCCTCTATTTCCTCTTTAGTTAGCAAGCTATCATCCCAGTCATCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- CTCGCCTCTAT.......................................
CT0118295      <-- CTCGCCTCTATTTCCTCTTTAGTTAGCAAGCTATCATCCCAGTCATCGTT
CT0047421      <-- CTCGCCTCTATTTCCTCTTTAGTTAGCAAGCTATCATCCCAGTCATCGTT
CT0060184      <-- .....................................CCCAGTCATCGTT
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> CTCGCCTCTATTTCCTCTTTAGTTAGCAAGCTATCATCCCAGTCATCGTT
CT0030332      --> CTCGCCTCTATTTCCTCTTTAGTTAGCAAGCTATCATCCCAGTCATCGTT
ET0148245      --> ..............................taATCATCC-AGTCATCGTT
CT0028247      --> ..................................................

               1101   -   1151
RU05868        --> ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
CT0047421      <-- ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
CT0060184      <-- ATTTTCCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
CT0030332      --> ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCC.................
ET0148245      --> ATTT-CCCATCTCAGATGCCTGGCTCAAGGTCCATTTGCCAAATGTGTTT
CT0028247      --> ..................................................

               1151   -   1201
RU05868        --> TCAACATCTTTGTCATTCTTGTATTGAACTTGACGTCTTGCTTGGCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- TCAACATCTTTGTCATTCTTGTATTGAACTTGACGTCT............
CT0047421      <-- TCAACATCTTTGTCATTCTTGTATTGAACT....................
CT0060184      <-- TCAACATCTTTGTCATTCTTGTATTGAACTTGACGTCTTGCTTGGCTTTC
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> TCAACATCTTTGTCATTCTTGTta..........................
CT0030332      --> ..................................................
ET0148245      --> TCAACATCTTTGTCATTCTTGTATTGAACTTGACGTCTTGCTTGGCTTTC
CT0028247      --> ..................................................

               1201   -   1251
RU05868        --> TAACATCTGGATCCTCCGTGACTGAATCTGAGATTGAACCCGCACTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- TAACATCTGGATCCTCCGTGACTGAATCTGAGATTGAACCCGCACTAAGA
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> TAACATCTGGATCCTCCGTGACTGAATCTGAGATTGAACCCGCACCAAGA
CT0028247      --> ..................................................

               1251   -   1301
RU05868        --> GTTGCATGTATTTCATGGCATTCGCTGTTTGACGCTTGACATTCTGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- GTTGCATGTATTTCATGGCATTCGCTGTTTGACGCTTGACATTCTGTCCC
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> GTTGCATGTATTTCATGGCATTCGCTGTTTGACGCTTGACATTCTGTCCC
CT0028247      --> ..........................GTTTGACGCTTGACATTCTGTCCC

               1301   -   1351
RU05868        --> CTAACCACTCCTTGAAGCCTCACTAGACCC-TTTAGAGCTCTAAAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ..................................................
CT0090564      <-- ..................................................
CT0094703      <-- ..................................................
CT0104584      <-- ..................................................
CT0107050      <-- ..................................................
CT0082498      <-- ..................................................
ET0066287      <-- ..................................................
CT0082435      <-- ..................................................
CT0073076      <-- ..................................................
ET0037621      <-- ..................................................
CT0118295      <-- ..................................................
CT0047421      <-- ..................................................
CT0060184      <-- CTAACCACTCCTTGA...................................
ET0029604      --> ..................................................
ET0030097      --> ..................................................
ET0042043      --> ..................................................
ET0044590      --> ..................................................
ET0045684      --> ..................................................
ET0137882      --> ..................................................
ET0141650      --> ..................................................
CT0040435      --> ..................................................
CT0059989      --> ..................................................
ET0127262      --> ..................................................
ET0129810      --> ..................................................
CT0102599      --> ..................................................
CT0134537      --> ..................................................
CT0137277      --> ..................................................
CT0137508      --> ..................................................
CT0138683      --> ..................................................
CT0027873      --> ..................................................
ET0102850      --> ..................................................
CT0019268      --> ..................................................
CT0066124      --> ..................................................
CT0030332      --> ..................................................
ET0148245      --> CTAACCACTCCTTGAAGCCTCACTAGACCCCTTTAGAGCTCTAAAGCTTC
CT0028247      --> CTAACCACTCCTTGAAGCCTCACTAGACCC-TTTAGAGCTCTAAAGCTTC

               1351   -   1401
RU05868        --> TCCTTGCCATATAACCTCTATAGGCTGCTTGGATTTTAGTAGCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0023330      <-- ................................................
CT0090564      <-- ................................................
CT0094703      <-- ................................................
CT0104584      <-- ................................................
CT0107050      <-- ................................................
CT0082498      <-- ................................................
ET0066287      <-- ................................................
CT0082435      <-- ................................................
CT0073076      <-- ................................................
ET0037621      <-- ................................................
CT0118295      <-- ................................................
CT0047421      <-- ................................................
CT0060184      <-- ................................................
ET0029604      --> ................................................
ET0030097      --> ................................................
ET0042043      --> ................................................
ET0044590      --> ................................................
ET0045684      --> ................................................
ET0137882      --> ................................................
ET0141650      --> ................................................
CT0040435      --> ................................................
CT0059989      --> ................................................
ET0127262      --> ................................................
ET0129810      --> ................................................
CT0102599      --> ................................................
CT0134537      --> ................................................
CT0137277      --> ................................................
CT0137508      --> ................................................
CT0138683      --> ................................................
CT0027873      --> ................................................
ET0102850      --> ................................................
CT0019268      --> ................................................
CT0066124      --> ................................................
CT0030332      --> ................................................
ET0148245      --> TCCTTGCCATATAACCTCTATAG.........................
CT0028247      --> TCCTTGCCATATAACCTCTATAGGCTGCTTGGATTTTAGTAGCAGAAG