SNPs of unigene RU05997
               1      -     51
RU05997        --> TGGGAAGTTTGTGGAGTTTTATGGGGAAGGCATGAGTGAATTGTCATTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> TGGGAAGTTTGTGGAGTTTTATGGGGAAGGCATGAGTGAATTGTCATTAG
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               51     -    101
RU05997        --> CTGACCGTGCTACTATTGCCAACATGTCTCCTGAGTATGGTGCAACCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> CTGACCGTGCTACTATTGCCAACATGTCTCCTGAGTATGGTGCAACCATG
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               101    -    151
RU05997        --> GGCTTCTTTCCTGTCGATCATGTCACGCTGCAATATCTAAAGCTAACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..........................................CTAACAGG
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> GGCTTCTTTCCTGTCGATCATGTCACGCTGCAATATCTAAAGCTAACAGG
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               151    -    201
RU05997        --> CAGAACTGCTGACACTGTTGCTATGATAGAATCTTATTTACGGGCTAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- CAGAACTGCTGACACTGTTGCTATGATAGAATCTTATTTACGGGCTAATA
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> CAGAACTGCTGACACTGTTGCTATGATAGAATCTTATTTACGGGCTAATA
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               201    -    251
RU05997        --> AGATGTTTGTGGACTACAGTGAGCCCCAGATAGAGAGAGTATACTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- AGATGTTTGTGGACTACAGTGAGCCCCAGATAGAGAGAGTATACTCTGCT
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> AGATGTTCGTGGACTACAGTGAcg..........................
CT0071792      --> ...............................................GCT
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               251    -    301
RU05997        --> AATCTTGAGCTAAAACTTGAGGATGTGGAGCCTTGCATATCAGGGCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- AATCTTGAGCTAAAACTTGAGGATGTGGAGCCTTGCATATCAGGGCCAAA
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> AATCTTGAGCTAAAACTTGAGGATGTGGAGCCTTGCATATCAGGGCCAAA
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               301    -    351
RU05997        --> GAGGCCACATGATCGTGTTCCTCTGAAA-GAAATGAAACTGGATTGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- GAGGCCACATGATCGTGTTCCTCTGAAA-GAAATGAAAGTGGATTGGCAT
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> GAGGCCACATGATCGTGTTCCTCTGAAAAGAAATGAAACTGGATTGGCAT
CT0059443      --> ................GTTCCTCTGAAA-GAAATGAAACTGGATTGGCAT
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               351    -    401
RU05997        --> GCATGCCTTGACAATAGAGTTGGATTTAAGGGTTTTGCTGTGCCAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- GCATGCCTTGA.......................................
ET0138660      <-- ......CTTGACAATAGAGTTGGATTTAAGGGTTTTGCTGTGCCAAAGGA
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> GCATGCCTTGACAATAGAGTTGGATTT.......................
CT0059443      --> GCATGCCTTGACAATAGAGTTGGATTTAAGGGTTTTGCTGTGCCAAAGGA
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               401    -    451
RU05997        --> ATCTCAAAAGAAAGTTGTAGAGTTCTCATTTCATGGAATCCCTGCACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ATCTCAAAAGAAAGTTGTAGAGTTCTCATTTCATGGAATCCCTGCACAGC
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ATCTCAAAAGAAAGTTGTAGAGTTCTCATTTCATGGAATCCCTGCACAGC
ET0034417      --> ...................GAGTTCTCATTTCATGGAATCCCTGCACAGC
ET0016112      --> ..............................................CAGC
ET0019161      --> ..............................................CAGC
ET0020887      --> ..............................................CAGC
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               451    -    501
RU05997        --> TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
ET0102231      <-- .....CATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
RH21V82        <-- ...................AATTGCAGCTATTACCAGTTGCACAAACACC
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> TTAGGCA...........................................
ET0034417      --> TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
ET0016112      --> TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
ET0019161      --> TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
ET0020887      --> TTAGGCATGGAGATGTCGTAATTGCAGCTATTACCAGTTGCACAAACACC
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               501    -    551
RU05997        --> TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAA-GCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAA-GCTT
ET0102231      <-- TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAAAGCTT
RH21V82        <-- TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGCTGCAAAGAAA-GCTT
ET0087240      <-- ..........................................AAA-GCTT
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAA-GCTT
ET0016112      --> TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAA-GCTT
ET0019161      --> TCAAATCCTAGTGTAATGCTAGG-GCTGCCTTGGTTGCAAAGAAA-GCTT
ET0020887      --> TCAAATCCTAGTGTAATGCTAGGAGCTGCCTTGGTTGCAAAGAAA-GCTT
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               551    -    601
RU05997        --> GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCT.......
ET0102231      <-- GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
RH21V82        <-- GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCA
ET0087240      <-- GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCA
CT0100365      <-- .......................CCATGGATTAAGACTAGTCTTGCGCCA
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
ET0016112      --> GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
ET0019161      --> GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
ET0020887      --> GTGAATTAGGATTGGAGGTCAAGCCATGGATTAAGACTAGTCTTGCGCCG
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               601    -    651
RU05997        --> GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- GGCTCTGGGGTTGTA-CCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
RH21V82        <-- GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
ET0087240      <-- GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
CT0100365      <-- GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
ET0016112      --> GGCTCTGGGGTTGTAACCAAATACTTGGAAAAG-GTGGGTTGCAGAAGTA
ET0019161      --> GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
ET0020887      --> GGCTCTGGGGTTGTAACCAAATACTTGGAAAAGAGTGGGTTGCAGAAGTA
CT0069901      --> ............................AAAAGAGTGGGTTGCAGAAGTA
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               651    -    701
RU05997        --> TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGATGCACCACATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGAatagacaacc...
RH21V82        <-- TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGATGCACCACATGCA
ET0087240      <-- TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGATGCACCACATGCA
CT0100365      <-- TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGATGCACCACATGCA
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> TCTGAATCAGCTAGGATTTAATATCG........................
ET0019161      --> TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGA.............
ET0020887      --> TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGA.............
CT0069901      --> TCTGAATCAGCTAGGATTTAATATCGTTGGGTATGGATGCACCACATGCA
CT0130877      --> ......................ATCGTTGGGTATGGATGCACCACATGCA
CT0134265      --> ......................ATCGTTGGGTATGGATGCACCACATGCA
CT0134359      --> ......................ATCGTTGGGTATGGATGCACCACATGCA
ET0094442      --> ..................................GGATGCACCACATGCA
ET0100032      --> ..................................GGATGCACCACATGCA
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               701    -    751
RU05997        --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
ET0087240      <-- TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
CT0100365      <-- TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
CT0130877      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
CT0134265      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
CT0134359      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
ET0094442      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
ET0100032      --> TTGGAAATTCAGGAGATATTGATGAAGCAGTGGCATCAGCTATTACGGAA
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               751    -    801
RU05997        --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
ET0087240      <-- AATGATATTGTAGCTTCAGC..............................
CT0100365      <-- AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
CT0130877      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
CT0134265      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
CT0134359      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTT......
ET0094442      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
ET0100032      --> AATGATATTGTAGCTTCAGCCGTATTATCTGGAAATAGGAATTTTGAGGG
ET0052589      --> ............................CTGGAAATAGGAATTTTGAGGG
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               801    -    851
RU05997        --> CCGTGTACATCCTTTAACACGGGCTAATTATCTTGCTTCTCCTCCTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- CCGTGT............................................
ET0087240      <-- ..................................................
CT0100365      <-- CCGTG.............................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> CCGTGTACATCCTTTAACACGG............................
CT0130877      --> CCGTGTACATCCTTTAACACGGGCTAATTAT...................
CT0134265      --> CCGTGTACATCCTTTAACACGGGCTAATTAT...................
CT0134359      --> ..................................................
ET0094442      --> CCGTGTACATCCTTTAACACGGGCTAATTATCTTGCTTCTCCTCCTCTTG
ET0100032      --> CCGTGTACATCCTTTAACACGGGCTAATTATCTTGCTTCTCCTCCTCTTG
ET0052589      --> CCGTGTACATCCTTTAACACGGGCTAATTATCTTGCTTCTCCTCCTCTTG
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               851    -    901
RU05997        --> TGGTTGCTTATGCTCTTGCTGGCACGGTGGATATTGATTTTGACACTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> TGGTTGCTTATGCTCTTGCTGGCACGGTGGATATTGATTTTGACACTGAA
ET0100032      --> TGGTTGCTTATGCTCTTGCTGGCACGGTGGATATTGATTTTGACACTGAA
ET0052589      --> TGGTTGCTTATGCTCTTGCTGGCACGGTGGATATTGATTTTGACACTGAA
ET0043832      --> ..........................................ACACTGAA
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               901    -    951
RU05997        --> CCTA-TAGGGG-T-GGGAAAAGATGGAAAGAAGATATTTTT-CAGGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ........GGG-T-GGGAAAAGATGGAAAGAAGATATTTTT-CAGGGATA
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> CCTAGTAGGGG-T-GGGAAAAG............................
ET0100032      --> CCTAGTAGGGGGTAGGGAAAAG............................
ET0052589      --> CCTA-TAGGGG-T-GGGAAAAGATGGAAAGAAGATATTTTTTCAGGGATA
ET0043832      --> CCTA-TAGGGG-T-GGGAAAAGATGGAAAGAAGATATTTTT-CAGGGATA
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               951    -   1001
RU05997        --> TATGGCCATCTAATCAAGAAGTAGCAGAGGCTGTGCAATCAAATGTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- TATGGCCATCTAATCAAGAAGTAGCAGAGGCTGTGCAATCAAATGTGCTT
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> TATGGCCATCTAATCAAGAAGTAGCAGAGGCTGTGCAATCAAATGTGCTT
ET0043832      --> TATGGCCATCTAATCAAGAAGTAGCAGAGGCTGTGCAATCAAATGTGCTT
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1001   -   1051
RU05997        --> CCTCAGATGTTTATGGCTACATATGAAGCAATCACCAAAGGAAATCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- CCTCAGATGTTTATGGCTACATATGAAGCAATCACCAAAGGAAATCCCAT
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> CCTCAGATGTTTATGGCTAC..............................
ET0043832      --> CCTCACATGTTTATGGCTACATATGAAGCAATCACCAAAGGAAATCCCAT
ET0066622      --> ...CAGATGTTTATGGCTACATATGAAGCAATCACCAAAGGAAATCCCAT
ET0100678      --> ...CAGATGTTTATGGCTACATATGAAGCAATCACCAAAGGAAATCCCAT
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1051   -   1101
RU05997        --> GTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- GTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCAA
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> GTGGAATCAGTTATCTGTA...............................
ET0066622      --> GTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCAA
ET0100678      --> GTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACCCAA
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1101   -   1151
RU05997        --> AGTCCACTTACATACATGAGCCACCTTATTTTAAAGATATGACCATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- AGTCCA............................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> AGTCCACTTACATACATGAGCCACCTTATTTTAAAGATATGACCATGTCT
ET0100678      --> AGTCCACTTACATACATGAGCCACCTTATTTTAAAGATATGACCATGTCT
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1151   -   1201
RU05997        --> CCTCCCGGCGCTCATGGTGTGAAGAATGCTTACTGCTTGCTCAACTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> CCTCCCGGCGCTCATGGTGTGAAGAATGCTTACTGCTTGCTCAACTTTGG
ET0100678      --> CCTCCCGGCGCTCATGGTGTGAAGAATGCTTACTGCTTGCTCAACTTTGG
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1201   -   1251
RU05997        --> AGATAGTATTACAACTGACCACATCTcaccagctggtagcatccacaaag
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> AGATAGTATTACAACTGACCACATCT........................
ET0100678      --> AGATAGTATTACAACTGACCACATCT........................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1251   -   1301
RU05997        --> atagtccagcagccaaataccttatggagcgtggtgttgatagaagagAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ................................................AC
ET0018350      <-- ................................................AC
ET0023797      <-- ................................................AC
ET0023998      <-- ................................................AC
ET0024369      <-- ................................................AC
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1301   -   1351
RU05997        --> TTCAACTCTCATGGTAGTCGTCGTGGTAATGACTAAATAATGGCAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- TTCAACTCTTATGGTAGTCGTCGTGGTAATGATGAAATAATGGCAAGAGG
ET0018350      <-- TTCAACTCTTATGGTAGTCGTCGTGGTAATGATGAAATAATGGCAAGAGG
ET0023797      <-- TTCAACTCTTATGGTAGTCGTCGTGGTAATGATGAAATAATGGCAAGAGG
ET0023998      <-- TTCAACTCTTATGGTAGTCGTCGTGGTAATGATGAAATAATGGCAAGAGG
ET0024369      <-- TTCAACTCTTATGGTAGTCGTCGTGGTAATGATGAAATAATGGCAAGAGG
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1351   -   1401
RU05997        --> TACTTTTGCAAATATTCCCCTGGTCAATAAGTTTTTGAAAGGAGAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- TACTTTTGCAAATATTCGCCTGGTCAATAAGTTTT...............
ET0018350      <-- TACTTTTGCAAATATTCGCCTGGTCAATAAGTTTTTGAAAGGAGAAGTGG
ET0023797      <-- TACTTTTGCAAATATTCGCCTGGTCAATAAGTTTTTGAAAGGAGAAGTGG
ET0023998      <-- TACTTTTGCAAATATTCGCCTGGTCAATAAGTTTTTGAAAGGAGAAGTGG
ET0024369      <-- TACTTTTGCAAATATTCGCCTGGTCAATAAGTTTTTGAAAGGAGAAGTGG
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ............TATTCGCCTGGTCAATAAGTTTTTGATAGGAGAAGTGG
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1401   -   1451
RU05997        --> GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
ET0023797      <-- GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
ET0023998      <-- GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
ET0024369      <-- GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> GCCCCAAAACAATTCATCATCCCTCAGGAGAGAAAGTTTCCGTGTTTGAT
CT0067329      --> .........................AGGAGAGAAAGTTTCCGTGTTTGAT
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1451   -   1501
RU05997        --> GCTGTCATTAAGNACAAA-GTGAAGGGCATGACACAATCATTTTGGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
ET0023797      <-- GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
ET0023998      <-- GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
ET0024369      <-- GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
RH28AD135      <-- ............acaAAA-GTGAAGGGCATGACACAATCATTTTGGCTGG
CT0023245      <-- ..........................aCATGACACAATCATTTTGGCTGG
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
CT0067329      --> GCTGCCATGAAGTACAAAAGTGAAGGGCATGACACAATCATTTTGGCTGG
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1501   -   1551
RU05997        --> TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTAAGGGTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTA.........
ET0023797      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTA.........
ET0023998      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTA.........
ET0024369      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTA.........
RH28AD135      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTAAGGGTCCAA
CT0023245      <-- TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTAAGGGTCCAA
ET0101797      <-- ....................ttaCTCGTGATTGGGCTGCTAAGGGTCCAA
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> TGCTGAATATGGGAGTGGAAGT............................
CT0067329      --> TGCTGAATATGGGAGTGGAAGTTCTCGTGATTGGGCTGCTAAGGGTCCAA
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1551   -   1601
RU05997        --> TGCTAC-TGGGGGTGAAGGTTGTCATAGCAAAGAG-CTTTGAGCGCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- TGCTAC-TGGGGGTGAAGGCTGTCATAGCAAAGAG-CTTTGAGCGCATTC
CT0023245      <-- TGCTAC-TGGGGGTGAAGGCTGTCATAGCAAAGAG-CTTTGAGCGCATTC
ET0101797      <-- TGCTAC-TGGGGGTGAAGGCTGTCATAGCAAAGAG-CTTTGAGCGCATTC
CT0078333      <-- ...............AAGGCTGTCATAGCAAAGAG-CTTTGAGCGCATTC
CT0065165      <-- ....................TGTCATAGCAAAGAG-CTTTGAGCGCATTC
ET0099609      <-- .....................................TTTGAGCGCATTC
CT0103872      <-- ...............................................TTC
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> TGCTACGTGGGGGTGAAGGCTGTCATAGCAAAGAGTCTTTGAGCGCATTC
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1601   -   1651
RU05997        --> ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCA-GG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
CT0023245      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
ET0101797      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
CT0078333      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
CT0065165      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
ET0099609      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
CT0103872      <-- ACCGCAGTAATCTTG-TGGGCA-TGGGTATCATTCCCCTATGCTTCAAGG
CT0093720      <-- ................................TTCCCCTATGCTTCAAGG
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ACCGCAGTAATCTTGGTGGGCAGTGGGTAT....................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1651   -   1701
RU05997        --> CTGGGGAGGATGCTGAAACTC-TTGGATTGACTGGGGA-GG-AACGC-TA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGA-GG-AACGC-TA
CT0023245      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGACGGTAACGCCTA
ET0101797      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGA-GG-AACGC-TA
CT0078333      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGA-GG-AACGC-TA
CT0065165      <-- CTGGGGAGGATGCTGAAACTC-TTGGATTGACTGGGGA-GG-AACGC-TA
ET0099609      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGA-GG-AACGC-TA
CT0103872      <-- CTGGGGAGGATACTGAAACTC-TTGGATTGACTGGTGA-GG-AACGC-TA
CT0093720      <-- CTGGGGAGGATGCTGAAACTC-TTGGATTGACTGGGGA-GG-AACGC-TA
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ...............AAACTCGTTGGATTGACTGGTGA-GG-AACGC-TA
CT0121484      --> ...........................TTGACTGGGGA-GG-AACGC-TA
ET0136293      --> .........................atTTGACTGGGGA-GG-AACGC-TA
ET0048288      --> ..............................ACTGGTGA-GG-AACGC-TA
CT0136677      --> .................................ggtGA-GG-AACGC-TA
CT0136875      --> .................................ggtGA-GG-AACGC-TA
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1701   -   1751
RU05997        --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0023245      <-- CACCcatcac........................................
ET0101797      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0078333      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCG.........
CT0065165      <-- CACCcccagtagcattggaccc............................
ET0099609      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0103872      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0093720      <-- CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
ET0030141      <-- ....ATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0062368      <-- .........CCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0121484      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
ET0136293      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
ET0048288      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0136677      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
CT0136875      --> CACCATCGACCTTCCAAGCACTGTTAGCGAAATTAGACCCGGTCAGGATA
ET0114528      --> ...............................................ATA
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1751   -   1801
RU05997        --> TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGT............
CT0023245      <-- ..................................................
ET0101797      <-- TCACGGTGGTGACAG...................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0103872      <-- TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0093720      <-- TCACAGTG..........................................
ET0030141      <-- TCACAGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0062368      <-- TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0121484      --> TCACAGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
ET0136293      --> TCACAGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
ET0048288      --> TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0136677      --> TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0136875      --> TCACGGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
ET0114528      --> TCACAGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
ET0045522      --> ....aGTGGTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
ET0093011      --> ........GTGACAGACAATGGAAAGTCATTTGTATGTACGCTACGGTTT
CT0136449      --> ...............................................TTT
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1801   -   1851
RU05997        --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- GATACAGAGGTGGAGCTGGCTT............................
CT0103872      <-- GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-AT......
CT0093720      <-- ..................................................
ET0030141      <-- GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0062368      <-- GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0036218      <-- ...................CTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0037220      <-- ..................................................
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> GATACAGAGGTGGAGCTGGCTTTATTTTGATCACGGGAGGCTATTTTGCA
CT0121484      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0136293      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0048288      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0136677      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0136875      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0114528      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0045522      --> GATACAGAGG-GGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0093011      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
CT0136449      --> GATACAGAGGTGGAGCTGGCTT-ATTTTGATCACGG-AGGC-ATTTTGCA
ET0003081      --> ..................................GG-AGGC-ATTTTGCA
ET0003252      --> ..................................GG-AGGC-ATTTTGCA
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1851   -   1901
RU05997        --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
CT0062368      <-- ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
CT0036218      <-- ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
CT0037220      <-- .......ATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAG............
CT0121484      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0136293      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0048288      --> ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
CT0136677      --> ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
CT0136875      --> ATATGTCATCAGGAATCTGATCGGCGCAAAAGAGTTAGATCAATCATGAA
ET0114528      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0045522      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0093011      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
CT0136449      --> ATATGTCATCAGGAATCTGATCGGCGCAAA-GAGTTAGATCAATCATGAA
ET0003081      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0003252      --> ATATGTCATCAGGAATCTGATCGGTGCAAA-GAGTTAGATCAATCATGAA
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1901   -   1951
RU05997        --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTTT--CGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TT.................
CT0062368      <-- GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTT.......
CT0036218      <-- GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTTT-TCGTC
CT0037220      <-- GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTTT-TCGTC
CT0022390      <-- ..................................................
ET0139268      <-- ..................................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> GCTCTTGGCA........................................
ET0136293      --> GCTCTTGGCA........................................
ET0048288      --> GCTCTTGGCA........................................
CT0136677      --> GCTCTTGGCATGCAGGTGTAGGTCGCCCAATTTGTACCAATTTT--CGTC
CT0136875      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTTT-TCGTC
ET0114528      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-CTGTAACAATTT.......
ET0045522      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTAACAATTTT-TCGTC
ET0093011      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTAACAATTTT-TCGTC
CT0136449      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTACCAATTTT-TCGTC
ET0003081      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTAACAATTTTTTCGTC
ET0003252      --> GCTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTAACAATTTTTTCGTC
ET0062880      --> .CTCTTGGCATGCAGGTGTAGGTCGCC--A-TTGTAACAATTTT-TCGTC
RH43BL1        --> ...................................ACCAATTTT-TCGTC
RH50BT19       --> ...................................ACCAATTTT-TCGTC
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               1951   -   2001
RU05997        --> AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCT..........
CT0037220      <-- AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGTT
CT0022390      <-- tcaagtctATAATCAACATG-TGGG---GAAGAAAAGGCT-GTTTCAGTT
ET0139268      <-- ............................................TCAGTT
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> AAGTTCTAATAATCAACATG..............................
CT0136875      --> AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGT.
ET0114528      --> ..................................................
ET0045522      --> AAGTTCTAATAATCAACATGGTGGGGGaaa....................
ET0093011      --> AAGTTCTAATAATCAACATGGTGGGGGAAAAGAAAAGGCTTGTTTCAGT.
CT0136449      --> AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGTT
ET0003081      --> AAGTTCTAATAAT.....................................
ET0003252      --> AAGTTCTAATAAT.....................................
ET0062880      --> AAGTTCTAATAATCAACATGGTGGGGG-AAAGAAAAGGCTTGTTTCAGTT
RH43BL1        --> AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGTT
RH50BT19       --> AAGTTCTAATAATCAACATGGTGGGGG-GAAGAAAAGGCTTGTTTCAGTT
CT0091716      --> ..................................................
CT0095196      --> ..................................................
ET0110180      --> ..................................................
ET0009417      --> ..................................................

               2001   -   2051
RU05997        --> CTAGAGCTGAACCCAACTACGTCATCAATAAAGAAATATTGGGGATGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- CTAGAGCTGAACCCAACTACGTCATCAATAAAGAAATATTGGGGATGGG.
CT0022390      <-- CTAGAGCTGAACCCAACTACGTCATAAATAAAGAAATATTGGGGATGGGA
ET0139268      <-- CTAGAGCTGAACCCAACTACGTCATAAATAAAGAAATATTGGGGATGGGA
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- ..................................................
CT0010643      <-- ..................................................
CT0011569      <-- ..................................................
CT0012759      <-- ..................................................
CT0018596      <-- ..................................................
CT0025868      <-- ..................................................
CT0031179      <-- ..................................................
CT0035297      <-- ..................................................
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> CTAGAGCTGAACCCAACTACGTCATCAATAAAGAAATATTGGGGATGGGA
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> CTAGAGCTGAACCCAACTACGTCATAAATAAAGAAATATTGGGGATGGGA
RH43BL1        --> CTAGAGCTGAACCCAACTACGTCATCAATAAAGAAATATTGGGGATGGGA
RH50BT19       --> CTAGAGCTGAACCCAACTACGTCATCAATAAAGAAATATTGGGGATGGGA
CT0091716      --> ..........................................GGATGGGA
CT0095196      --> ..........................................GGATGGGA
ET0110180      --> ................................................GA
ET0009417      --> ..................................................

               2051   -   2101
RU05997        --> TTATTCTATTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................  Control
ET0138660      <-- ..................................................  Ethylene
ET0102231      <-- ..................................................  Ethylene
RH21V82        <-- ..................................................  WaterDS
ET0087240      <-- ..................................................  Ethylene
CT0100365      <-- ..................................................  Control
CT0070271      <-- ..................................................  Control
ET0009985      <-- ..................................................  Ethylene
ET0018350      <-- ..................................................  Ethylene
ET0023797      <-- ..................................................  Ethylene
ET0023998      <-- ..................................................  Ethylene
ET0024369      <-- ..................................................  Ethylene
RH28AD135      <-- ..................................................  WaterDS
CT0023245      <-- ..................................................  Control
ET0101797      <-- ..................................................  Ethylene
CT0078333      <-- ..................................................  Control
CT0065165      <-- ..................................................  Control
ET0099609      <-- ..................................................  Ethylene
CT0103872      <-- ..................................................  Control
CT0093720      <-- ..................................................  Control
ET0030141      <-- ..................................................  Ethylene
CT0062368      <-- ..................................................  Control
CT0036218      <-- ..................................................  Control
CT0037220      <-- ..................................................  Control
CT0022390      <-- TTATTCTAGTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Control
ET0139268      <-- TTATTCTAGTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Ethylene
ET0027123      <-- .........TTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Ethylene
ET0003387      <-- ..........TTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Ethylene
CT0009414      <-- ..................................................  Control
CT0010643      <-- ..................................................  Control
CT0011569      <-- ..................................................  Control
CT0012759      <-- ..................................................  Control
CT0018596      <-- ..................................................  Control
CT0025868      <-- ..................................................  Control
CT0031179      <-- ..................................................  Control
CT0035297      <-- ..................................................  Control
CT0037059      --> ..................................................  Control
CT0071792      --> ..................................................  Control
CT0059443      --> ..................................................  Control
ET0034417      --> ..................................................  Ethylene
ET0016112      --> ..................................................  Ethylene
ET0019161      --> ..................................................  Ethylene
ET0020887      --> ..................................................  Ethylene
CT0069901      --> ..................................................  Control
CT0130877      --> ..................................................  Control
CT0134265      --> ..................................................  Control
CT0134359      --> ..................................................  Control
ET0094442      --> ..................................................  Ethylene
ET0100032      --> ..................................................  Ethylene
ET0052589      --> ..................................................  Ethylene
ET0043832      --> ..................................................  Ethylene
ET0066622      --> ..................................................  Ethylene
ET0100678      --> ..................................................  Ethylene
CT0013723      --> ..................................................  Control
CT0067329      --> ..................................................  Control
CT0123130      --> ..................................................  Control
CT0121484      --> ..................................................  Control
ET0136293      --> ..................................................  Ethylene
ET0048288      --> ..................................................  Ethylene
CT0136677      --> ..................................................  Control
CT0136875      --> ..................................................  Control
ET0114528      --> ..................................................  Ethylene
ET0045522      --> ..................................................  Ethylene
ET0093011      --> ..................................................  Ethylene
CT0136449      --> TTATTCTATTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGG.....  Control
ET0003081      --> ..................................................  Ethylene
ET0003252      --> ..................................................  Ethylene
ET0062880      --> TTATTCTAGTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Ethylene
RH43BL1        --> TTATTCTATTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGACATG  WaterDS
RH50BT19       --> TTATTCTATTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGACATG  WaterDS
CT0091716      --> TTATTCTAGTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Control
CT0095196      --> TTATTCTAGTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Control
ET0110180      --> TTATTCTATTTTTAGAATGTTCAGGGGATATAGAGCTTGCATTGGTCATG  Ethylene
ET0009417      --> .................................AGCTTGCATTGGTCATG  Ethylene

               2101   -   2151
RU05997        --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATACTTACTTTGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT
ET0139268      <-- ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT
ET0027123      <-- ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATACTTACTTTGGAAT
ET0003387      <-- ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT
CT0009414      <-- .....................................CTTACTTTGGAAT
CT0010643      <-- .....................................CTTACTTTGGAAT
CT0011569      <-- ....................................gCTTACTTTGGAAT
CT0012759      <-- .....................................CTTACTTTGGAAT
CT0018596      <-- .....................................CTTACTTTGGAAT
CT0025868      <-- .....................................CTTACTTTGGAAT
CT0031179      <-- .....................................CTTACTTTGGAAT
CT0035297      <-- .....................................CTTACTTTGGAAT
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTAT..............
RH43BL1        --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATACTTACTTTGGAAT
RH50BT19       --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATACTTACTTTGGAAT
CT0091716      --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT
CT0095196      --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT
ET0110180      --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATACTTACTTTGGAAT
ET0009417      --> ATGAAAATTTTCCAATATTTCTTTGTCATTGGTTATGCTTACTTTGGAAT

               2151   -   2201
RU05997        --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- TGAATTGTTAAAAATTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
ET0139268      <-- TGAATTGTTAAAAATTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
ET0027123      <-- TGAATTGTTAAAAATTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTac.
ET0003387      <-- TGAATTGTTAAAAATTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTC..
CT0009414      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0010643      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0011569      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0012759      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0018596      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0025868      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0031179      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0035297      <-- TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGT......
RH50BT19       --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGT......
CT0091716      --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
CT0095196      --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
ET0110180      --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTCAA
ET0009417      --> TGAATTGTTAAAA-TTTGGCTTTAATGGAGGTGAGGGTGAAGGTACTC..

               2201   -   2251
RU05997        --> TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ..................................................
ET0138660      <-- ..................................................
ET0102231      <-- ..................................................
RH21V82        <-- ..................................................
ET0087240      <-- ..................................................
CT0100365      <-- ..................................................
CT0070271      <-- ..................................................
ET0009985      <-- ..................................................
ET0018350      <-- ..................................................
ET0023797      <-- ..................................................
ET0023998      <-- ..................................................
ET0024369      <-- ..................................................
RH28AD135      <-- ..................................................
CT0023245      <-- ..................................................
ET0101797      <-- ..................................................
CT0078333      <-- ..................................................
CT0065165      <-- ..................................................
ET0099609      <-- ..................................................
CT0103872      <-- ..................................................
CT0093720      <-- ..................................................
ET0030141      <-- ..................................................
CT0062368      <-- ..................................................
CT0036218      <-- ..................................................
CT0037220      <-- ..................................................
CT0022390      <-- TGTAGTTTGTTCA.....................................
ET0139268      <-- TGTAGTTTGttc......................................
ET0027123      <-- ..................................................
ET0003387      <-- ..................................................
CT0009414      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0010643      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0011569      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0012759      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0018596      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0025868      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0031179      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0035297      <-- TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
CT0037059      --> ..................................................
CT0071792      --> ..................................................
CT0059443      --> ..................................................
ET0034417      --> ..................................................
ET0016112      --> ..................................................
ET0019161      --> ..................................................
ET0020887      --> ..................................................
CT0069901      --> ..................................................
CT0130877      --> ..................................................
CT0134265      --> ..................................................
CT0134359      --> ..................................................
ET0094442      --> ..................................................
ET0100032      --> ..................................................
ET0052589      --> ..................................................
ET0043832      --> ..................................................
ET0066622      --> ..................................................
ET0100678      --> ..................................................
CT0013723      --> ..................................................
CT0067329      --> ..................................................
CT0123130      --> ..................................................
CT0121484      --> ..................................................
ET0136293      --> ..................................................
ET0048288      --> ..................................................
CT0136677      --> ..................................................
CT0136875      --> ..................................................
ET0114528      --> ..................................................
ET0045522      --> ..................................................
ET0093011      --> ..................................................
CT0136449      --> ..................................................
ET0003081      --> ..................................................
ET0003252      --> ..................................................
ET0062880      --> ..................................................
RH43BL1        --> ..................................................
RH50BT19       --> ..................................................
CT0091716      --> TGTAGTTTGttc......................................
CT0095196      --> TGTAGTTTGttc......................................
ET0110180      --> TGTAGTTTGCTCATTTGTAGTCTCCTTTTTAACTTTTCTTGCGAAGAGCT
ET0009417      --> ..................................................

               2251   -   2301
RU05997        --> ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0105039      <-- ............................................
ET0138660      <-- ............................................
ET0102231      <-- ............................................
RH21V82        <-- ............................................
ET0087240      <-- ............................................
CT0100365      <-- ............................................
CT0070271      <-- ............................................
ET0009985      <-- ............................................
ET0018350      <-- ............................................
ET0023797      <-- ............................................
ET0023998      <-- ............................................
ET0024369      <-- ............................................
RH28AD135      <-- ............................................
CT0023245      <-- ............................................
ET0101797      <-- ............................................
CT0078333      <-- ............................................
CT0065165      <-- ............................................
ET0099609      <-- ............................................
CT0103872      <-- ............................................
CT0093720      <-- ............................................
ET0030141      <-- ............................................
CT0062368      <-- ............................................
CT0036218      <-- ............................................
CT0037220      <-- ............................................
CT0022390      <-- ............................................
ET0139268      <-- ............................................
ET0027123      <-- ............................................
ET0003387      <-- ............................................
CT0009414      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0010643      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0011569      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0012759      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0018596      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0025868      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0031179      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACCAAAAAAAAA
CT0035297      <-- ACTCTGAAAACCCCAAAATTATATTCTGAAACACC.........
CT0037059      --> ............................................
CT0071792      --> ............................................
CT0059443      --> ............................................
ET0034417      --> ............................................
ET0016112      --> ............................................
ET0019161      --> ............................................
ET0020887      --> ............................................
CT0069901      --> ............................................
CT0130877      --> ............................................
CT0134265      --> ............................................
CT0134359      --> ............................................
ET0094442      --> ............................................
ET0100032      --> ............................................
ET0052589      --> ............................................
ET0043832      --> ............................................
ET0066622      --> ............................................
ET0100678      --> ............................................
CT0013723      --> ............................................
CT0067329      --> ............................................
CT0123130      --> ............................................
CT0121484      --> ............................................
ET0136293      --> ............................................
ET0048288      --> ............................................
CT0136677      --> ............................................
CT0136875      --> ............................................
ET0114528      --> ............................................
ET0045522      --> ............................................
ET0093011      --> ............................................
CT0136449      --> ............................................
ET0003081      --> ............................................
ET0003252      --> ............................................
ET0062880      --> ............................................
RH43BL1        --> ............................................
RH50BT19       --> ............................................
CT0091716      --> ............................................
CT0095196      --> ............................................
ET0110180      --> ACTCTGAAAACCCCAAAATTATATTCTG................
ET0009417      --> ............................................