Rose Transcriptome Database

               1      -     51
RU05879        --> GTTTTTTTTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- GTTTTTTTTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
CT0118424      <-- ..TTTTTTTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
ET0012768      <-- ......TTTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
CT0083318      <-- ...........ACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
ET0008394      <-- .............................AAA--GAATGTATTGCAAAGT
CT0014018      <-- ...............................................AGT
CT0024488      <-- ...............................................AGT
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> .....TTTTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
ET0056393      --> .......TTTGACGAC-AGAAAA-TATTTAAA--GAATGTATTGCAAAGT
CT0127258      --> ..........GACGACGAGAAAAGTATTTAAAAGGAATGTATTGCAAAGT
CT0111811      --> ..................GAAAA-TATTTAAA--GAATGTATTGCAAAGT
CT0006022      --> .............................AAA--GAATGTATTGCAAAGT
ET0132177      --> .............................AAA--GAATGTATTGCAAAGT
ET0137231      --> .............................aaagaaataGTATTGCAAAGT
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               51     -    101
RU05879        --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0118424      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0012768      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0083318      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0008394      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0014018      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0024488      <-- TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0056393      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0127258      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0111811      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0006022      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0132177      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
ET0137231      --> TTTGGAAAGTGATGATACAAACTGTCTCTATGAATAGTTGCCATATAGTG
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               101    -    151
RU05879        --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0118424      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0012768      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0083318      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0008394      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0014018      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0024488      <-- ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTTTGCTTT-A
ET0035355      <-- .......ATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0066635      <-- .................CAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0089815      <-- .................CAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0056393      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0127258      --> ATCTAATATATTGCGCTCAAAGCAAAAGATATCTCAGGACTT-GCTTT-A
CT0111811      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0006022      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
ET0132177      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTTTA
ET0137231      --> ATCTAATATATTGCGCTCAAAGCAAA-GATATCTCAGGACTT-GCTTT-A
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               151    -    201
RU05879        --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ATACATGAGGC.......................................
CT0118424      <-- ATACATGAGGC.......................................
ET0012768      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCC..........
CT0083318      <-- AT................................................
ET0008394      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTAC.....
CT0014018      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
CT0024488      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0035355      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0066635      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0089815      <-- ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0012042      <-- .TACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0015163      <-- .TACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0016283      <-- .TACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0021709      <-- .TACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0054664      <-- .TACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0056393      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGG.
CT0127258      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
CT0111811      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
CT0006022      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0132177      --> ATACATGAGGCACTA-CAAAA-TTAATTTGATGAAACTCCTCTACAAGGT
ET0137231      --> ATACATGAGGCACTAACAAAAATTAATTTGATGAAACTCCTCTACAAGGT
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               201    -    251
RU05879        --> GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
CT0024488      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0035355      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0066635      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0089815      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0012042      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0015163      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0016283      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0021709      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0054664      <-- GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0025733      <-- ..........TGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0134700      <-- ...............................CTTCGATTCTTGGAGAACA
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0056393      --> ..................................................
CT0127258      --> GCCTATGAGGT.......................................
CT0111811      --> GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
CT0006022      --> G.................................................
ET0132177      --> GCCTATGAGGTGGAAAACACAAGAAACATTTCTTCGATTCTTGGAGAACA
ET0137231      --> GCCTATGAGGTGGAAAAC-CAAGAAACATTTCTTCGATTCTTGGAGAACA
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               251    -    301
RU05879        --> ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ATTAGGTTACTCGCACTTAATGGATC........................
CT0024488      <-- ATTAGGTTACTCGCACTTAATGGATC........................
ET0035355      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0066635      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0089815      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0012042      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0015163      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0016283      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0021709      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0054664      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0025733      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0134700      <-- ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ATTAGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ATTAGGTTACTCGCACTTAA..............................
CT0006022      --> ..................................................
ET0132177      --> ATTAGGTTACTCGCACTTAATGGATCG.......................
ET0137231      --> ATTAGGTTACTCGCACTTAATGGATCGG......................
CT0009613      --> ...AGGTTACTCGCACTTAATGGATCGGTATATGTGACGGACAAATAGCA
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               301    -    351
RU05879        --> AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCA.
ET0066635      <-- AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
ET0089815      <-- AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
ET0134700      <-- AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
ET0118902      <-- ......CCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
ET0009871      <-- ..............CCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
CT0084647      <-- ........................CGAGCATGAGGAAGAAACCATAGCAG
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> AAGCTGCCCGGAAGCCCACAGATCC.........................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> AAGCTGCCCGGAAGCCCACAGATCCGAGCATGAGGAAGAAACCATAGCAG
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               351    -    401
RU05879        --> ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ATGCATGC..........................................
ET0089815      <-- ATGCATGC..........................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
ET0134700      <-- ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
ET0118902      <-- ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
ET0009871      <-- ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
CT0084647      <-- ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
CT0072749      <-- .................AAAGAAAGAATGATGTTTG-CATAAACCCGGA-
CT0072632      <-- ...................aaagaaataGATGTTTGTCATAAACCCGGAA
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ATGCATGCCATGTAACCAAAGAA-GAATGATGTTTG-CATAAACCCGGA-
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               401    -    451
RU05879        --> -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAG......
ET0134700      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
ET0118902      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
ET0009871      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGA..................
CT0084647      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
CT0072749      <-- -CATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
CT0072632      <-- CCATATCCGAGCGTGCGTAGTAGTAATACAGACAGTAGGCATAGATGAAT
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> -CATATCCGAGCGTGCGTA...............................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               451    -    501
RU05879        --> ATGCCAGTCGACCCACCACAGAGAAAAGA-TCTCCACCACCACTCATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ATGCCAGTC.........................................
ET0118902      <-- ATGCCAGTCGACCCACCACAGAGAAAAGA-TCTCCACCACCACTCATGGT
ET0009871      <-- ..................................................
CT0084647      <-- ATGCCAGTCGACCCACCACAGAGAAAAGA-TCTCCACCACCACTCATGGT
CT0072749      <-- ATGCCAGTCGACCCACCACAGAGAAAAGA-TCTCCACCACCACTCATGGT
CT0072632      <-- ATGCCAGTCGACCCACCACAGAGAAAAGA-TCTCCACCACCACTCATGGT
CT0075026      <-- .......................AAAAGAATCTCCACCACCACTCATGGT
ET0004797      <-- .....................................CACCACTCATGGT
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               501    -    551
RU05879        --> CCTCAGCAGCTAGTTGGAAATATGTCAATGCCACGGTAATGAAAGCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- CCTCAGCAGCTAGTTGGAAATATGTCAA......................
ET0009871      <-- ..................................................
CT0084647      <-- CCTCAGCAGCTAGT....................................
CT0072749      <-- CCTCAGCAGCTAGTTGGAAATATGTCAATGCCACGGTAATGAAAGCGGTG
CT0072632      <-- CCTCAGCAGCTAGTTGGAAATATGTCAATGCCACGGTAATGAAAGCGGTG
CT0075026      <-- CCTCAGCAGCTAGTTGGAAATATGTCAATGCCACGGTAATGAAAGCGGTG
ET0004797      <-- CCTCAGCAGCTAGTTGGAAATATGTCAATGCCACGGTAATGAAAGCGGTG
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> .....................ATGTCAATGCCACGGTAATGAAAGCGGTG
CT0013075      --> ......................TGTCAATGCCACGGTAATGAAAGCGGTG
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               551    -    601
RU05879        --> ACTATCAGTAGAATGATAAACACGAT-AAACAAGATGCTGTAAATGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ACTATCAGTAGAATGATAAACACGATTAAACAAcgatcgctagtaaa...
CT0072632      <-- ACTATCAGTAGAATGATAAACACGAT-AAACAAGtattgtcttgttaaa.
CT0075026      <-- ACTATCAGTAGAATGATAAACACGATtaaactaagtattgtcttgttaaa
ET0004797      <-- ACTATCAGTAGAATGATAAACACGAT-AAACAAGATGCTGTAAATGGTGT
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ACTATCAGTAGAATGATAAACACGAT-AAACAAGATGCTGTAAATGGTGT
CT0013075      --> ACTATCAGTAGAATGATAAACACGAT-AAACAAGATGCTGTAAATGGTGT
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               601    -    651
RU05879        --> AAATCCTGTGACCCCAGACACTGGCAAAGATGTAGTACAGTTCAATATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- AAATCCTGTGACCCCAGACACTGGCAAAGATGTAGTACAGTTCAATATAT
CT0071996      <-- ...............................................TAT
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> AAATCCTGTGACCCCAGACACTGGCAAAGATGTAGTACAGTTCAATATAT
CT0013075      --> AAATCCTGTGACCCCAGACACTGGCAAAGATGTAGTACAGTTCAATATAT
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               651    -    701
RU05879        --> ATGGCACTGAAAGGCAGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ATGGCACTGAAAGG....................................
CT0071996      <-- ATGGCACTGAAAGGCAGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
CT0029207      <-- ...............................CCATTTGAGGGACTGTTGC
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ATGGCACTGAAAGGCAGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
CT0013075      --> ATGGCACTGAAAGGCAGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
ET0068266      --> ...............AGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
ET0087401      --> ..............aAGAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
ET0073477      --> .............aagaAAAGCCAGCCATTGCCATTTGAGGGACTGTTGC
ET0007516      --> ..............................GCCATTTGAGGGACTGTTGC
ET0061242      --> ......agtaaagtcctagtcctatttgtcctatTTTGAGGGACTGTTGC
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               701    -    751
RU05879        --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- CCGGTACCAAGGCAAGGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
CT0029207      <-- CCGGTACCAAGGCAAGGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0047675      <-- ..................CGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> CCGGTACCAAGGCAAGGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
CT0013075      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0068266      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0087401      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0073477      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0007516      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
ET0061242      --> CCGGTACCAAGGCAAAGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
CT0020887      --> ....TACCAAGGCAAGGGCGGAATCTCTCTGGGATACTTAGTGGTGCGAA
CT0005236      --> ..............................GGGATACTTAGTGGTGCGAA
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               751    -    801
RU05879        --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
CT0029207      <-- CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
ET0047675      <-- CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
ET0114299      <-- ............................CTTCCCGGCAATCCCACCCAAC
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> CAGGAG............................................
CT0013075      --> CAGGAGtcg.........................................
ET0068266      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTT...................
ET0087401      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCT....................
ET0073477      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCT....................
ET0007516      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
ET0061242      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTT...................
CT0020887      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
CT0005236      --> CAGGAGCTTGGAACTCAGCTTTACTGTTCTTCCCGGCAATCCCACCCAAC
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               801    -    851
RU05879        --> ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
CT0029207      <-- ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
ET0047675      <-- ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
ET0114299      <-- ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
ET0037326      <-- ...................aAAGTGTCCATATTAGAACTATAACCACAAT
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAA.......
ET0061242      --> ..................................................
CT0020887      --> ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
CT0005236      --> ACCAATAAAGGTGATGTAACAAGTGTCCATATTAGAACTATAACCACAAT
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               851    -    901
RU05879        --> TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAA............
CT0029207      <-- TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
ET0047675      <-- TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
ET0114299      <-- TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
ET0037326      <-- TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAGTAT
CT0005236      --> TGTGCCAAATGGAAGTGCTGCAGTGGCTGTGTAAGCAATTGCGACAG...
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               901    -    951
RU05879        --> TCAAAAAGCAGAATGTGAGAAACAAAGGTCCACAGAAGAGGCATCCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- TCAAAAAGCAG.......................................
ET0047675      <-- TCA...............................................
ET0114299      <-- TCAAAAAGCAGAATGTGAGAAACAAAGGTCCACAGAAGAGGCATCCCGTC
ET0037326      <-- TCAAAAAGCAGAATGTGAGAAACAAAGGTCCACAGAAGAGGCATCCCGTC
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> TCAAAAAGCAGAATGTGAGAAACAAAGGTCCACA................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               951    -   1001
RU05879        --> AACAACAGATTTCGAACCCAGTTTGTCCCCTCTAGCTGGCAATAAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- AACAACAGATTTCGAACCCAGTTTGTCCCCTCTAGCTGGCAATAAAATGA
ET0037326      <-- AACAACAGATTTCGAACCCAGTTTGTCCCCTCTAGCTGGCAATAAAATGA
ET0099607      <-- .caAACAGATTTCGAACCCAGTTTGTCCCCTCTAGCTGGCAATAAAATGA
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1001   -   1051
RU05879        --> AGTAGCAGTATAGCCTGCAATTCCCGACGTGAGCGCATAAATTACAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- AGTAGCAGTATAGCCTGCAAT.............................
ET0037326      <-- AGTAGCAGTATAGCCTGCAATTCCCGACGTGAGCGCATAAATTACAACTA
ET0099607      <-- AGTAGCAGTATAGCCTGCAATTCCCGACGTGAGCGCATAAATTACAACTA
CT0085268      <-- ...............TGCAATTCCCGACGTGAGCGCATAAATTACAACTA
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1051   -   1101
RU05879        --> GAGCGGTAAATAGGGCACCTCGGTTGTATGGATAAAAGACACCGACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- GAGCGG............................................
ET0099607      <-- GAGCGGTAAATAGGGCACCTCGGTTGTATGGATAAAAGACACCGACAAGA
CT0085268      <-- GAGCGGTAAATAGGGCACCTCGGTTGTATGGATAAAAGACACCGACAAGA
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1101   -   1151
RU05879        --> GCGAGTACGAAGATGAAGATTGTAAGTGTAAAAAGTTGGGTGCCGGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- GCGAGTACGAAGATGAAGATTGTAAGTGTAAAAAGTTGGGTGCCGGAACC
CT0085268      <-- GCGAGTACGAAGATGAAGATTGTAAGTGTAAAAAGTTGGGTGCCGGAACC
RH16M130       <-- ......ACGAAGATGAAGATTGTAAGTGTAAAAAGTTGGGTGCCGGAACC
RH24AB163      <-- ......ACGAAGATGAAGATTGTAAGTGTAAAAGGTTGGGTGCCGGAACC
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1151   -   1201
RU05879        --> AAGAGCTGCTGCAAACAGAGACTTGTATTTGGGAAACCTAAATACATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- AAGAGCTGCTGCAAACAGAGACTTGTATTTGGGAAACCTAAATACATCTC
CT0085268      <-- AAGAGCTGCTGCAAACAGAGACTTGTATTTGGGAAACCTAAATACATCT.
RH16M130       <-- AAGAGCTGCTGCAAACAGAGACTTGTATTTGGGAAACCTAAATACATCTC
RH24AB163      <-- AAGAGCTGCTGCAAACAGAGACTTGTATTTGGGAAACCTAAATACATCTC
CT0126154      <-- ................................tAAACCTAAATACATCTC
CT0125166      <-- ..................................AACCTAAATACATCTC
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1201   -   1251
RU05879        --> CGTGAATGTATTTCCATCCAGTCTCTTCTTGGTCTTCAGCTGCTTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- CGTGAATG..........................................
CT0085268      <-- ..................................................
RH16M130       <-- CGTGAATGTATTTCCATCCAGTCTCTTCTTGGTCTTCAGCTGCTTCCTCA
RH24AB163      <-- CGTGAATGTATTTCCATCCAGTCTCTTCTTGGTCTTCAGCTGCTTCCTCA
CT0126154      <-- CGTGAATGTATTTCCATCCAGTCTCTTCTTGGTCTTCAGCTGCTTCCTCA
CT0125166      <-- CGTGAATGTATTTCCATCCAGTCTCTTCTTGGTCTTCAGCTGCTTCCTCA
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1251   -   1301
RU05879        --> TCATGGGCATATTT-GACAAAATCGTTCTTAAGCACTCGCATAAGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- TCATGGGCATATTT-GACAAAATCGTTCTTAAGCACTCGCATAAGAATTG
RH24AB163      <-- TCATGGGCATATTT-GACAAAATCGTTCTTAAGCACTCGCATAAGAATTG
CT0126154      <-- TCATGGGCATATTT-GACAAAATCGTTCTTAAGCACTCGCATAAGAATTG
CT0125166      <-- TCATGGGCATATTTTGACAAAATCGTTCTTAAGCACTCGCATAAGAATTG
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1301   -   1351
RU05879        --> TGGCAAGAAACCCAGTCAAGAGCAAAACTGTGACACATGAATTAATAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................  Control
CT0118424      <-- ..................................................  Control
ET0012768      <-- ..................................................  Ethylene
CT0083318      <-- ..................................................  Control
ET0008394      <-- ..................................................  Ethylene
CT0014018      <-- ..................................................  Control
CT0024488      <-- ..................................................  Control
ET0035355      <-- ..................................................  Ethylene
ET0066635      <-- ..................................................  Ethylene
ET0089815      <-- ..................................................  Ethylene
ET0012042      <-- ..................................................  Ethylene
ET0015163      <-- ..................................................  Ethylene
ET0016283      <-- ..................................................  Ethylene
ET0021709      <-- ..................................................  Ethylene
ET0054664      <-- ..................................................  Ethylene
ET0025733      <-- ..................................................  Ethylene
ET0134700      <-- ..................................................  Ethylene
ET0118902      <-- ..................................................  Ethylene
ET0009871      <-- ..................................................  Ethylene
CT0084647      <-- ..................................................  Control
CT0072749      <-- ..................................................  Control
CT0072632      <-- ..................................................  Control
CT0075026      <-- ..................................................  Control
ET0004797      <-- ..................................................  Ethylene
CT0071996      <-- ..................................................  Control
CT0029207      <-- ..................................................  Control
ET0047675      <-- ..................................................  Ethylene
ET0114299      <-- ..................................................  Ethylene
ET0037326      <-- ..................................................  Ethylene
ET0099607      <-- ..................................................  Ethylene
CT0085268      <-- ..................................................  Control
RH16M130       <-- TGGCAAGAAACCCAGTCAAGAGCAGAACTGTGACACATGAATTAATAATG  WaterDS
RH24AB163      <-- TGGCAAGAAACCCAGTCAAGAGCAGAACTGTGACACATGAATTAATAATG  WaterDS
CT0126154      <-- TGGCAAGAAACCCAGTCAAGAGCAAAACTGTGACACATGAATTAATAATG  Control
CT0125166      <-- TGGCAAGAAACCCAGTCAAGAGCAAAACTGTGACACATGAATTAATAATG  Control
ET0000877      <-- ..........................ACTGTGACACATGAATTAATAATG  Ethylene
ET0128482      <-- ..................................................  Ethylene
ET0124095      <-- ..................................................  Ethylene
CT0014236      <-- ..................................................  Control
CT0133132      --> ..................................................  Control
ET0056393      --> ..................................................  Ethylene
CT0127258      --> ..................................................  Control
CT0111811      --> ..................................................  Control
CT0006022      --> ..................................................  Control
ET0132177      --> ..................................................  Ethylene
ET0137231      --> ..................................................  Ethylene
CT0009613      --> ..................................................  Control
CT0093798      --> ..................................................  Control
CT0013075      --> ..................................................  Control
ET0068266      --> ..................................................  Ethylene
ET0087401      --> ..................................................  Ethylene
ET0073477      --> ..................................................  Ethylene
ET0007516      --> ..................................................  Ethylene
ET0061242      --> ..................................................  Ethylene
CT0020887      --> ..................................................  Control
CT0005236      --> ..................................................  Control
CT0007961      --> ..................................................  Control
CT0047115      --> ..................................................  Control
ET0121226      --> ..................................................  Ethylene

               1351   -   1401
RU05879        --> GAGAACCAATGGATCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- GAGAACCAATGGATCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
RH24AB163      <-- GAGAACCAATGGATCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
CT0126154      <-- GAGAACCAATGGATCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
CT0125166      <-- GAGAACCAATGGATCTCCAAATGATGAGGCAGGGGATGAGGACTGAGAAT
ET0000877      <-- GAGAACCAATGGATCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
ET0128482      <-- .............TCTCCAAATGATGAGGCAGGG-ATGAGGACTGAGAAT
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1401   -   1451
RU05879        --> ACTTATCCATCCTCTTATCAAAAGGAGTGTTTGTTTCCCTCCATTTTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ACTTATCCATCCTCTTATCAAAAGGAGTGTTTGTTTCCCTCCATTTTACT
RH24AB163      <-- ACTTATCCATCCTCTTATCAAAAGGAGTGTTTGTTTCCCTCCATTTTACT
CT0126154      <-- ACTTATCCATCC......................................
CT0125166      <-- ACTTATCCATCC......................................
ET0000877      <-- ACTTATCCATCCTCTTATCAAAAGGAGTGTTTGTTTCCCTCCATTTTACT
ET0128482      <-- ACTTATCCATCCTCTTATCAAAAGGAGTGTTTGTTTCCCTCCATTTTACT
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1451   -   1501
RU05879        --> GTATACAAAAACTCAACATCGACTTCTTTGTCCTCAGTAAGGTCCACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- GTATACAAAAACTCAACATCGACTTCTTTGTCCTCAGTAAGGTCCACAAG
RH24AB163      <-- GTATACAAAAACTCAACATCGACTTCTTTGTCCTCAGTAAGGTCCACAAG
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- GTATACAAAAACTCAACATCGACTTCTTT.....................
ET0128482      <-- GTATACAAAAACTCAACATCGACTTCTTTGTCCTCAGTAAGGTCCACAAG
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1501   -   1551
RU05879        --> AGCATGAGGATCTGTTTGAACATTGATTTCGATCACACGGTCCTTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- AGCATGAGGATCTGTTTGAACATTGATTTCGATCACACGGTCCTTGTTGT
RH24AB163      <-- AACATGAGGATCTGTTTGAACATTGATTTCGATCACACGGTCCTTGTTGT
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- AGCATGAGGATCTGTTTGAACATTGATTTCGATCACACGGTCCTTGTTGT
ET0124095      <-- ......................TTGATTTCGATCACACGGTCCTTGTTGT
CT0014236      <-- .................................................T
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1551   -   1601
RU05879        --> ACAAGATATCAAAATGGATGTGCTTATAGAGGTAGGTCTTGTACTCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ACAAG.............................................
ET0124095      <-- ACAAGATATCAAAATGGATGTGCTTATAGAGGTAGGTCTTGTACTCGCTT
CT0014236      <-- ACAAGATATCAAAATGGATGTGCTTATAGAGGTAGGTCTTGTACTCGCTT
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1601   -   1651
RU05879        --> GGGTCCTTGTTTTCCTTGTCGACCTTCCCAATGAAACCCCAGATGGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- GGGTCCTTGTTTTCCTTGTCGACCTTCCCAATGAAACCCCAGATGGGCAA
CT0014236      <-- GGGTCCTTGTTTTCCTTGTCGACCTTCCCAATGAAACCCCAGATGGGCAA
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1651   -   1701
RU05879        --> GTCATCATAATACATTTGAAAGTAATAGTCCTTGTTCACAGCAGATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- GTCATCATAATACATTTGAAAGTAATAGTCCTTGTTCACAGCAGATCTGA
CT0014236      <-- GTCATCATAATACATTTGAAAGTAATAGTCCTTGTTCACAGCAGATCTGA
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ................................................GA
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1701   -   1751
RU05879        --> ACTTGGCCACTTCTTCCTTCTTGAGAGTCCTTTTGCAAACCTGTTCCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ACTTGGCCACTTCTTCCTTCTTGAGAGTCCTTTTGCAAACCTGTTCCGAA
CT0014236      <-- ACTTGGCCACTTCTTCCTTCTTGAGAGTCCTTTTGCAAACCTGTTCCGAA
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ACTTGGCCACTTCTTCCTTCTTGAGAGTCCTTTTGCAAACCTGTTCCGAA
CT0047115      --> ..................................................
ET0121226      --> ..................................................

               1751   -   1801
RU05879        --> TCTTTATGTTTCAGGAACTCAAGCTTGTAAGGGGCGCTGACTAAACGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- TCTTTATGTTTCAGGAACTCAAGCT.........................
CT0014236      <-- TCTTTATGTTTCAGGAACTC..............................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> TCTTTATGTTTCAGGAACTCAAGCTTGTAAGGGGCGCTGACTAAACGATC
CT0047115      --> .........TTCAGGAACTCAAGCTTGTAAGGGGCGCTGACTAAACGATC
ET0121226      --> ..................................................

               1801   -   1851
RU05879        --> CCCATTCAATACTTCACCAAGAGCTTCCTTTTTCTCTTTAACCGCATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> CCCATTCAATACTTCACCAAGAGCTTCCTTTTTCTCTTTAACCGCATCTG
CT0047115      --> CCCATTCAATACTTCACCAAGAGCTTCCTTTTTCTCTTTAACCGCATCTG
ET0121226      --> ..................................................

               1851   -   1901
RU05879        --> GTGAGCAGAATGGGAGATCAAAGTACCTGTAGGTTTCACTGGGGTTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> GTGAGCAGAATGGGAGATCAAAGTACCTGTAGGTTTCACTGGGGTTGTGA
CT0047115      --> GTGAGCAGAATGGGAGATCAAAGTACCTGTAGGTTTCACTGGGGTTGTGA
ET0121226      --> ..................CAAAGTACCTGTAGGTTTCACTGGGGTTGTGA

               1901   -   1951
RU05879        --> AAGGGTCCGACCTTGTTGGCGTAGAGCGGGACTGCATCTCCTTCTTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> AAGGGTCCGACCTTGTTGGCGTAGAGCGGGACTGCATCTCCTTCTTTGTA
CT0047115      --> AAGGGTCCGACCTTGTTGGCGTAGAGCGGGACT.................
ET0121226      --> AAGGGTCCGACCTTGTTGGCGTAGAGCGGGACTGCATCTCCTTCTTTGTA

               1951   -   2001
RU05879        --> ACGATGATTGGAGGCGTCGGACGTGACCAGATCTGCAGCGCCGCACAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ACGATG............................................
CT0047115      --> ..................................................
ET0121226      --> ACGATGATTGGAGGCGTCGGACGTGACCAGATCTGCAGCGCCGCACAGGA

               2001   -   2051
RU05879        --> TCAGAAAGGCGATGATGACTGGTACTCCCACAGCCATAGTCTTGCCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- ..................................................
CT0118424      <-- ..................................................
ET0012768      <-- ..................................................
CT0083318      <-- ..................................................
ET0008394      <-- ..................................................
CT0014018      <-- ..................................................
CT0024488      <-- ..................................................
ET0035355      <-- ..................................................
ET0066635      <-- ..................................................
ET0089815      <-- ..................................................
ET0012042      <-- ..................................................
ET0015163      <-- ..................................................
ET0016283      <-- ..................................................
ET0021709      <-- ..................................................
ET0054664      <-- ..................................................
ET0025733      <-- ..................................................
ET0134700      <-- ..................................................
ET0118902      <-- ..................................................
ET0009871      <-- ..................................................
CT0084647      <-- ..................................................
CT0072749      <-- ..................................................
CT0072632      <-- ..................................................
CT0075026      <-- ..................................................
ET0004797      <-- ..................................................
CT0071996      <-- ..................................................
CT0029207      <-- ..................................................
ET0047675      <-- ..................................................
ET0114299      <-- ..................................................
ET0037326      <-- ..................................................
ET0099607      <-- ..................................................
CT0085268      <-- ..................................................
RH16M130       <-- ..................................................
RH24AB163      <-- ..................................................
CT0126154      <-- ..................................................
CT0125166      <-- ..................................................
ET0000877      <-- ..................................................
ET0128482      <-- ..................................................
ET0124095      <-- ..................................................
CT0014236      <-- ..................................................
CT0133132      --> ..................................................
ET0056393      --> ..................................................
CT0127258      --> ..................................................
CT0111811      --> ..................................................
CT0006022      --> ..................................................
ET0132177      --> ..................................................
ET0137231      --> ..................................................
CT0009613      --> ..................................................
CT0093798      --> ..................................................
CT0013075      --> ..................................................
ET0068266      --> ..................................................
ET0087401      --> ..................................................
ET0073477      --> ..................................................
ET0007516      --> ..................................................
ET0061242      --> ..................................................
CT0020887      --> ..................................................
CT0005236      --> ..................................................
CT0007961      --> ..................................................
CT0047115      --> ..................................................
ET0121226      --> TCAGAAAGGCGATGATGACTGGTACTCCCACAGCCATAGTCTTGCCCATT

               2051   -   2101
RU05879        --> CTCTCTCTCTCTCTGGCTCTGCGTTTCTCTCCGTCTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0119087      <-- .........................................
CT0118424      <-- .........................................
ET0012768      <-- .........................................
CT0083318      <-- .........................................
ET0008394      <-- .........................................
CT0014018      <-- .........................................
CT0024488      <-- .........................................
ET0035355      <-- .........................................
ET0066635      <-- .........................................
ET0089815      <-- .........................................
ET0012042      <-- .........................................
ET0015163      <-- .........................................
ET0016283      <-- .........................................
ET0021709      <-- .........................................
ET0054664      <-- .........................................
ET0025733      <-- .........................................
ET0134700      <-- .........................................
ET0118902      <-- .........................................
ET0009871      <-- .........................................
CT0084647      <-- .........................................
CT0072749      <-- .........................................
CT0072632      <-- .........................................
CT0075026      <-- .........................................
ET0004797      <-- .........................................
CT0071996      <-- .........................................
CT0029207      <-- .........................................
ET0047675      <-- .........................................
ET0114299      <-- .........................................
ET0037326      <-- .........................................
ET0099607      <-- .........................................
CT0085268      <-- .........................................
RH16M130       <-- .........................................
RH24AB163      <-- .........................................
CT0126154      <-- .........................................
CT0125166      <-- .........................................
ET0000877      <-- .........................................
ET0128482      <-- .........................................
ET0124095      <-- .........................................
CT0014236      <-- .........................................
CT0133132      --> .........................................
ET0056393      --> .........................................
CT0127258      --> .........................................
CT0111811      --> .........................................
CT0006022      --> .........................................
ET0132177      --> .........................................
ET0137231      --> .........................................
CT0009613      --> .........................................
CT0093798      --> .........................................
CT0013075      --> .........................................
ET0068266      --> .........................................
ET0087401      --> .........................................
ET0073477      --> .........................................
ET0007516      --> .........................................
ET0061242      --> .........................................
CT0020887      --> .........................................
CT0005236      --> .........................................
CT0007961      --> .........................................
CT0047115      --> .........................................
ET0121226      --> CTCTCTCTCTCTCTGGCTCTGCGTTTCTCTCCGTCTTCTCT