SNPs of unigene RU06249
               1      -     51
RU06249        --> AAACGGCGTCTTGGTAAACGCCGCTTCATCTTCTTCTTCTCCTCCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> AAACGGCGTCTTGGTAAACGCCGCTTCATCTTCTTCTTCTCCTCCTCCTC
CT0061476      --> AAACGGCGTCTTGGTAAACGCCGCTTCATCTTCTTCTTCTCCTCCTCCTC
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               51     -    101
RU06249        --> CTCCTCCGTTTCAAAACCCTAA-CCCTAA-TCCCCCAAAAA-T-GAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ................CCCTAAACCCTAA-TCCCCCAAAAACTAGAGAGA
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> CTCCTCCGTTTCAAAACCCTAA-CCCTAA-TCCCCCAAAAA-T-GAGAGA
CT0061476      --> CTCCTCCGTTTCAAAACCCTAA-CCCTAACTCCCCCAAAAA-T-GAGAGA
ET0044627      --> .................................CCCGAAAA-T-GAGAGT
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               101    -    151
RU06249        --> GTGCATTTCGATCCACATCGGCCAGGCCGGAATCCAGGTCGGGAACGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- GTGCATTTCGATCCACATCGGCCAGGCCGGAATCCAGGTCGGGAACGCCT
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> GTGCATTTCGATCCACATCGGCCAGGCCGGAATCCAGGTCGGGAACGCCT
CT0061476      --> GTGCATTTCGATCCACATCGGCCAGGCCGGAATCCAGGTCGGGAACGCCT
ET0044627      --> GTGCATTTCGATCCACATCGGCCAGGCCGGAATCCAGGTCGGAAACGCCT
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               151    -    201
RU06249        --> GCTGGGAGCTTTACTGTCTCGAGCATGGGATCCAGCCGGACGGCCAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- GCTGGGAGCTTTACTGTCTCGAGCATGGGATCCAGCCGGACGGCCAGATG
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> GCTGGGAGCTTTACTGTCTCGAGCATGGGATCCAGCCGGACGGCCAGATG
CT0061476      --> GCTGGGAGCTTTACTGTCTCGAGCATGGGATCCAGCCGGACGGCCAGATG
ET0044627      --> GCTGGGAGCTTTACTGTCTCGAGCATGGGATCCAGCCGGACGGCCAGATG
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               201    -    251
RU06249        --> CCGAGCGACAAGACCGTCGGCCGCGGTGACGACGCTTTCAACACCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- CCGAGCGACAAGACCGTCGGCCGCGGTGACGACGCTTTCAACACCTTCTT
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> CCGAGCGACAAGACCGTCGGCCGCGGTGACGACGCTTT............
CT0061476      --> CCGAGCGACAAGACCGTCGGCCGCGGTGACGACGCTTT............
ET0044627      --> CCGAGCGACAAGACCGTCGGCCGCGGCGACGACGCCTTCAACACCTTCTT
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               251    -    301
RU06249        --> CTCCGAGACCGGCGCCGGCAAGCACGTCCCGCGCGCCATCTTCGTCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- CTCCGAGACCGGCGCCGGCAAGCACGTCCCGCGCGCCATCTTCGTCGACC
CT0125176      <-- ......GACCGGCGCCGGCAAGCACGTCCCGCGCGCCATCTTCGTCGACC
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> CTCCGAGACCGGCGCCGGCAAGCACGTCCCGCGCGCCATCTTCGTCGACC
ET0025513      --> ....................................CATCTTCGTCGACC
ET0026762      --> ....................................CATCTTCGTCGACC
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               301    -    351
RU06249        --> TTGAGCCC-ACCGTCATCGACGAGGTCCGCACCGGAACCTACCGCC-AGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- TTGAGCCC-ACCGTCATCGACGA...........................
CT0125176      <-- TTGAGCCC-ACCGTCATCGACGAGGTCCGCACCGGAACCTACCGCCCAGC
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> TCGAGCCCCACCGTCATCGACGAGGTCCGCA...................
ET0025513      --> TTGAGCCC-ACCGTCATCGACGAGGTCCGCACCGGAACCTACCGCC-AGC
ET0026762      --> TTGAGCCC-ACCGTCATCGACGAGGTCCGCACCGGAACCTACCGCC-AGC
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               351    -    401
RU06249        --> TCTTCCACCCCGAGCAGCTCATCTCCGGCAAGGAGGATGCCGCCAACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- TCTTCCACCCCGAGCAGCTCATCTCCGGCAAGGAGGATGCCGCCAACAAC
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> TCTTCCACCCCGAGCAGCTCATCTCCGGCAAGGAGGATGCCGCCAACAAC
ET0026762      --> TCTTCCACCCCGAGCAGCTCATCTCCGGCAAGGAGGATGCCGCCAACAAC
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               401    -    451
RU06249        --> TTCGCTCGCGGCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- TTCGCTCGCGGCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> TTCGCTCGCGGCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGAT....
ET0026762      --> TTCGCTCGCGGCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGAT....
CT0118884      --> ..........GCCATT-ACACCAATACGGGAAAAGAGATCGTCGATCTAT
CT0121100      --> ..........GCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0121675      --> ..........GCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0122312      --> ..........GCCATTTACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0123180      --> ..........GCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0124969      --> ..........GCCATT-ACACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0108563      --> ...................ACCA-T-CGGGAAA-GAGATCGTCGATCTAT
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               451    -    501
RU06249        --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
ET0068334      <-- ..............................ctaGCACCGGGC-TCCAGGG
ET0104227      <-- ..............................ctaGCACCGGGCGTCCAGGG
ET0106621      <-- ..............................ctaGCACCGGGC-TCCAGGG
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0121100      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0121675      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0122312      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0123180      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0124969      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0108563      --> GCCTGGATCGGATCCGGAAGCTCGCTGATAACTGCACCGGGC-TCCAGGG
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               501    -    551
RU06249        --> A-TTCCTGGTCTTCAATGCCGTCGG--GTGGTACCGGGTCGGGTCTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................  Control
CT0125176      <-- A-TTCC............................................  Control
ET0068334      <-- A-TTCCTGGTCTTCAATGCCGTCGG--GTGGTACCGGGTCGGGTCTTGGG  Ethylene
ET0104227      <-- AGTTCCTGGTCTTCAATGCCGTCGG--GTGGTACCGGGTCGGGTCTTGGG  Ethylene
ET0106621      <-- A-TTCCTGGTCTTCAATGCCGTCGG--GTGGTACCGGGTCGGGTCTTGGG  Ethylene
ET0133997      <-- ..................................................  Ethylene
ET0061143      <-- ..................................................  Ethylene
CT0120903      <-- ..................................................  Control
ET0000593      <-- ..................................................  Ethylene
ET0000783      <-- ..................................................  Ethylene
ET0000997      <-- ..................................................  Ethylene
ET0001121      <-- ..................................................  Ethylene
ET0001309      <-- ..................................................  Ethylene
ET0001626      <-- ..................................................  Ethylene
ET0001768      <-- ..................................................  Ethylene
ET0001969      <-- ..................................................  Ethylene
ET0001977      <-- ..................................................  Ethylene
ET0002176      <-- ..................................................  Ethylene
ET0002823      <-- ..................................................  Ethylene
ET0002984      <-- ..................................................  Ethylene
ET0003133      <-- ..................................................  Ethylene
ET0054959      <-- ..................................................  Ethylene
ET0124379      <-- ..................................................  Ethylene
CT0052103      <-- ..................................................  Control
ET0110701      <-- ..................................................  Ethylene
ET0003083      <-- ..................................................  Ethylene
ET0037535      <-- ..................................................  Ethylene
CT0026466      <-- ..................................................  Control
CT0053093      <-- ..................................................  Control
CT0040200      <-- ..................................................  Control
CT0017786      <-- ..................................................  Control
CT0047088      <-- ..................................................  Control
ET0113249      <-- ..................................................  Ethylene
ET0117302      <-- ..................................................  Ethylene
ET0117788      <-- ..................................................  Ethylene
ET0118271      <-- ..................................................  Ethylene
ET0119983      <-- ..................................................  Ethylene
ET0121322      <-- ..................................................  Ethylene
ET0115026      <-- ..................................................  Ethylene
ET0119788      <-- ..................................................  Ethylene
CT0042111      <-- ..................................................  Control
CT0134867      <-- ..................................................  Control
ET0084210      <-- ..................................................  Ethylene
ET0092785      <-- ..................................................  Ethylene
ET0125804      <-- ..................................................  Ethylene
ET0125983      <-- ..................................................  Ethylene
ET0123488      <-- ..................................................  Ethylene
ET0126692      <-- ..................................................  Ethylene
CT0114756      <-- ..................................................  Control
ET0035999      <-- ..................................................  Ethylene
ET0040825      <-- ..................................................  Ethylene
ET0042149      <-- ..................................................  Ethylene
ET0045774      <-- ..................................................  Ethylene
ET0048771      <-- ..................................................  Ethylene
ET0052433      <-- ..................................................  Ethylene
ET0053016      <-- ..................................................  Ethylene
ET0067122      <-- ..................................................  Ethylene
ET0128614      <-- ..................................................  Ethylene
CT0081572      <-- ..................................................  Control
CT0051990      <-- ..................................................  Control
CT0056219      <-- ..................................................  Control
ET0098487      <-- ..................................................  Ethylene
CT0056651      <-- ..................................................  Control
CT0025391      <-- ..................................................  Control
CT0033072      <-- ..................................................  Control
CT0037282      <-- ..................................................  Control
CT0040365      <-- ..................................................  Control
CT0041123      <-- ..................................................  Control
CT0049747      <-- ..................................................  Control
CT0052781      <-- ..................................................  Control
CT0010911      <-- ..................................................  Control
CT0035824      --> ..................................................  Control
CT0061476      --> ..................................................  Control
ET0044627      --> ..................................................  Ethylene
ET0025513      --> ..................................................  Ethylene
ET0026762      --> ..................................................  Ethylene
CT0118884      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0121100      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0121675      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0122312      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0123180      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0124969      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0108563      --> A-TTCCTGGTCTTCAATGCCGTCGGTGGTGGTACCGGGTCGGGTCTTGGG  Control
CT0032748      --> ..............................................TGGG  Control
CT0084266      --> ..................................................  Control
CT0031553      --> ..................................................  Control
ET0063699      --> ..................................................  Ethylene
CT0074029      --> ..................................................  Control
ET0082482      --> ..................................................  Ethylene
CT0086347      --> ..................................................  Control
CT0097306      --> ..................................................  Control
ET0068919      --> ..................................................  Ethylene
CT0080295      --> ..................................................  Control
ET0042319      --> ..................................................  Ethylene
ET0029622      --> ..................................................  Ethylene
ET0039646      --> ..................................................  Ethylene
ET0008160      --> ..................................................  Ethylene
ET0047488      --> ..................................................  Ethylene
CT0078884      --> ..................................................  Control
ET0056402      --> ..................................................  Ethylene
ET0066179      --> ..................................................  Ethylene
ET0103380      --> ..................................................  Ethylene
CT0051435      --> ..................................................  Control
CT0069551      --> ..................................................  Control
ET0040614      --> ..................................................  Ethylene
ET0068365      --> ..................................................  Ethylene
ET0071365      --> ..................................................  Ethylene
ET0071477      --> ..................................................  Ethylene
ET0090730      --> ..................................................  Ethylene
ET0098268      --> ..................................................  Ethylene
ET0103115      --> ..................................................  Ethylene
CT0052576      --> ..................................................  Control
CT0080994      --> ..................................................  Control
ET0091066      --> ..................................................  Ethylene
ET0127168      --> ..................................................  Ethylene
CT0082552      --> ..................................................  Control
CT0048451      --> ..................................................  Control
CT0008088      --> ..................................................  Control
ET0139463      --> ..................................................  Ethylene
ET0028536      --> ..................................................  Ethylene
ET0027601      --> ..................................................  Ethylene
CT0070542      --> ..................................................  Control
ET0064336      --> ..................................................  Ethylene
CT0059561      --> ..................................................  Control
CT0097690      --> ..................................................  Control
CT0030608      --> ..................................................  Control
CT0111734      --> ..................................................  Control
CT0114505      --> ..................................................  Control
CT0056901      --> ..................................................  Control
CT0057057      --> ..................................................  Control
CT0087009      --> ..................................................  Control
CT0090759      --> ..................................................  Control
CT0035053      --> ..................................................  Control
CT0105315      --> ..................................................  Control
ET0038456      --> ..................................................  Ethylene
CT0080308      --> ..................................................  Control
ET0117609      --> ..................................................  Ethylene
CT0129574      --> ..................................................  Control
CT0101404      --> ..................................................  Control
CT0100070      --> ..................................................  Control
CT0109577      --> ..................................................  Control
CT0111316      --> ..................................................  Control
CT0111618      --> ..................................................  Control
CT0111998      --> ..................................................  Control
CT0112427      --> ..................................................  Control
CT0113716      --> ..................................................  Control
CT0116305      --> ..................................................  Control
CT0117308      --> ..................................................  Control
CT0023104      --> ..................................................  Control
CT0058400      --> ..................................................  Control

               551    -    601
RU06249        --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
ET0104227      <-- TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
ET0106621      <-- TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
ET0133997      <-- ...CTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAGTACCAAGCT
ET0061143      <-- .............................................AAGCT
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0121100      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0121675      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0122312      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0123180      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0124969      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0108563      --> TCGCTT............................................
CT0032748      --> TCGCTTCTGCTGGAGAGGCTTTCTGTGGACTATGGGAAAAAGTCCAAGCT
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               601    -    651
RU06249        --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
ET0104227      <-- CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
ET0106621      <-- CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
ET0133997      <-- CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
ET0061143      <-- CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0121100      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0121675      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0122312      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0123180      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0124969      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0108563      --> ..................................................
CT0032748      --> CGGATTCACTGTTTATCCTTCTCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0084266      --> .....................TCCTCAGGTTTCCACATCTGTTGTGGAGC
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               651    -    701
RU06249        --> CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
ET0104227      <-- CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
ET0106621      <-- CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
ET0133997      <-- CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGA.............
ET0061143      <-- CATATAACAGTGTGCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> CATATAACAGT.......................................
CT0121100      --> CATATAACAGTcg.....................................
CT0121675      --> CATATAACAGT.......................................
CT0122312      --> CATATAACAGT.......................................
CT0123180      --> CATATAACgagt......................................
CT0124969      --> CATATAACAGTcg.....................................
CT0108563      --> ..................................................
CT0032748      --> CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
CT0084266      --> CATATAACAGTGTCCTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
CT0031553      --> ..............CTCTCCACTCATTCGCTGCTTGAGCACACCGATGTG
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               701    -    751
RU06249        --> TCTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCGCCGATCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- TCTGTTTTGCTCGATAATGAGGCCAT........................
ET0104227      <-- TCTGTTTTGCTCGATAATGAGGCCAT........................
ET0106621      <-- TCTGTTTTGCTCGATAATGAGGCCAT........................
ET0133997      <-- ..................................................
ET0061143      <-- TCTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCGCCGATCCCT
CT0120903      <-- ...................................CTGCCGCCGATCCCT
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> TCTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCCCCG......
CT0084266      --> TCTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCGCCGATCCCT
CT0031553      --> TCTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCGCCGATCCCT
ET0063699      --> .CTGTTTTGCTCGATAATGAGGCCATTTACGACATCTGCCGCCGATCCCT
CT0074029      --> ...............tATGAGGCCATTTACGACATCTGCCGCCGATCCCT
ET0082482      --> ...................................CTGCCGCCGATCCCT
CT0086347      --> ......................................CCGCCGATCCCT
CT0097306      --> ....................................ccgaccgaATCCCT
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               751    -    801
RU06249        --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
CT0120903      <-- GGACATTGAGCGTCCCACCTTACACCAATCTCAATCGCCTCGTCTCTCAG
ET0000593      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0000783      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0000997      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001121      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001309      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001626      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001768      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001969      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0001977      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0002176      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0002823      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0002984      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0003133      <-- ...CATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0054959      <-- ..............................TCAATCGCCTCGTCTCTCAG
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
CT0031553      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0063699      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
CT0074029      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0082482      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
CT0086347      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
CT0097306      --> GGACATTGAGCGTCCCACCT-ACACCAATCTCAATCGCCTCGTCTCTCAG
ET0068919      --> .............................CTCAATCGCCTCGTCTCTCAG
CT0080295      --> ..................................TCGCCTCGTCTCTCAG
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               801    -    851
RU06249        --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- GTGATTTCATCATT....................................
CT0120903      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0000593      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0000783      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0000997      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001121      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001309      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001626      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001768      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001969      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0001977      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0002176      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0002823      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0002984      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0003133      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0054959      <-- GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGGGCTCTG-AA
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> GTGATT............................................
CT0031553      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0063699      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
CT0074029      --> GTGATTTCATCATTGACAGCCTCCCCTGAGGTTTGATGGGG-CTCTG-AA
ET0082482      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
CT0086347      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
CT0097306      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0068919      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
CT0080295      --> GTGATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0042319      --> ...ATTTCATCATTGACAGCCTCCC-TGAGGTTTGATGGGG-CTCTG-AA
ET0029622      --> .......................................GG-CTCTG-AA
ET0039646      --> .......................................GG-CTCTGGAA
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               851    -    901
RU06249        --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0000593      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0000783      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0000997      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001121      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001309      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001626      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001768      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001969      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0001977      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0002176      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0002823      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0002984      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0003133      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0054959      <-- TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCC..............
ET0124379      <-- .................TCCAGACCAACTTGGTTCCATACCCAAGGATCC
CT0052103      <-- ....................................ATACCCAAGGATCC
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCC..............
ET0063699      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCCAGGATCC
CT0074029      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCAT............
ET0082482      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
CT0086347      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
CT0097306      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0068919      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
CT0080295      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0042319      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0029622      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0039646      --> TGTGGATGTGACTGAGTTCCAGACCAACTTGGTTCCATACCCAAGGATCC
ET0008160      --> ........................CAACTTGGTTCCATACCCAAGGATCC
ET0047488      --> .............................................GATCC
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               901    -    951
RU06249        --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0000593      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0000783      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0000997      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001121      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001309      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001626      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001768      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001969      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0001977      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0002176      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0002823      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0002984      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0003133      <-- ATTTCATGCTCTCCTCCTATGCTC..........................
ET0054959      <-- ..................................................
ET0124379      <-- ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
CT0052103      <-- ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ATTTCATGCTCTCCTCCTATGCT...........................
CT0074029      --> ..................................................
ET0082482      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
CT0086347      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
CT0097306      --> ATTTCATGCTCTCCTCCTATGCTCCTAGTGATCTCTGCAGgaagaaa...
ET0068919      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
CT0080295      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0042319      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0029622      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0039646      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0008160      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0047488      --> ATTTCATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
CT0078884      --> .....ATGCTCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0056402      --> .........TCTCCTCCTATGCTCCT-GTGATCTCTGCAGAGAAAGCATA
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               951    -   1001
RU06249        --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- CCACGAGC..........................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
CT0052103      <-- CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0110701      <-- ..........CTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0003083      <-- ....................................TGCTTTTGAGCCAG
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTT........
CT0080295      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTT.......
ET0042319      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0029622      --> CCACGAGCAGCTCTCAGTGGCTGAGAT.......................
ET0039646      --> CCACGAGCAGCTCTCAGTGGCTGAGAT.......................
ET0008160      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0047488      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
CT0078884      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0056402      --> CCACGAGCAGCTCTCAGTGGCTGAGATCACCAACAGTGCTTTTGAGCCAG
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1001   -   1051
RU06249        --> CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
CT0052103      <-- CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0110701      <-- CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0003083      <-- CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> CTTCCATGATGGCCAAG.................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> CTTCCATGATGGCCAAGAGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0047488      --> CTTCCATGATGGCCAAGTGTGATCCTCGCCATAGGAAAGTACA.......
CT0078884      --> CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0056402      --> CTTCCATGATGGCCAAGTGTGATCCTCGCCAT-GGAAAGTACATGGCCTG
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1051   -   1101
RU06249        --> CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGGATGTGAATGCGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- CTGTTTGATGTACCGAGGAGATGTGGTG......................
CT0052103      <-- CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGGATGTGA.........
ET0110701      <-- CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGGATGTGAATGCGGCTG
ET0003083      <-- CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGGATGTGAATGCGGCTG
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGG...............
ET0047488      --> ..................................................
CT0078884      --> CTGTTTGATGTACCGAGG................................
ET0056402      --> CTGTTTGATGTACCGAGGAGATGTGGTGCCTAAGGATG............
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> .................................................g
CT0069551      --> .................................................g
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1101   -   1151
RU06249        --> TGGCCACCATCAA-GACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- TGGCCAC...........................................
ET0003083      <-- TGGCCACCATCAA-GACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
ET0037535      <-- ...............ccaAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
CT0026466      <-- ...................................TGTGGACTGGTGCCC
CT0053093      <-- ...........................................GGTGGCC
CT0040200      <-- ............................................GTGGCC
CT0017786      <-- .............................................tggCC
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ......CCATCAAAGACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
ET0103380      --> ......CCATCAA-GACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
CT0051435      --> agtgcgtctctAA-GACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
CT0069551      --> agtgcgtctctAA-GACCAAGCGTACCATTCAGTTTGTGGACTGGTGCCC
ET0040614      --> .................CAAGCGTACCATTCTGTTTGTGGACTGGTGCCC
ET0068365      --> ........................ACCATTCAGTTTGTGGACTGGTGCCC
ET0071365      --> ........................ACCATTCAGTTTGTGGACTGGTGCCC
ET0071477      --> ........................ACCATTCAGTTTGTGGACTGGTGCCC
ET0090730      --> ........................ACCATTCAGTTTGTGGACTGGTGCCC
ET0098268      --> ........................ACCATTCAGTTTGTGGACTGGTGCCC
ET0103115      --> .......................aACCATTCAGTTTGTGGACTGGTGCCC
CT0052576      --> ................................GTTTGTGGACTGGTGCCC
CT0080994      --> .............................................TGCCC
ET0091066      --> ................acctatttctagttttgttggtacttggtTGCCC
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1151   -   1201
RU06249        --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0037535      <-- TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0026466      <-- TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0053093      <-- TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0040200      <-- TACT-GGGGTTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0017786      <-- TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0047088      <-- .....GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0113249      <-- ..................................CACCCACTGTTGTTCC
ET0117302      <-- ..................................CACCCACTGTTGTTCC
ET0117788      <-- ..................................CACCCACTGTTGTTCC
ET0118271      <-- ..................................CACCCACTGTTGTTCC
ET0119983      <-- ..................................CACCCACTGTTGTTCC
ET0121322      <-- ..................................CACCCACTGTTGTTCC
ET0115026      <-- ............................................TGTTCC
ET0119788      <-- ............................................TGTTCC
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0103380      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0051435      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0069551      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0040614      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0068365      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0071365      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0071477      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0090730      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0098268      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0103115      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0052576      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0080994      --> TACT-GGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0091066      --> TACTTGGG-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
ET0127168      --> .......G-TTCAAGTGTGGTATCAACTACCAGCCACCCACTGTTGTTCC
CT0082552      --> ...................................ACCCACTGTTGTTCC
CT0048451      --> ...............................................TCC
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1201   -   1251
RU06249        --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- TGGCGGTGACCTTGCTAAGG..............................
ET0037535      <-- TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0026466      <-- TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0053093      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0040200      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0017786      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0047088      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0113249      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0117302      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0117788      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0118271      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0119983      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0121322      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0115026      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0119788      <-- AGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0103380      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0051435      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0069551      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0040614      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0068365      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0071365      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0071477      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0090730      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0098268      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0103115      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0052576      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0080994      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0091066      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0127168      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0082552      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0048451      --> TGGCGGTGACCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
CT0008088      --> .........CCTTGCTAAGGTGCAGAGGGCTGTGTGCATGATCTCCAACT
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1251   -   1301
RU06249        --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0026466      <-- CCACCAGTGTGGCT-GAGGTGTTCT.........................
CT0053093      <-- CCACCAG...........................................
CT0040200      <-- CCACCAG...........................................
CT0017786      <-- CCACCAG...........................................
CT0047088      <-- CCACCAG...........................................
ET0113249      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0117302      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0117788      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0118271      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0119983      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0121322      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0115026      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0119788      <-- CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0042111      <-- ...........................CGCATTGATCACAAGTTT-GATC
CT0134867      <-- ...................................TCACAAGTTT-GATC
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0103380      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0051435      --> CCA...............................................
CT0069551      --> CCA...............................................
ET0040614      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0068365      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0071365      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0071477      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0090730      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0098268      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0103115      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0052576      --> CCACCAGTGTGGCTAGAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0080994      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAG........
ET0091066      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0127168      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0082552      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0048451      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
CT0008088      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0139463      --> CCACCAGTGTGGCT-GAGGTGTTCTCCCGCATTGATCACAAGTTT-GATC
ET0028536      --> ...................................TCACAAGTTT-GATC
ET0027601      --> ....................................CACAAGTTTTGATC
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1301   -   1351
RU06249        --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA..
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0117302      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0117788      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0118271      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0119983      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0121322      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0115026      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0119788      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
CT0042111      <-- TGATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
CT0134867      <-- TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> TGATGTACGCCAAGCGTGCTTTCG-GCATTGGTATGgtggg.........
ET0103380      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGG..........
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> TGATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCAg.
ET0068365      --> TGATGTACGCCAAGCGTGCTTTCGTGCATT....................
ET0071365      --> TGATGTACGCCAAGCGTGCTTTCGTGCATT....................
ET0071477      --> TGATGTACGCCAAGCGTGCTTTCGTGCATT....................
ET0090730      --> TGATGTACGCCAAGCGTGCTTTCGTGCATT....................
ET0098268      --> TGATGTACGCCAAGCGTGCTTTCGTGCATT....................
ET0103115      --> TGATGTACGCCAAGCGTGCTTTCGTGCAT.....................
CT0052576      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCAGT
CT0080994      --> ..................................................
ET0091066      --> TGATGTACGCCAAGCGTGCTTTCGTGCAT.....................
ET0127168      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
CT0082552      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
CT0048451      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
CT0008088      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
ET0139463      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
ET0028536      --> TGATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0027601      --> TGATGTACGCCAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGCA-T
CT0070542      --> .........CCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCA-T
ET0064336      --> ...................................GTGGGTGAGGGCA-T
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1351   -   1401
RU06249        --> GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0117302      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0117788      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0118271      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0119983      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0121322      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0115026      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
ET0119788      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATC...............
CT0042111      <-- GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
CT0134867      <-- GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGA
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> GGAGGAAGGAGAGTT...................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> GGAGGAAGGAGAGTTCTCTGAGGCT.........................
CT0082552      --> GGAGGAAGGA........................................
CT0048451      --> GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
CT0008088      --> GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
ET0139463      --> GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
ET0028536      --> GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGA
ET0027601      --> GGAGGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
CT0070542      --> GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGA
ET0064336      --> GGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGA
CT0059561      --> ...............CTCTGAGGCTCGTGAGGATCTCGCTGCTCTGGAGA
CT0097690      --> .........................................CTCTGGAGA
CT0030608      --> .................................................A
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1401   -   1451
RU06249        --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGTG
CT0134867      <-- AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGCG
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- ..................................................
ET0125983      <-- ..................................................
ET0123488      <-- ..................................................
ET0126692      <-- ..................................................
CT0114756      <-- ..................................................
ET0035999      <-- ..................................................
ET0040825      <-- ..................................................
ET0042149      <-- ..................................................
ET0045774      <-- ..................................................
ET0048771      <-- ..................................................
ET0052433      <-- ..................................................
ET0053016      <-- ..................................................
ET0067122      <-- ..................................................
ET0128614      <-- ..................................................
CT0081572      <-- ..................................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> AGGATTA...........................................
CT0008088      --> AGGATTATGAGGAG....................................
ET0139463      --> AGGATTATGAGGAGGTTTGGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
ET0028536      --> AGGATTATGga.......................................
ET0027601      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0070542      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGCG
ET0064336      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGCG
CT0059561      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0097690      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0030608      --> AGGATTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0111734      --> ....TTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0114505      --> ....TTATGAGGAGGTT-GGTGCCGAGTCTGCG-GAGGGAGATGATGGTG
CT0056901      --> ........GAGGAGGTT-GGTGCCGAGTCTGCT-GAGGGAGATGATGGCG
CT0057057      --> ..........................tTCTGCT-GAGGGAGATGATGGCG
CT0087009      --> .........................atTCTGCTTGATGGAGATGATGGTG
CT0090759      --> ......................ttattTCTGCTTGATGGAGATGATGGTG
CT0035053      --> .............................................TGGCG
CT0105315      --> ..............................................ggcg
ET0038456      --> ..................................................
CT0080308      --> ..................................................
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1451   -   1501
RU06249        --> AT-GAAGGAGACGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- AT-GAAGG..........................................
CT0134867      <-- AT-GAAGGAGATGAG...................................
ET0084210      <-- ...............TACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
ET0092785      <-- ...............TACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
ET0125804      <-- .......................CTGTTGCAATATGTTGG-TCTA-TGGT
ET0125983      <-- .......................CTGTTGCAATATGTTGG-TCTA-TGGT
ET0123488      <-- ........................TGTTGCAATATGTTGGGTCTA-TGGT
ET0126692      <-- ........................TGTTGCAATATGTTGG-TCTA-TGGT
CT0114756      <-- .............................CAATATGTTGG-TCTA-TGGT
ET0035999      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0040825      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0042149      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0045774      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0048771      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0052433      <-- .............................CAATATGTTGG-TCTA-TGGT
ET0053016      <-- ............................tCAATATGTTGG-TCTA-TGGT
ET0067122      <-- .............................CAATATGTTGG-TCTA-TGGT
ET0128614      <-- .............................CAATATGTTGG-TCTA-TGGT
CT0081572      <-- ...........................................TA-TGGT
CT0051990      <-- ......................................ttggaactTGGT
CT0056219      <-- ..................................................
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> AT-GAAGGAGAGGAGTACTGATT...........................
ET0028536      --> ..................................................
ET0027601      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTAGTGGT
CT0070542      --> ATAGAAGGAGATGAGTACTGATTCTGTTGCAATATGTTGG-TCT---GGT
ET0064336      --> AT-GAAGGAGATGAGTACTGATTCTGTTGCAATATGTTGG-TCT---GGT
CT0059561      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0097690      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0030608      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0111734      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0114505      --> AT-GAAGGAGAGGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0056901      --> AT-GAAGGAGACGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0057057      --> AT-GAAGGAGACGAGTACTGATTCTGTTGCAATATGTTG...........
CT0087009      --> AT-GAAGGAGATGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0090759      --> AT-GAAGGAGATGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0035053      --> AT-GAAGGAGACGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
CT0105315      --> ttaGAAGGAGATGAGTACTGATTCTGTTGCAATATGTTGG-TCTA-TGGT
ET0038456      --> ................................tcTGTTGG-TCTA-TGGT
CT0080308      --> ...........................................TA-TGGT
ET0117609      --> ..................................................
CT0129574      --> ..................................................
CT0101404      --> ..................................................
CT0100070      --> ..................................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1501   -   1551
RU06249        --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0092785      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0125804      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0125983      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0123488      <-- G-ATAAAAACTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0126692      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACTTTTTATGT
CT0114756      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0035999      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0040825      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0042149      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0045774      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0048771      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0052433      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0053016      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
ET0067122      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0128614      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0081572      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0051990      <-- G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0056219      <-- ......AA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0098487      <-- ..................................................
CT0056651      <-- ..................................................
CT0025391      <-- ..................................................
CT0033072      <-- ..................................................
CT0037282      <-- ..................................................
CT0040365      <-- ..................................................
CT0041123      <-- ..................................................
CT0049747      <-- ..................................................
CT0052781      <-- ..................................................
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> G-Aataaa..........................................
CT0070542      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTta..........
ET0064336      --> GAATAAAA-CTTCATGCTTTATGTGTCCTTTTCTATTTTACT-GTTATGT
CT0059561      --> G-AT..............................................
CT0097690      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0030608      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTAT..
CT0111734      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0114505      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0056901      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0057057      --> ..................................................
CT0087009      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0090759      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
CT0035053      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0105315      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0038456      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0080308      --> G-ATAAAA-CTTCATGCTTTATGTG-CCTTT-CTATTTCACT-GTTATGT
ET0117609      --> ..............TGCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0129574      --> ...............GCTTTATGTG-CCTTT-CTATTTTACT-TTTATGT
CT0101404      --> ..................................ATTTCACT-GTTATGT
CT0100070      --> ................................................GT
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> ..................................................

               1551   -   1601
RU06249        --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0092785      <-- TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0125804      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0125983      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0123488      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTGGGGTATGTGGTGT
ET0126692      <-- TTCAAAATGGATGCTTAATACTGGATAAATTGTTGTG-GGTATGTGGTGT
CT0114756      <-- TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0035999      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0040825      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0042149      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0045774      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0048771      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0052433      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0053016      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
ET0067122      <-- TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0128614      <-- TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0081572      <-- TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
CT0051990      <-- TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0056219      <-- TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0098487      <-- .cgtTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0056651      <-- .........................TAA-TTGTTGTG-TGCGTGTGGTGT
CT0025391      <-- ...............................................TGT
CT0033072      <-- ...............................................TGT
CT0037282      <-- ...............................................TGT
CT0040365      <-- ...............................................TGT
CT0041123      <-- ...............................................TGT
CT0049747      <-- ...............................................TGT
CT0052781      <-- ...............................................TGT
CT0010911      <-- ..................................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> TTCGTAATGGATGCTTAATacggta.........................
CT0059561      --> ..................................................
CT0097690      --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0030608      --> ..................................................
CT0111734      --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0114505      --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0056901      --> TTCAAAATGGATGCTTAAT...............................
CT0057057      --> ..................................................
CT0087009      --> TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0090759      --> TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0035053      --> TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
CT0105315      --> TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0038456      --> TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
CT0080308      --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
ET0117609      --> TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
CT0129574      --> TTCAAAATGGATGCTTAATACTGGATAA-TTGTTGTG-GGTATGTGGTGT
CT0101404      --> TTCGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0100070      --> TTTGTAATGGATGCTTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0109577      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0111316      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0111618      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0111998      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0112427      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0113716      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0116305      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0117308      --> ..............TTAATGCTGGATAA-TTGTTGTG-TGCGTGTGGTGT
CT0023104      --> ....................tcctgtgA-TTGTGGTT-TGCGTGTGGTGT
CT0058400      --> ..................................................

               1601   -   1651
RU06249        --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0092785      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0125804      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0125983      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0123488      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0126692      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
CT0114756      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0035999      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0040825      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0042149      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0045774      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0048771      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0052433      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0053016      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
ET0067122      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0128614      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0081572      <-- ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
CT0051990      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACA..................
CT0056219      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0098487      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0056651      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0025391      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0033072      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0037282      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0040365      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0041123      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0049747      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0052781      <-- ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0010911      <-- ...cacaaatgtttTCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ATGTGCTCTATGCATCTTA...............................
CT0030608      --> ..................................................
CT0111734      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAG................
CT0114505      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAG................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTA........
CT0090759      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCT.........
CT0035053      --> ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
CT0105315      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0038456      --> ATGTGCTCTATGCATCATACCATTGTAGCA-AAGCACTTCTATCTTGGTA
CT0080308      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
ET0117609      --> ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
CT0129574      --> ATGTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA
CT0101404      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0100070      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0109577      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0111316      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0111618      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0111998      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0112427      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0113716      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0116305      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0117308      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0023104      --> ATGTGCTCTATGCATCTTACCATTGTAGCACAAGCACTTCTATCTTAGTA
CT0058400      --> ..GTGCTCTATGCATCATACCATTGTAGCAGAAGCACTTCTATCTTGGTA

               1651   -   1701
RU06249        --> TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- TATGTTAAAA-TTTCTATTGCTTCTGC.......................
ET0092785      <-- TATGTTAAAA-TTTCTATTGCTTCTGC.......................
ET0125804      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCATTAAT
ET0125983      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0123488      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0126692      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
CT0114756      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
ET0035999      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0040825      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0042149      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0045774      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0048771      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0052433      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0053016      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
ET0067122      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
ET0128614      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0081572      <-- TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
CT0051990      <-- ..................................................
CT0056219      <-- TATGTTAAAA-TTTCTATTGCTTCTGC.......................
ET0098487      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0056651      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0025391      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0033072      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0037282      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0040365      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0041123      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0049747      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0052781      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0010911      <-- TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> TATGT-AAAA-GTTCTATTGCTTCTG........................
CT0105315      --> TATGTTAAAA-TTTCTATTGCTT...........................
ET0038456      --> TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
CT0080308      --> TATGTTAAAA-TTTCTATTGCTTCTGac......................
ET0117609      --> TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
CT0129574      --> TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA
CT0101404      --> TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0100070      --> TATGTTAAAA-TTTCTATTGCTTCTGCAAAATATCCAATCTATCAT--AT
CT0109577      --> TATGTTAAAA-TTTCTATTGCTTCTag.......................
CT0111316      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0111618      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0111998      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0112427      --> TATGTTAAAA-TTTCTATTGCTTCTGac......................
CT0113716      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0116305      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0117308      --> TATGTTAAAAATTTCTATTGCTTCTGC.......................
CT0023104      --> TATGTTAAAA-TTTCTATTGCTTCTG........................
CT0058400      --> TATGTAAAAG-TTTCTATTGCTTCTGCAATATATCCAATCTATCAT--AA

               1701   -   1751
RU06249        --> TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ..................................................
CT0125176      <-- ..................................................
ET0068334      <-- ..................................................
ET0104227      <-- ..................................................
ET0106621      <-- ..................................................
ET0133997      <-- ..................................................
ET0061143      <-- ..................................................
CT0120903      <-- ..................................................
ET0000593      <-- ..................................................
ET0000783      <-- ..................................................
ET0000997      <-- ..................................................
ET0001121      <-- ..................................................
ET0001309      <-- ..................................................
ET0001626      <-- ..................................................
ET0001768      <-- ..................................................
ET0001969      <-- ..................................................
ET0001977      <-- ..................................................
ET0002176      <-- ..................................................
ET0002823      <-- ..................................................
ET0002984      <-- ..................................................
ET0003133      <-- ..................................................
ET0054959      <-- ..................................................
ET0124379      <-- ..................................................
CT0052103      <-- ..................................................
ET0110701      <-- ..................................................
ET0003083      <-- ..................................................
ET0037535      <-- ..................................................
CT0026466      <-- ..................................................
CT0053093      <-- ..................................................
CT0040200      <-- ..................................................
CT0017786      <-- ..................................................
CT0047088      <-- ..................................................
ET0113249      <-- ..................................................
ET0117302      <-- ..................................................
ET0117788      <-- ..................................................
ET0118271      <-- ..................................................
ET0119983      <-- ..................................................
ET0121322      <-- ..................................................
ET0115026      <-- ..................................................
ET0119788      <-- ..................................................
CT0042111      <-- ..................................................
CT0134867      <-- ..................................................
ET0084210      <-- ..................................................
ET0092785      <-- ..................................................
ET0125804      <-- TATGTT-GTTTAAa....................................
ET0125983      <-- TATG-T-GTTTAAa....................................
ET0123488      <-- TATG-T-GTTTAAa....................................
ET0126692      <-- TATG-T-GTTTAAaa...................................
CT0114756      <-- TATG-T-GTTTA......................................
ET0035999      <-- TATG-T-GTTTAATG...................................
ET0040825      <-- TATG-TCGTTTAATG...................................
ET0042149      <-- TATG-T-GTTTAATag..................................
ET0045774      <-- TATG-T-GTTTAATG...................................
ET0048771      <-- TATG-T-GTTTAATG...................................
ET0052433      <-- TATG-T-GTTTAATG...................................
ET0053016      <-- TATG-T-GTTTAATG...................................
ET0067122      <-- TATG-T-GTTTg......................................
ET0128614      <-- TATG-T-GTTTAAaaaaaaa..............................
CT0081572      <-- TATG-T-GTTTAATG...................................
CT0051990      <-- ..................................................
CT0056219      <-- ..................................................
ET0098487      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0056651      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0025391      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0033072      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0037282      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0040365      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0041123      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0049747      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0052781      <-- TATG-T-GTTTAATGAGTCCGGCGTTCTGTACTACTATATTATAGATGAT
CT0010911      <-- TATG-T-GTTTAATG...................................
CT0035824      --> ..................................................
CT0061476      --> ..................................................
ET0044627      --> ..................................................
ET0025513      --> ..................................................
ET0026762      --> ..................................................
CT0118884      --> ..................................................
CT0121100      --> ..................................................
CT0121675      --> ..................................................
CT0122312      --> ..................................................
CT0123180      --> ..................................................
CT0124969      --> ..................................................
CT0108563      --> ..................................................
CT0032748      --> ..................................................
CT0084266      --> ..................................................
CT0031553      --> ..................................................
ET0063699      --> ..................................................
CT0074029      --> ..................................................
ET0082482      --> ..................................................
CT0086347      --> ..................................................
CT0097306      --> ..................................................
ET0068919      --> ..................................................
CT0080295      --> ..................................................
ET0042319      --> ..................................................
ET0029622      --> ..................................................
ET0039646      --> ..................................................
ET0008160      --> ..................................................
ET0047488      --> ..................................................
CT0078884      --> ..................................................
ET0056402      --> ..................................................
ET0066179      --> ..................................................
ET0103380      --> ..................................................
CT0051435      --> ..................................................
CT0069551      --> ..................................................
ET0040614      --> ..................................................
ET0068365      --> ..................................................
ET0071365      --> ..................................................
ET0071477      --> ..................................................
ET0090730      --> ..................................................
ET0098268      --> ..................................................
ET0103115      --> ..................................................
CT0052576      --> ..................................................
CT0080994      --> ..................................................
ET0091066      --> ..................................................
ET0127168      --> ..................................................
CT0082552      --> ..................................................
CT0048451      --> ..................................................
CT0008088      --> ..................................................
ET0139463      --> ..................................................
ET0028536      --> ..................................................
ET0027601      --> ..................................................
CT0070542      --> ..................................................
ET0064336      --> ..................................................
CT0059561      --> ..................................................
CT0097690      --> ..................................................
CT0030608      --> ..................................................
CT0111734      --> ..................................................
CT0114505      --> ..................................................
CT0056901      --> ..................................................
CT0057057      --> ..................................................
CT0087009      --> ..................................................
CT0090759      --> ..................................................
CT0035053      --> ..................................................
CT0105315      --> ..................................................
ET0038456      --> TATG..............................................
CT0080308      --> ..................................................
ET0117609      --> TATG-T-GTTTA......................................
CT0129574      --> TATG-T-GTTTAATGc..................................
CT0101404      --> TATG-T-GTTTA......................................
CT0100070      --> TATG-T-GTTTAAa....................................
CT0109577      --> ..................................................
CT0111316      --> ..................................................
CT0111618      --> ..................................................
CT0111998      --> ..................................................
CT0112427      --> ..................................................
CT0113716      --> ..................................................
CT0116305      --> ..................................................
CT0117308      --> ..................................................
CT0023104      --> ..................................................
CT0058400      --> TATG-T-GTTT.......................................

               1751   -   1801
RU06249        --> TCATGTTCATAGCAAAAAAAAAtttctt
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0044719      <-- ............................
CT0125176      <-- ............................
ET0068334      <-- ............................
ET0104227      <-- ............................
ET0106621      <-- ............................
ET0133997      <-- ............................
ET0061143      <-- ............................
CT0120903      <-- ............................
ET0000593      <-- ............................
ET0000783      <-- ............................
ET0000997      <-- ............................
ET0001121      <-- ............................
ET0001309      <-- ............................
ET0001626      <-- ............................
ET0001768      <-- ............................
ET0001969      <-- ............................
ET0001977      <-- ............................
ET0002176      <-- ............................
ET0002823      <-- ............................
ET0002984      <-- ............................
ET0003133      <-- ............................
ET0054959      <-- ............................
ET0124379      <-- ............................
CT0052103      <-- ............................
ET0110701      <-- ............................
ET0003083      <-- ............................
ET0037535      <-- ............................
CT0026466      <-- ............................
CT0053093      <-- ............................
CT0040200      <-- ............................
CT0017786      <-- ............................
CT0047088      <-- ............................
ET0113249      <-- ............................
ET0117302      <-- ............................
ET0117788      <-- ............................
ET0118271      <-- ............................
ET0119983      <-- ............................
ET0121322      <-- ............................
ET0115026      <-- ............................
ET0119788      <-- ............................
CT0042111      <-- ............................
CT0134867      <-- ............................
ET0084210      <-- ............................
ET0092785      <-- ............................
ET0125804      <-- ............................
ET0125983      <-- ............................
ET0123488      <-- ............................
ET0126692      <-- ............................
CT0114756      <-- ............................
ET0035999      <-- ............................
ET0040825      <-- ............................
ET0042149      <-- ............................
ET0045774      <-- ............................
ET0048771      <-- ............................
ET0052433      <-- ............................
ET0053016      <-- ............................
ET0067122      <-- ............................
ET0128614      <-- ............................
CT0081572      <-- ............................
CT0051990      <-- ............................
CT0056219      <-- ............................
ET0098487      <-- TCATGTTCATAGCACAAAtgttttctt.
CT0056651      <-- TCATGTTCATAGCACAAAtgtttttcta
CT0025391      <-- TCATGTTCATAGCAAAAAAAAA......
CT0033072      <-- TCATGTTCATAGCAAAAAAAAA......
CT0037282      <-- TCATGTTCATAGCAAAAAAAAA......
CT0040365      <-- TCATGTTCATAGCAAAAAAAAA......
CT0041123      <-- TCATGTTCATAGCAAAAAAAAA......
CT0049747      <-- TCATGTTCATAGCAAAAAAAA.......
CT0052781      <-- TCATGTTCATAGCAAAAAAAAA......
CT0010911      <-- ............................
CT0035824      --> ............................
CT0061476      --> ............................
ET0044627      --> ............................
ET0025513      --> ............................
ET0026762      --> ............................
CT0118884      --> ............................
CT0121100      --> ............................
CT0121675      --> ............................
CT0122312      --> ............................
CT0123180      --> ............................
CT0124969      --> ............................
CT0108563      --> ............................
CT0032748      --> ............................
CT0084266      --> ............................
CT0031553      --> ............................
ET0063699      --> ............................
CT0074029      --> ............................
ET0082482      --> ............................
CT0086347      --> ............................
CT0097306      --> ............................
ET0068919      --> ............................
CT0080295      --> ............................
ET0042319      --> ............................
ET0029622      --> ............................
ET0039646      --> ............................
ET0008160      --> ............................
ET0047488      --> ............................
CT0078884      --> ............................
ET0056402      --> ............................
ET0066179      --> ............................
ET0103380      --> ............................
CT0051435      --> ............................
CT0069551      --> ............................
ET0040614      --> ............................
ET0068365      --> ............................
ET0071365      --> ............................
ET0071477      --> ............................
ET0090730      --> ............................
ET0098268      --> ............................
ET0103115      --> ............................
CT0052576      --> ............................
CT0080994      --> ............................
ET0091066      --> ............................
ET0127168      --> ............................
CT0082552      --> ............................
CT0048451      --> ............................
CT0008088      --> ............................
ET0139463      --> ............................
ET0028536      --> ............................
ET0027601      --> ............................
CT0070542      --> ............................
ET0064336      --> ............................
CT0059561      --> ............................
CT0097690      --> ............................
CT0030608      --> ............................
CT0111734      --> ............................
CT0114505      --> ............................
CT0056901      --> ............................
CT0057057      --> ............................
CT0087009      --> ............................
CT0090759      --> ............................
CT0035053      --> ............................
CT0105315      --> ............................
ET0038456      --> ............................
CT0080308      --> ............................
ET0117609      --> ............................
CT0129574      --> ............................
CT0101404      --> ............................
CT0100070      --> ............................
CT0109577      --> ............................
CT0111316      --> ............................
CT0111618      --> ............................
CT0111998      --> ............................
CT0112427      --> ............................
CT0113716      --> ............................
CT0116305      --> ............................
CT0117308      --> ............................
CT0023104      --> ............................
CT0058400      --> ............................