SNPs of unigene RU06193
               1      -     51
RU06193        --> TTTTAAGTAAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ........AAGATAAA-CT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0018928      <-- .......aagttatAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
ET0008776      <-- ........aagtatAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
ET0016713      <-- ........aagtatAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0122730      <-- ...........................CTTTCATTCAACTCTGAAATTTT
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> TTTTAAGTTATTTAAACTT-CTATCTGCTTTCATTCAACTCTGAAATTTT
CT0113461      --> ...aAAGTAATA-AAAACTAC-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0079745      --> ........AAGATAAA-CT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0111791      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0111925      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0112461      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0113480      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0115760      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0116471      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
ET0030006      --> ........AAGATAAA-CT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
ET0035547      --> ........AAGATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0114171      --> ......aagttATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0114422      --> .......aagtATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0114492      --> ......aagtaATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
CT0114934      --> .......aagtATAAAACT-C-ATCTGCTTTCATTCAACTCTGAAATTTT
ET0038249      --> ............................TTTCATTCAACTCTGAAATTTT
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               51     -    101
RU06193        --> ACATCGCAAAACTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0018928      <-- ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
ET0008776      <-- ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGG......
ET0016713      <-- ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0122730      <-- ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0113461      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0079745      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0111791      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0111925      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0112461      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0113480      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0115760      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0116471      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
ET0030006      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
ET0035547      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0114171      --> ACATCGCAAAACTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0114422      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0114492      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0114934      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
ET0038249      --> ACATCGCAAA-CTGTGTTTCCCAGAAACCCTAGAGAGACTAAGGACATAG
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               101    -    151
RU06193        --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAA-TTAAAA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- -ATTTT-CAAG-A-CGAAAAAACAAAAAAGGAACTCTGAAA-TTAAAA-G
CT0018928      <-- -ATTTT-CAAG-A-CGAAAAAAcaaaaaaggaactctaaa..........
ET0008776      <-- ..................................................
ET0016713      <-- TATTTT-CAAGAA-CGAAAAAAcaaaaaaggaactctg............
CT0122730      <-- -ATTTT-CAAG-A-CGAAAAAACAAAAAAGGAACTCTGAAA-TTAAAA-G
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> -ATTTT-CAAG-A-CGAAAAAACAAAAAAGGAACTCTGAAA-TTAAAAAG
CT0113461      --> -ATTTT-CATG-AACGAAAAAA----AAAGGAACTCTGAAAATTAAAAAG
CT0079745      --> -ATTTT-CAAG-A-CGAAAAAAcaaaaaaggaactctg............
CT0111791      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAAATTAAAA-G
CT0111925      --> -ATTTT-CATG-A-CGAAAAAA----AA-GGAACTCTGAAA-TTAAAA-G
CT0112461      --> -ATTTT-CATG-A-CGAAAAAA----AA-GGAACTCTGAAA-TTAAAA-G
CT0113480      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGA-CTCTGAAA-TTAAAA-G
CT0115760      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGA-CTCTGAAA-TTAAAA-G
CT0116471      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGA-CTCTGAAA-TTAAAA-G
ET0030006      --> -ATTTT-CAAG-A-CGAAAAAACAAAAAAGGAACTCTGAAA-TTAAAAAG
ET0035547      --> -ATTTTTCATG-A-CGAAAAAA----AAAGGA-CTCTGAAAATTAAAA-G
CT0114171      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAA-TT......
CT0114422      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAA-TTAAAA-G
CT0114492      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAA-TTAAAA-G
CT0114934      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGAACTCTGAAA-TTAAAA-G
ET0038249      --> -ATTTT-CATG-A-CGAAAAAA----AAAGGA-CTCTGAAA-TTAAAA-G
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               151    -    201
RU06193        --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- TAAAAAAAGAAA-GAAAAAAA-GAA-CCTCCG--ATTATATt........
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- TAAAAAAAGAAA-GAAAAAAA-GAA-CCTCCG--ATTATATATTT-CTTC
ET0034761      <-- ..............gAAAAAAAGAA-CCTCCG--ATTATATATTT-CTTC
CT0057351      <-- ................AAAAAAGAA-CCTCCG--ATTATATATTTTCTTC
CT0071522      <-- ................AAAAAAGAA-CCTCCG--ATTATATATTT-CTTC
ET0006879      <-- ..............gtAAAAAAAAA-CCTCCGCGATTATATATTT-CTTC
CT0063721      <-- .........................................tTTT-TTTC
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> TAAAAAAAGAAA-AGAAAAAAAGAA-CCTCCG--ATTATATATTT-CTTC
CT0113461      --> TAAAAAA-GAAAACAAAAAAAAAAAACCTCCG--ATTATATATTT-CTTC
CT0079745      --> ..................................................
CT0111791      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0111925      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0112461      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0113480      --> TAAAAAA-GAAAACAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0115760      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0116471      --> TAAAAAA-GAAAACAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
ET0030006      --> TAAAAAAAGAAA-AGAAAAAAAGAA-CCTCCG--ATTATATATTT-CTTC
ET0035547      --> TAAAAAA-GAAAACAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0114171      --> ..................................................
CT0114422      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0114492      --> TAAAAAA-GAAAACAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0114934      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
ET0038249      --> TAAAAAA-GAAA-CAAAAAAAAAAA-CCTCCG--ATTATATATTT-CTTC
CT0114028      --> ..............gAAAAAAAGAA-CCTCCG--ATTATATATTT-CTTC
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               201    -    251
RU06193        --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0034761      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0057351      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0071522      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0006879      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0063721      <-- TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0113461      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0079745      --> ..................................................
CT0111791      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0111925      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0112461      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0113480      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0115760      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0116471      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0030006      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0035547      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0114171      --> ..................................................
CT0114422      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0114492      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0114934      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0038249      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
CT0114028      --> TTCAGCTGCAAAGAGACCTAAAATATACCCATAAAGAAGAAGAGATTTAC
ET0047611      --> ..........................................AGATTTAC
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               251    -    301
RU06193        --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
ET0034761      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTA.........
CT0057351      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
CT0071522      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTAc........
ET0006879      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0063721      <-- AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
ET0084346      <-- ...........TAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
CT0113461      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0079745      --> ..................................................
CT0111791      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0111925      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0112461      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0113480      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0115760      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCCCTCTC
CT0116471      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
ET0030006      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
ET0035547      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0114171      --> ..................................................
CT0114422      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCCCTCTC
CT0114492      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTATCCC-TCTC
CT0114934      --> AAGACTACCCCTAAACCA-CACTAGCCTCTCTTCCTCTCTATCCC-TCTC
ET0038249      --> AAGACTACCCCTAAA...................................
CT0114028      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
ET0047611      --> AAGACTACCCCTAAACCAACACTAGCCTCTCTTCCTCTCTACCCC-TCTC
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               301    -    351
RU06193        --> ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCC...............
ET0034761      <-- ..................................................
CT0057351      <-- ACTTCCTTCCCTTCCTAGCTG.............................
CT0071522      <-- ..................................................
ET0006879      <-- ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
CT0063721      <-- ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
ET0084346      <-- ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
CT0119799      <-- .....CTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
CT0119889      <-- .......TCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
CT0121295      <-- .......TCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
CT0122598      <-- .......TCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ACTTCCTTCCCT......................................
CT0113461      --> ACTTCCTTCCCTTC....................................
CT0079745      --> ..................................................
CT0111791      --> ACTTCCTTCCCT......................................
CT0111925      --> ACTTCCTTCCCTT.....................................
CT0112461      --> ACTTCCTTCCCTT.....................................
CT0113480      --> ACTTCCTTCCCT......................................
CT0115760      --> ACTTCCTTCCCT......................................
CT0116471      --> ACTTCCTTCCCT......................................
ET0030006      --> ACTTCCTTCCCTT.....................................
ET0035547      --> ACTTCCTTCCCT......................................
CT0114171      --> ..................................................
CT0114422      --> ACTTCCTTCCCTT.....................................
CT0114492      --> ACTTCCTTCCCTT.....................................
CT0114934      --> ACTTCCTTCCCTTCC...................................
ET0038249      --> ..................................................
CT0114028      --> ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
ET0047611      --> ACTTCCTTCCCTTCCTAGCTGGTGCTTTCTTCGCCGGCGACTTGACGCTT
ET0100374      --> ........................................gtaaggtttc
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               351    -    401
RU06193        --> CTCGGCTTCACAGTACGGGTGGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- CTCGGCTTCACAGTACGGGTGGG...........................
CT0063721      <-- CTCGGCTTCAC.......................................
ET0084346      <-- CTCGGCTTCACAGTACGGGTGGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
CT0119799      <-- CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
CT0119889      <-- CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
CT0121295      <-- CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
CT0122598      <-- CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
ET0047611      --> CTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
ET0100374      --> tTCGGCTTCACAGTACGGGTCGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
CT0020238      --> ..............gtgatTGGGTGCCTTCTTCGGTGTCGCTGCCTTCTT
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               401    -    451
RU06193        --> CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAG.................
CT0119799      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
CT0119889      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
CT0121295      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
CT0122598      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
ET0146700      <-- CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> CGGCGCTGGCTTGGCCGCCCTGGCCCGCCGGAGCCT..............
ET0047611      --> CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
ET0100374      --> CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
CT0020238      --> CGGCGCTGGCTTGGCCGCCCTGGCC-GCCGGAGCCTTCCTCCCAGGCGAT
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               451    -    501
RU06193        --> GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0119889      <-- GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0121295      <-- GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0122598      <-- GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0146700      <-- GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0087287      <-- ........CAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0096175      <-- ........CAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0097805      <-- ........CAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0103417      <-- ........CAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0121815      <-- ........CAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0068084      <-- ...........................................AGCTTGG
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0100374      --> GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0020238      --> GACCTGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
ET0067578      --> ....TGGTCAA-CGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0009164      --> .....GGTCAAACGTCCTCGCAGCCTTGGCTGGCTTCTCCTTAAGCTTGG
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               501    -    551
RU06193        --> GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0119889      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0121295      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0122598      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0146700      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0087287      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0096175      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0097805      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0103417      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0121815      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0068084      <-- GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGGGCAGCCTTGGTCTT
ET0072684      <-- .................................GGG-CAGCCTTGGTCTT
CT0109253      <-- ..............................................TCTT
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> GCTTGGG...........................................
ET0100374      --> GCTTGGGAGCTGCTGCCTTAGGCTTGGCA--CGGGG-CAGCCTTGGTCTT
CT0020238      --> GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0067578      --> GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0009164      --> GCTTGGGAGCTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
CT0100239      --> .........CTGCTGCCTTAGGCTTGGCAGCCGGGG-CAGCCTTGGTCTT
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               551    -    601
RU06193        --> GGCCGGAGCAGCCTTTGCCTTCGCGGGAGCAGCCTT-GGCCTTGGCCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- GGCCGGA...........................................
CT0119889      <-- GGCCGGA...........................................
CT0121295      <-- GGCCGGA...........................................
CT0122598      <-- GGCCGGA...........................................
ET0146700      <-- GGCCGGAGCAGCCTTTGCCTTCGCCGGAGCAGCCTT-GGCCTTCGCCGGA
ET0087287      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0096175      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0097805      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0103417      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0121815      <-- GGCCGGAGCAGCCTTTGCCTTAGCGGGAGCAGCCTT-GGCCTTGGCCGGA
CT0068084      <-- GGCCGGAGCAGCCTTTGCCTTAGCGGGAGCAGCCTT-GGCCTTGGCCGGA
ET0072684      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
CT0109253      <-- GGCCGGAGCAGCCTTTGCCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0064292      <-- ...........CCTTTGCCTTAGCGGGAGCAGCCTT-GGCCTTGGCCGGA
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> GGCCGGAGCAGCCTTTGCCTTCGCCGGAGCAGCCTT-GGCCTTCGCCGGA
CT0020238      --> GGCCGGAGCAGCCTTTGCCTTAGCGGGAGCAGCCTT..............
ET0067578      --> GGCCGGAGCAGCCTTTGCCTTCGCCGGAGCAGCCTT-GGCCTTCGCCGGA
CT0009164      --> GGCCGGAGCAGCCTTTGCCTTCGCCGGAGCAGCCTT-GGCCTTCGCCGGA
CT0100239      --> GGCCGGAGCAGCCTTTGCCTTAGCGGGAGCAGCCTT-GGCCTTGGCCGGA
ET0029707      --> ............CTTTGCCTTAGCGGGAGCAGCCTT-GGCCTTGGCCGGA
ET0104821      --> .................CCTTAGCCGGAGCAGCCTT-GGCCTTGGCCGGA
ET0082727      --> ..........................agtCAGCCTTTGGCCTTGGCCGGA
CT0118319      --> ..............................AGCCTT-GGCCTTGGCCGGA

               601    -    651
RU06193        --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTCGCCGCAGGCTT
ET0087287      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTG................
ET0096175      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTG................
ET0097805      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCtaggtcttttgt............
ET0103417      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTG................
ET0121815      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
CT0068084      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
ET0072684      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
CT0109253      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
ET0064292      <-- GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
CT0041504      <-- .........................................CGCAGGCTT
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTCGCCGCAGGCTT
CT0009164      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTCGCCGCAGGCTT
CT0100239      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
ET0029707      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
ET0104821      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
ET0082727      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT
CT0118319      --> GCAGCCGCCTTGGTCTTGGCCGGAGCAGGCTTTGCCTTGGCCGCAGGCTT

               651    -    701
RU06193        --> GGCTTTTGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- GGCTTTTGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
CT0068084      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
ET0072684      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCGGCGGCCTTAGCCTTGGCCG
CT0109253      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCGGCGGCCTTAGCCTTGGCCG
ET0064292      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
CT0041504      <-- GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCGGCGGCCTTAGCCTTGGCCG
CT0087314      <-- ..................................GCCTTAGCCTTGGCCG
CT0087768      <-- ...................................CCTTAGCCTTGGCCG
CT0090443      <-- ...................................CCTTAGCCTTGGCCG
CT0091359      <-- ...................................CCTTAGCCTTGGCCG
CT0092711      <-- ...................................CCTTAGCCTTGGCCG
CT0093183      <-- ...................................CCTTAGCCTTGGCCG
CT0093236      <-- ...................................CCTTAGCCTTGGCCG
CT0094923      <-- ...................................CCTTAGCCTTGGCCG
CT0095026      <-- ...................................CCTTAGCCTTGGCCG
CT0083378      <-- ......................................TAGCCTTGGCCG
CT0095682      <-- ......................................TAGCCTTGGCCG
CT0096263      <-- ......................................TAGCCTTGGCCG
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> GGCTTTTGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
CT0009164      --> GGCTTTTGGCTTCGGCTTTGGC............................
CT0100239      --> GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAG.........
ET0029707      --> GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
ET0104821      --> GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCGGCGGCCTTAGCCTTGGCCG
ET0082727      --> GGCTTTGGGCTTCGGCTTTGGCTTAGCAGCAGCGGCCTTAGCCTTGGCCG
CT0118319      --> GGCTTTGGGCTTCGGCTTgtgt............................

               701    -    751
RU06193        --> GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- GAGACTTGCTCGCCGCCTT...............................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- GAGACT............................................
CT0068084      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTT................
ET0072684      <-- GAGACTT...........................................
CT0109253      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTT................
ET0064292      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAG....................
CT0041504      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0087314      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0087768      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0090443      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0091359      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0092711      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0093183      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0093236      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0094923      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0095026      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0083378      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0095682      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0096263      <-- GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
ET0140373      <-- ......................CGACTTAG--TTTCCCTTTGGCTTCGCA
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> G.................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> GAGACTTGCTCGCCGCCTTGACCGA.........................
ET0104821      --> GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
ET0082727      --> GAGACTTGCTCGCCGCCTTGACCGACTTAGTCTTTCCCTTTGGCTTCGCA
CT0118319      --> ..................................................

               751    -    801
RU06193        --> GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- GCAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0087314      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0087768      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0090443      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0091359      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0092711      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0093183      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0093236      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0094923      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0095026      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0083378      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0095682      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0096263      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
ET0140373      <-- GGAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0065048      <-- gcaggCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> GCAGCCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCG-
ET0082727      --> GCAGGCTTGGCCTTGGGCTTGGCCGCGGCGGCAGGCTTCTTCTTGGCCGG
CT0118319      --> ..................................................

               801    -    851
RU06193        --> AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCT.......................
CT0087314      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0087768      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0090443      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0091359      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0092711      <-- AGCAGCAGTCGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0093183      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0093236      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0094923      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGACCGGTA
CT0095026      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0083378      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0095682      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0096263      <-- AGCAGCAG-CGGGGCTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
ET0140373      <-- AGCAGCAG-CGGG-CTTAGGTGGAGCTGCGGCGGACCGAGCCGAC-GG-A
CT0065048      <-- AGCAGCAG-CGGG-CTTGGGTGGAGCTGTGGCGGACCGAACCGAC-GG-A
ET0002717      <-- ....................................gccGCCGAC-GG-A
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> AGCAGC............................................
ET0082727      --> A.................................................
CT0118319      --> ..................................................

               851    -    901
RU06193        --> AT-CTTATA-GGAGCTTTTAACCTTGGCGAGCTTATCGGAGCTGACGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- AT-CTTATA-GGAGCTTTTt..............................
CT0087768      <-- ATtctttattaggtagtctttttt..........................
CT0090443      <-- AT-CTTATA-GGAGCTTTT...............................
CT0091359      <-- AT-CTTATA-GGAGCTTTT...............................
CT0092711      <-- AT-CTTATA-GGAGCTTTT...............................
CT0093183      <-- ATtctttattaggtagtcttttt...........................
CT0093236      <-- AT-CTTATA-GGAGCTTTT...............................
CT0094923      <-- ATCCTTATACGGAGCTTTT...............................
CT0095026      <-- AT-CTTATA-GGAGCTTTT...............................
CT0083378      <-- AT-CTTATA-GGAGCTTTT...............................
CT0095682      <-- AT-CTTATA-GGAGCTTTT...............................
CT0096263      <-- AT-CTTATA-GGAGCTTTTt..............................
ET0140373      <-- AT-CTTATA-GGAGCTTTTAACCTTGGCGAGCTTATCGGAGCTGACGAGC
CT0065048      <-- AT-CTTATA-GGAGCTTTTGACCTTGGCGAGCTTGTCGGAGCTGACGAGC
ET0002717      <-- AT-CTTATA-GGAGCTTTTAACCTTGGCGAGCTTATCGGAGCTGACGAGC
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               901    -    951
RU06193        --> TTCTTCAAATGGTAGAGCAGAAGCTTCTTGAAGTTTGGAGGGAGCTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................  Control
CT0018928      <-- ..................................................  Control
ET0008776      <-- ..................................................  Ethylene
ET0016713      <-- ..................................................  Ethylene
CT0122730      <-- ..................................................  Control
ET0034761      <-- ..................................................  Ethylene
CT0057351      <-- ..................................................  Control
CT0071522      <-- ..................................................  Control
ET0006879      <-- ..................................................  Ethylene
CT0063721      <-- ..................................................  Control
ET0084346      <-- ..................................................  Ethylene
CT0119799      <-- ..................................................  Control
CT0119889      <-- ..................................................  Control
CT0121295      <-- ..................................................  Control
CT0122598      <-- ..................................................  Control
ET0146700      <-- ..................................................  Ethylene
ET0087287      <-- ..................................................  Ethylene
ET0096175      <-- ..................................................  Ethylene
ET0097805      <-- ..................................................  Ethylene
ET0103417      <-- ..................................................  Ethylene
ET0121815      <-- ..................................................  Ethylene
CT0068084      <-- ..................................................  Control
ET0072684      <-- ..................................................  Ethylene
CT0109253      <-- ..................................................  Control
ET0064292      <-- ..................................................  Ethylene
CT0041504      <-- ..................................................  Control
CT0087314      <-- ..................................................  Control
CT0087768      <-- ..................................................  Control
CT0090443      <-- ..................................................  Control
CT0091359      <-- ..................................................  Control
CT0092711      <-- ..................................................  Control
CT0093183      <-- ..................................................  Control
CT0093236      <-- ..................................................  Control
CT0094923      <-- ..................................................  Control
CT0095026      <-- ..................................................  Control
CT0083378      <-- ..................................................  Control
CT0095682      <-- ..................................................  Control
CT0096263      <-- ..................................................  Control
ET0140373      <-- TTCTTCAAATGGTAGAGCAGAAGCTTCTTGAAGTTTGGAGGGAGCTGCTT  Ethylene
CT0065048      <-- TTCTTCAAAa........................................  Control
ET0002717      <-- TTCTTCAAATGGTAGAGCAGAAGCTTCTTGAAGTTTGGAGGGAGCTGCTT  Ethylene
CT0104157      <-- ......................................AGGGAGCTGGTT  Control
CT0104864      <-- ......................................AGGGAGCTGGTT  Control
CT0107427      <-- ......................................AGGGAGCTGGTT  Control
CT0107917      <-- ......................................AGGGAGCTGGTT  Control
CT0107602      <-- .................................................T  Control
ET0054783      <-- ..................................................  Ethylene
CT0039811      <-- ..................................................  Control
CT0039584      <-- ..................................................  Control
ET0093697      <-- ..................................................  Ethylene
CT0030071      --> ..................................................  Control
CT0113461      --> ..................................................  Control
CT0079745      --> ..................................................  Control
CT0111791      --> ..................................................  Control
CT0111925      --> ..................................................  Control
CT0112461      --> ..................................................  Control
CT0113480      --> ..................................................  Control
CT0115760      --> ..................................................  Control
CT0116471      --> ..................................................  Control
ET0030006      --> ..................................................  Ethylene
ET0035547      --> ..................................................  Ethylene
CT0114171      --> ..................................................  Control
CT0114422      --> ..................................................  Control
CT0114492      --> ..................................................  Control
CT0114934      --> ..................................................  Control
ET0038249      --> ..................................................  Ethylene
CT0114028      --> ..................................................  Control
ET0047611      --> ..................................................  Ethylene
ET0100374      --> ..................................................  Ethylene
CT0020238      --> ..................................................  Control
ET0067578      --> ..................................................  Ethylene
CT0009164      --> ..................................................  Control
CT0100239      --> ..................................................  Control
ET0029707      --> ..................................................  Ethylene
ET0104821      --> ..................................................  Ethylene
ET0082727      --> ..................................................  Ethylene
CT0118319      --> ..................................................  Control

               951    -   1001
RU06193        --> GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- GTGCT.............................................
CT0065048      <-- ..................................................
ET0002717      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
CT0104157      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
CT0104864      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
CT0107427      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
CT0107917      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
CT0107602      <-- GTGCTTCTCCTCGATGAACTTAGTGATCGCATACTGGCTCGAACCAGTCC
ET0054783      <-- ..................................................
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1001   -   1051
RU06193        --> TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
CT0104157      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
CT0104864      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
CT0107427      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
CT0107917      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
CT0107602      <-- TCTCCTTAAGAGTCACAATCGCATCCTTGATCATCTCTTCATAAGGAGGA
ET0054783      <-- ...............CAATCGCATCCTTGATCATCTCTTCATAAG-AGGA
CT0039811      <-- ..................................................
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1051   -   1101
RU06193        --> TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- TGAGTGGG..........................................
CT0104157      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
CT0104864      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
CT0107427      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
CT0107917      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
CT0107602      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCGGGCTTCTTGGCCTT
ET0054783      <-- TGAGTGGGAGCAGTCCTGGCCTTCTTGGGCGCAGCAGGCTTCTTGGCCTT
CT0039811      <-- .......................................cTCTTGGCCTT
CT0039584      <-- ..................................................
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1101   -   1151
RU06193        --> GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0104864      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0107427      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0107917      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0107602      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
ET0054783      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0039811      <-- GGGCTCCTTGGCCTTGGTGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
CT0039584      <-- .................TGGCCTTGCCGGACTTGGCCTCCGGCTTGTCGT
ET0093697      <-- ..................................................
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1151   -   1201
RU06193        --> CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGGGCTCGACGGTCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- CGGCCGGCGGGGGGTTCGACGGTCTTCGGTTtgtcgg.............
CT0104864      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGG...............
CT0107427      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGG...............
CT0107917      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGG...............
CT0107602      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGG...............
ET0054783      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGGGCTCGACGGTCTCGG
CT0039811      <-- CGGCCG-CGGGGGGT-CGACGGTCT-CGGTTGCGGGCTCGACGGTCTCGG
CT0039584      <-- CGGCCGGCGGGGGGT-CGACGGTCT-CGGTTGCGGGCTCGACGGTCTCGG
ET0093697      <-- .......................CT-CGGTTGCGGGCTCGACGGTCTCGG
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1201   -   1251
RU06193        --> TGGTGGCGACGATCTGTTCGTCCTCAGCCATTGGGATCCCCAAATTAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- TGGTGGCGACGATCTGTTCGTCCTCAGCCATTGGGATCCCCAAATTAG..
CT0039811      <-- TGGTGGCGACGATCTGTTCGTCCTCGGCCATTGGGATCCCCGAATTAGGG
CT0039584      <-- TAGTGGCGACGATCTGTTCGTCCTCAGCCATTGGGATCCCCAAATTAGGG
ET0093697      <-- TGGTGGCGACGATCTGTTCGTCCTCGGCCATTGGGATCCCCGAATTAGGG
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1251   -   1301
RU06193        --> TTAGGGTTTTGACGAAAGGAGAAAGGGGGAGACTGGAATTTTGGAAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- ..................................................
CT0018928      <-- ..................................................
ET0008776      <-- ..................................................
ET0016713      <-- ..................................................
CT0122730      <-- ..................................................
ET0034761      <-- ..................................................
CT0057351      <-- ..................................................
CT0071522      <-- ..................................................
ET0006879      <-- ..................................................
CT0063721      <-- ..................................................
ET0084346      <-- ..................................................
CT0119799      <-- ..................................................
CT0119889      <-- ..................................................
CT0121295      <-- ..................................................
CT0122598      <-- ..................................................
ET0146700      <-- ..................................................
ET0087287      <-- ..................................................
ET0096175      <-- ..................................................
ET0097805      <-- ..................................................
ET0103417      <-- ..................................................
ET0121815      <-- ..................................................
CT0068084      <-- ..................................................
ET0072684      <-- ..................................................
CT0109253      <-- ..................................................
ET0064292      <-- ..................................................
CT0041504      <-- ..................................................
CT0087314      <-- ..................................................
CT0087768      <-- ..................................................
CT0090443      <-- ..................................................
CT0091359      <-- ..................................................
CT0092711      <-- ..................................................
CT0093183      <-- ..................................................
CT0093236      <-- ..................................................
CT0094923      <-- ..................................................
CT0095026      <-- ..................................................
CT0083378      <-- ..................................................
CT0095682      <-- ..................................................
CT0096263      <-- ..................................................
ET0140373      <-- ..................................................
CT0065048      <-- ..................................................
ET0002717      <-- ..................................................
CT0104157      <-- ..................................................
CT0104864      <-- ..................................................
CT0107427      <-- ..................................................
CT0107917      <-- ..................................................
CT0107602      <-- ..................................................
ET0054783      <-- ..................................................
CT0039811      <-- TTAGGGTTTTGACGAAAGGAGAAAGGGGGAGACTGGAATTTTGGAAAAGC
CT0039584      <-- TTAGGGTTTTGACGAAAGGAGAAAGGGGGGGACTGGAATTTTGGAAAAGC
ET0093697      <-- TTAGGGTTTTGACGAAAGGAGAAAGGGGGAGACTGGAATTTTGGAAAAGC
CT0030071      --> ..................................................
CT0113461      --> ..................................................
CT0079745      --> ..................................................
CT0111791      --> ..................................................
CT0111925      --> ..................................................
CT0112461      --> ..................................................
CT0113480      --> ..................................................
CT0115760      --> ..................................................
CT0116471      --> ..................................................
ET0030006      --> ..................................................
ET0035547      --> ..................................................
CT0114171      --> ..................................................
CT0114422      --> ..................................................
CT0114492      --> ..................................................
CT0114934      --> ..................................................
ET0038249      --> ..................................................
CT0114028      --> ..................................................
ET0047611      --> ..................................................
ET0100374      --> ..................................................
CT0020238      --> ..................................................
ET0067578      --> ..................................................
CT0009164      --> ..................................................
CT0100239      --> ..................................................
ET0029707      --> ..................................................
ET0104821      --> ..................................................
ET0082727      --> ..................................................
CT0118319      --> ..................................................

               1301   -   1351
RU06193        --> AAAAAGGGAGGAGAGATCTGGATCTACACAGCAAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0108919      <-- .......................................
CT0018928      <-- .......................................
ET0008776      <-- .......................................
ET0016713      <-- .......................................
CT0122730      <-- .......................................
ET0034761      <-- .......................................
CT0057351      <-- .......................................
CT0071522      <-- .......................................
ET0006879      <-- .......................................
CT0063721      <-- .......................................
ET0084346      <-- .......................................
CT0119799      <-- .......................................
CT0119889      <-- .......................................
CT0121295      <-- .......................................
CT0122598      <-- .......................................
ET0146700      <-- .......................................
ET0087287      <-- .......................................
ET0096175      <-- .......................................
ET0097805      <-- .......................................
ET0103417      <-- .......................................
ET0121815      <-- .......................................
CT0068084      <-- .......................................
ET0072684      <-- .......................................
CT0109253      <-- .......................................
ET0064292      <-- .......................................
CT0041504      <-- .......................................
CT0087314      <-- .......................................
CT0087768      <-- .......................................
CT0090443      <-- .......................................
CT0091359      <-- .......................................
CT0092711      <-- .......................................
CT0093183      <-- .......................................
CT0093236      <-- .......................................
CT0094923      <-- .......................................
CT0095026      <-- .......................................
CT0083378      <-- .......................................
CT0095682      <-- .......................................
CT0096263      <-- .......................................
ET0140373      <-- .......................................
CT0065048      <-- .......................................
ET0002717      <-- .......................................
CT0104157      <-- .......................................
CT0104864      <-- .......................................
CT0107427      <-- .......................................
CT0107917      <-- .......................................
CT0107602      <-- .......................................
ET0054783      <-- .......................................
CT0039811      <-- AAAAAGGGAGGAGAGATCTGGATCTACACAGCAAATGTG
CT0039584      <-- TAAAAGGagga............................
ET0093697      <-- AAAA-GGGAGGAGAGATCTGGATCTACACAGCAAAGGTG
CT0030071      --> .......................................
CT0113461      --> .......................................
CT0079745      --> .......................................
CT0111791      --> .......................................
CT0111925      --> .......................................
CT0112461      --> .......................................
CT0113480      --> .......................................
CT0115760      --> .......................................
CT0116471      --> .......................................
ET0030006      --> .......................................
ET0035547      --> .......................................
CT0114171      --> .......................................
CT0114422      --> .......................................
CT0114492      --> .......................................
CT0114934      --> .......................................
ET0038249      --> .......................................
CT0114028      --> .......................................
ET0047611      --> .......................................
ET0100374      --> .......................................
CT0020238      --> .......................................
ET0067578      --> .......................................
CT0009164      --> .......................................
CT0100239      --> .......................................
ET0029707      --> .......................................
ET0104821      --> .......................................
ET0082727      --> .......................................
CT0118319      --> .......................................