Rose Transcriptome Database

               126    -    176
RU06295        --> ACCACGTACTCTTGCGTCGGCGTCTGGCAACACGACCGTGTTGAGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ............................AACACGACCGTGTTGAGATCAT
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ACCACTTACTCTTGCGTCGGCGTCTGGCAACACGACCGTGTTGAGATCAT
RH27AC281      --> ACCACTTACTCTTGCGTCGGCGTCTGGCAACACGACCGTGTTGAGATCAT
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               176    -    226
RU06295        --> CGCCAACGACCAGGGAAACCGGACGACCCCGTCGTATGTCGCCTTCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- CGCCAACGACCAGGGAAACCGGACGACCCCGTCGTATGTCGCCTTCACCG
ET0061029      <-- ........................GACCCCGTCGTATGTCGCCTTCACCG
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CGCCAACGACCAGGGAAACCGGACGACCCCGTCGTATGTCGCCTTCACCG
RH27AC281      --> CGCCAACGACCAGGGAAACCGGACGACCCCGTCGTATGTCGCCTTCACCG
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               226    -    276
RU06295        --> ACACCGAGAGGTTGATCGGAGACGCCGCTAAGAACCAGGTCGCCATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ACACCGAGAGGTTGATCGGAGACGCCGCTAAGAACCAGGTCGCCATGAAC
ET0061029      <-- ACACCGAGAGGTTGATCGGAGACGCCGCTAAGAACCAGGTCGCCATGAAC
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ACACCGAGAGGTTGATCGGAGACGCCGCTAAGAACCAGGTCGCCATGAAC
RH27AC281      --> ACACCGAGAGGTTGATCGGAGACGCCGCTAAGAACCAGGTCGCCATGAAC
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               276    -    326
RU06295        --> CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
ET0061029      <-- CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
ET0010237      <-- CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
ET0144992      <-- ..............................TTGATTGGTCGTAGATTCAC
CT0094685      <-- ..............................................ctAC
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
RH27AC281      --> CCAATCAACACTGTTTTTGATGCTAAGCGATTGATTGGTCGTAGATTCAC
CT0030937      --> ............................................ATTCAC
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               326    -    376
RU06295        --> CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
ET0061029      <-- CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
ET0010237      <-- CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
ET0144992      <-- CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
CT0094685      <-- CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
ET0059878      <-- ..................................CCATTCAAGGTCATCG
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
RH27AC281      --> CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
CT0030937      --> CGATGCCTCAGTTCAGGGTGACATGAAGTTGTGGCCATTCAAGGTCATCG
ET0042144      --> ......................ATGAAGTTGTGGCCATTCAAGGTCATCG
CT0055095      --> .......................................CAAGGTCATCG
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               376    -    426
RU06295        --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- CTGGCCCTGCTGACAAGC................................
ET0061029      <-- CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
ET0010237      <-- CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
ET0144992      <-- CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
CT0094685      <-- CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
ET0059878      <-- CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
RH27AC281      --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
CT0030937      --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
ET0042144      --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
CT0055095      --> CTGGCCCTGCTGACAAGCCTATGATTGGAGTCTCATACAAGGGAGAAGAG
ET0111661      --> ..................ctgTGATTGGAGTCTCATACAAGGGAGAAGAG
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               426    -    476
RU06295        --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- AAGactaattt.......................................
ET0010237      <-- AAGCTATTTGCTGCTGAGGAGATC..........................
ET0144992      <-- AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
CT0094685      <-- AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
ET0059878      <-- AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
CT0094709      <-- .......................CTCTTCCATGGTCCTTATCAAGATGCG
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
RH27AC281      --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
CT0030937      --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
ET0042144      --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
CT0055095      --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
ET0111661      --> AAGCTATTTGCTGCTGAGGAGATCTCTTCCATGGTCCTTATCAAGATGCG
ET0022135      --> .........................................CAAGATGCG
ET0033979      --> .........................................CAAGATGCG
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               476    -    526
RU06295        --> TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................  Ethylene
ET0061029      <-- ..................................................  Ethylene
ET0010237      <-- ..................................................  Ethylene
ET0144992      <-- TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Ethylene
CT0094685      <-- TGAGATCGCCGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Control
ET0059878      <-- TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAAT..........  Ethylene
CT0094709      <-- TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Control
ET0057302      <-- ..................................AAGAATGCAGTGGTCA  Ethylene
ET0058734      <-- ..................................AAGAATGCAGTGGTCA  Ethylene
ET0067419      <-- ..................................AAGAATGCAGTGGTCA  Ethylene
ET0091421      <-- ..................................AAGAATGCAGTGGTCA  Ethylene
ET0001958      <-- ..................................................  Ethylene
CT0021261      <-- ..................................................  Control
ET0126124      <-- ..................................................  Ethylene
ET0126729      <-- ..................................................  Ethylene
ET0028015      <-- ..................................................  Ethylene
CT0127823      <-- ..................................................  Control
ET0062471      <-- ..................................................  Ethylene
CT0119372      <-- ..................................................  Control
CT0120499      <-- ..................................................  Control
CT0121533      <-- ..................................................  Control
CT0121909      <-- ..................................................  Control
CT0093451      <-- ..................................................  Control
CT0065376      <-- ..................................................  Control
ET0140157      <-- ..................................................  Ethylene
CT0017592      <-- ..................................................  Control
ET0074622      <-- ..................................................  Ethylene
ET0074920      <-- ..................................................  Ethylene
ET0075116      <-- ..................................................  Ethylene
ET0097616      <-- ..................................................  Ethylene
ET0100871      <-- ..................................................  Ethylene
ET0071426      <-- ..................................................  Ethylene
ET0100872      <-- ..................................................  Ethylene
ET0106379      <-- ..................................................  Ethylene
ET0105588      <-- ..................................................  Ethylene
ET0006014      <-- ..................................................  Ethylene
ET0131563      <-- ..................................................  Ethylene
RH14L31        <-- ..................................................  WaterDS
CT0078033      <-- ..................................................  Control
CT0119991      <-- ..................................................  Control
CT0120536      <-- ..................................................  Control
CT0121076      <-- ..................................................  Control
CT0121115      <-- ..................................................  Control
CT0122129      <-- ..................................................  Control
CT0122486      <-- ..................................................  Control
CT0122670      <-- ..................................................  Control
CT0123914      <-- ..................................................  Control
CT0124175      <-- ..................................................  Control
CT0125471      <-- ..................................................  Control
CT0125951      <-- ..................................................  Control
CT0126209      <-- ..................................................  Control
CT0126587      <-- ..................................................  Control
CT0125714      <-- ..................................................  Control
CT0126349      <-- ..................................................  Control
CT0124332      <-- ..................................................  Control
CT0089605      <-- ..................................................  Control
ET0001153      <-- ..................................................  Ethylene
ET0115152      <-- ..................................................  Ethylene
ET0090043      <-- ..................................................  Ethylene
CT0100659      <-- ..................................................  Control
CT0102523      <-- ..................................................  Control
CT0103647      <-- ..................................................  Control
CT0103817      <-- ..................................................  Control
CT0104669      <-- ..................................................  Control
CT0107737      <-- ..................................................  Control
ET0120346      <-- ..................................................  Ethylene
ET0085744      <-- ..................................................  Ethylene
CT0087196      <-- ..................................................  Control
CT0130798      <-- ..................................................  Control
CT0129187      <-- ..................................................  Control
CT0131243      <-- ..................................................  Control
CT0132295      <-- ..................................................  Control
CT0132437      <-- ..................................................  Control
CT0132842      <-- ..................................................  Control
CT0133044      <-- ..................................................  Control
CT0133144      <-- ..................................................  Control
CT0134078      <-- ..................................................  Control
CT0134489      <-- ..................................................  Control
CT0134664      <-- ..................................................  Control
CT0135319      <-- ..................................................  Control
CT0136239      <-- ..................................................  Control
CT0137078      <-- ..................................................  Control
CT0137137      <-- ..................................................  Control
CT0130536      <-- ..................................................  Control
CT0140301      <-- ..................................................  Control
CT0043306      <-- ..................................................  Control
ET0064423      <-- ..................................................  Ethylene
CT0010270      <-- ..................................................  Control
CT0001898      <-- ..................................................  Control
CT0042182      <-- ..................................................  Control
CT0009857      <-- ..................................................  Control
CT0091784      <-- ..................................................  Control
ET0121671      <-- ..................................................  Ethylene
ET0000533      <-- ..................................................  Ethylene
CT0071712      <-- ..................................................  Control
ET0008692      <-- ..................................................  Ethylene
ET0067940      <-- ..................................................  Ethylene
ET0071479      <-- ..................................................  Ethylene
ET0059718      <-- ..................................................  Ethylene
ET0132988      <-- ..................................................  Ethylene
ET0140986      <-- ..................................................  Ethylene
ET0142058      <-- ..................................................  Ethylene
CT0005946      <-- ..................................................  Control
ET0013269      <-- ..................................................  Ethylene
ET0142408      <-- ..................................................  Ethylene
RH21W72        --> TGAGATTGTTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  WaterDS
RH27AC281      --> TGAGATTGTTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  WaterDS
CT0030937      --> TGAGATCGCCGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Control
ET0042144      --> TGAGATCGCCGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Ethylene
CT0055095      --> TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Control
ET0111661      --> TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Ethylene
ET0022135      --> TGAGATTGCTGAGGCTTACCTTGGTTCCACCATCAAGAATGCAGTGGTCA  Ethylene
ET0033979      --> TGAGATTGCTGAGGCTTACCTTGGTTCCACCATC................  Ethylene
ET0008724      --> ..............................................GTCA  Ethylene
ET0011539      --> ................................................CA  Ethylene
CT0031371      --> ..................................................  Control
CT0059031      --> ..................................................  Control
ET0008152      --> ..................................................  Ethylene
ET0019624      --> ..................................................  Ethylene
RH07C269       --> ..................................................  WaterDS
ET0116265      --> ..................................................  Ethylene
ET0037526      --> ..................................................  Ethylene
ET0113373      --> ..................................................  Ethylene
CT0009656      --> ..................................................  Control
CT0057517      --> ..................................................  Control
ET0047223      --> ..................................................  Ethylene
ET0113488      --> ..................................................  Ethylene
CT0008461      --> ..................................................  Control
CT0003920      --> ..................................................  Control
CT0084815      --> ..................................................  Control
CT0051248      --> ..................................................  Control
CT0114759      --> ..................................................  Control
CT0068872      --> ..................................................  Control
ET0070037      --> ..................................................  Ethylene
ET0103463      --> ..................................................  Ethylene
CT0080686      --> ..................................................  Control
CT0094109      --> ..................................................  Control
CT0139027      --> ..................................................  Control
ET0070010      --> ..................................................  Ethylene
ET0017327      --> ..................................................  Ethylene
ET0033895      --> ..................................................  Ethylene
ET0121508      --> ..................................................  Ethylene
CT0122977      --> ..................................................  Control
ET0131600      --> ..................................................  Ethylene
ET0132211      --> ..................................................  Ethylene
ET0133133      --> ..................................................  Ethylene
ET0120488      --> ..................................................  Ethylene
ET0126242      --> ..................................................  Ethylene
CT0059825      --> ..................................................  Control
CT0072999      --> ..................................................  Control
CT0069409      --> ..................................................  Control
ET0012032      --> ..................................................  Ethylene
ET0035299      --> ..................................................  Ethylene
ET0130298      --> ..................................................  Ethylene
ET0022098      --> ..................................................  Ethylene
ET0113083      --> ..................................................  Ethylene
CT0072070      --> ..................................................  Control
ET0146508      --> ..................................................  Ethylene
ET0147157      --> ..................................................  Ethylene
ET0084570      --> ..................................................  Ethylene
CT0131998      --> ..................................................  Control
CT0060399      --> ..................................................  Control
CT0089045      --> ..................................................  Control
ET0069959      --> ..................................................  Ethylene
ET0071279      --> ..................................................  Ethylene
ET0071712      --> ..................................................  Ethylene
ET0092993      --> ..................................................  Ethylene
ET0098659      --> ..................................................  Ethylene
ET0099322      --> ..................................................  Ethylene
ET0003992      --> ..................................................  Ethylene
ET0068149      --> ..................................................  Ethylene
CT0077059      --> ..................................................  Control
CT0081557      --> ..................................................  Control
ET0017362      --> ..................................................  Ethylene

               526    -    576
RU06295        --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
CT0094685      <-- CTGTCCCTGCT.......................................
ET0059878      <-- ..................................................
CT0094709      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0057302      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0058734      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0067419      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0091421      <-- CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
RH27AC281      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
CT0030937      --> CTGT..............................................
ET0042144      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGG.....
CT0055095      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0111661      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCATCAAGcaga..
ET0022135      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0033979      --> ..................................................
ET0008724      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
ET0011539      --> CTGTCCCTGCTTACTTTAACGATTCTCAGCGTCAGGCCACCAAGGATGCC
CT0031371      --> .......................TCTCAGCGTCAGGCCACCAAGGATGCC
CT0059031      --> .......................TCTCAGCGTCAGGCCACCAAGGATGCC
ET0008152      --> .........................TCAGCGTCAGGCCACCAAGGATGCC
ET0019624      --> .........................TCAGCGTCAGGCCACCAAGGATGCC
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               576    -    626
RU06295        --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- GGAGTT-ATTGCT.....................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0057302      <-- GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0058734      <-- GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0067419      <-- GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0091421      <-- GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0001958      <-- ...................................TCAACGAGCCTACAG
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
RH27AC281      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> GGAGTT-ATTG.......................................
ET0111661      --> ..................................................
ET0022135      --> GGAGTTTATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0033979      --> ..................................................
ET0008724      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0011539      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
CT0031371      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
CT0059031      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0008152      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
ET0019624      --> GGAGTT-ATTGCTGGTATCAATGTCTTGCGTATTATCAACGAGCCTACAG
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               626    -    676
RU06295        --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGT...
ET0057302      <-- CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0058734      <-- CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0067419      <-- CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0091421      <-- CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0001958      <-- CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
RH27AC281      --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> CAGCTGCCATCGCCTATGGT..............................
ET0033979      --> ..................................................
ET0008724      --> CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0011539      --> CAGCTGCCATTGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
CT0031371      --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
CT0059031      --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0008152      --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
ET0019624      --> CAGCTGCCATCGCCTATGGTCTTGACAAGAAGGCCACCAGCGTTGGTGAG
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               676    -    726
RU06295        --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- AAGAATGTGTTGATC...................................
ET0058734      <-- AAGAATGTGTTGATC...................................
ET0067419      <-- AAGAATGTGTTGATC...................................
ET0091421      <-- AAGAATGTGTTGATC...................................
ET0001958      <-- AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCTCT
CT0021261      <-- .............................TGGTACCTTTGATGTCTCTCT
ET0126124      <-- .................................ccgTTTGATGTCTCTCT
ET0126729      <-- ...................................tttaGATGTCTCTCT
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGT.................
RH27AC281      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGT.................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCTCT
ET0011539      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCT....
CT0031371      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGT......
CT0059031      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGT......
ET0008152      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCTCT
ET0019624      --> AAGAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCTCT
RH07C269       --> ...............................GTACCTTTGATGTCTCTCT
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               726    -    776
RU06295        --> TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACTGCTGGTGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACTGCTGGTGACA
CT0021261      <-- TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACAGCTGGTGACA
ET0126124      <-- TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACTGCTGGTGACA
ET0126729      <-- TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACTGCTGGTGACA
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> TCTAACCATTGAAGAGGGTATCTTTGAGGTTAA.................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> TCTAACCATTGAA.....................................
ET0019624      --> TCTAACCATTGAA.....................................
RH07C269       --> TCTAACCATTGAAGAGGGTATCTTTGAGGTTAAGGCCACTGCTGGTGACG
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               776    -    826
RU06295        --> CCCATCTTGGGGGTGAGGACTTTGACAACAGAATGGTCAACCACTTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- CCCATCTTGGGGGTGAGGACTTTGACAACAGAATGGTCAACCACTTCGTT
CT0021261      <-- CCCATCTTGGGGGTGAGGACTTTGACAACAGAATGGTCAACCACTTTGTT
ET0126124      <-- CCCATCTTGGGGGTGAGGACTTTGACAACAGAATGGTCAACCACTTCGTT
ET0126729      <-- CCCATCTTGGGG-TGAGGACTTTGACAACAGAATGGTCAACCACTTCGTT
ET0028015      <-- ...............AGGACTTTGACAACAGAATGGTCAACCACTTTGTT
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> CCCATCTTGGGGGTGAGGACTTTGACAACAGAATGGTCAACCACTTCGTT
ET0116265      --> .......................................cctACTTCGTT
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               826    -    876
RU06295        --> CAAGAGTT-CAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- CAAGAGTT-CAAGAGAAAGAACAAGAAGGAT...................
CT0021261      <-- CAAGAGTT-CAAGAG...................................
ET0126124      <-- CAAGAGTT-CAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
ET0126729      <-- CAAGAGTT-CAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
ET0028015      <-- CAAGAGTT-CAAGAGAAAGAACAAGAAGGATATCAGCGGCAACCCCAGAG
CT0127823      <-- .......T-CAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
ET0062471      <-- .................................cAGCGGCAACCCCAGAG
CT0119372      <-- ...................................GCGGCAACCCCAGAG
CT0120499      <-- ...................................GCGGCAACCCCAGAG
CT0121533      <-- ...................................GCGGCAACCCCAGAG
CT0121909      <-- ...................................GCGGCAACCCCAGAG
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> CAAGAGTT-CAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
ET0116265      --> CAAGAGTTTCAAGAGAAAGAACAAGAAGGATATAAGCGGCAACCCCAGAG
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               876    -    926
RU06295        --> CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0126729      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0028015      <-- CTCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0127823      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0062471      <-- CTCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0119372      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0120499      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0121533      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0121909      <-- CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0093451      <-- .......................TGTGAAAGGGCGAAGAGGACCCTCTCA
CT0065376      <-- ........................GTGAAAGGGCGAAGAGGACCCTCTCA
ET0140157      <-- ..............................GGGCGAAGAGGACCCTCTCA
CT0017592      <-- .......................................GGACCCTCTCA
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0116265      --> CGCTTAGGAGATTGAGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0037526      --> ..............AGGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
ET0113373      --> ...............GGACATCATGTGAAAGGGCGAAGAGGACCCTCTCA
CT0009656      --> ....................................AGAGGACCCTCTCA
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               926    -    976
RU06295        --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- TCCACTGCCCAGACCACCATTGAAATCGATTtccttt.............
ET0126729      <-- TCCACTGCCCAGACCAC.................................
ET0028015      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0127823      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGA.........
ET0062471      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0119372      <-- TCCACTGCCCAGACCACCATTGAAATCGATTtcctttgttattgtagggt
CT0120499      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATT..
CT0121533      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATT..
CT0121909      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATT..
CT0093451      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0065376      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0140157      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0017592      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0074622      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0074920      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0075116      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0097616      <-- TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0100871      <-- .CCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0071426      <-- ..CACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0100872      <-- ..CACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0106379      <-- ..CACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0105588      <-- ...ACTGCCCAGAC-ACCATTGAAATCGAT-CCTTGTATGAGGGTATTGA
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0116265      --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0037526      --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
ET0113373      --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0009656      --> TCCACTGCCCAGACCACCATTGAAATCGATTCCTTGTATGAGGGTATTGA
CT0057517      --> ......................AAATCGATTCCTTGTATGAGGGTATTGA
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               976    -   1026
RU06295        --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0127823      <-- ..................................................
ET0062471      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0119372      <-- tattt.............................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0065376      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0140157      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0017592      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0074622      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0074920      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0075116      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0097616      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0100871      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0071426      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0100872      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0106379      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0105588      <-- CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0006014      <-- ............CATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> CTTCTACTCAACCATCACCCGTGATAGATTCGAGGAGCTCAACATGGACG
ET0116265      --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0037526      --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0113373      --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0009656      --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
CT0057517      --> CTTCTACTCAACCATCACCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0047223      --> .................CCCGTGCTAGATTCGAGGAGCTCAACATGGACT
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1026   -   1076
RU06295        --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- TG................................................
CT0127823      <-- ..................................................
ET0062471      <-- TGTTCAGAAAGTGTATGGAGCaatcacaagtagc................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
CT0065376      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0140157      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
CT0017592      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0074622      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0074920      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0075116      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0097616      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0100871      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0071426      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0100872      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0106379      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0105588      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0006014      <-- TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0131563      <-- ........................TAGAGAAGTGTTTGAGGGACGCCAAG
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0116265      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAG.....................
ET0037526      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTTTGAGGGACGCCAAG
ET0113373      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
CT0009656      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
CT0057517      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0047223      --> TGTTCAGAAAGTGTATGGAGCCAGTAGAGAAGTGTCTGAGGGACGCCAAG
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1076   -   1126
RU06295        --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC.
CT0065376      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCC.....
ET0140157      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTG-ATCCACC--
CT0017592      <-- ATGGACAAagaa......................................
ET0074622      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0074920      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0075116      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0097616      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0100871      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0071426      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCCC
ET0100872      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0106379      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0105588      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0006014      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTag............
ET0131563      <-- ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
RH14L31        <-- .......AGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
CT0078033      <-- ............................TGCTTGTTGGTGGATCCACCC-
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0116265      --> ..................................................
ET0037526      --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGG.........
ET0113373      --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTG..........
CT0009656      --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
CT0057517      --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0047223      --> ATGGACAAGAGCACAGTCCATGATGTTGTGCTTGTTGGTGGATCCACCC-
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1126   -   1176
RU06295        --> GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- GTATTCCC..........................................
CT0017592      <-- ..................................................
ET0074622      <-- GTATTCCCAAGGTTCAGCAAC-CC-T-CCAGGACTTT.............
ET0074920      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTT.............
ET0075116      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTT.............
ET0097616      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTT.............
ET0100871      <-- GTATTCCCAAGGTTCAGCAACTCCCT-CCAGGACTTT.............
ET0071426      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTT.............
ET0100872      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGAacttt............
ET0106379      <-- GTATTCCCAAGGTTCAGCAACTCC-TACCAGGAacttt............
ET0105588      <-- GTATTCCCAAGGTTCAGCAACTCCCT-CCAGGACTTT.............
ET0006014      <-- ..................................................
ET0131563      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
RH14L31        <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
CT0078033      <-- GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> GTATTCCCAAGGTTCA..................................
CT0057517      --> GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTT.............
ET0047223      --> GTATTCCCAAGGTTCAGCAACTCC-T-CCAGGACTTTTTCAATGGCAAGG
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1176   -   1226
RU06295        --> AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
RH14L31        <-- AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0078033      <-- AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0119991      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0120536      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0121076      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0121115      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0122129      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0122486      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0122670      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0123914      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0124175      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0125471      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0125951      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0126209      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0126587      <-- ....CTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0125714      <-- .....TGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0126349      <-- .....TGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0124332      <-- .........AGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTGCTGCA
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> AGCTCTGCAAGAGCATCAACCCCGACGAGGCCGTTGCCTATGGTG.....
ET0113488      --> ...............................CGTTGCCTATGGTGCTGCA
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1226   -   1276
RU06295        --> GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
RH14L31        <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0078033      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGT.........
CT0119991      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0120536      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0121076      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0121115      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0122129      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0122486      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0122670      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0123914      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0124175      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0125471      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0125951      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0126209      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0126587      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0125714      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0126349      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0124332      <-- GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0089605      <-- .............................TAACGAGAAGGTCCAGGACCT
ET0001153      <-- .............................TAACGAGAAGGTCCAGGACCT
ET0115152      <-- ...............................................CCT
ET0090043      <-- ................................................CT
CT0100659      <-- .................................................T
CT0102523      <-- .................................................T
CT0103647      <-- .................................................T
CT0103817      <-- .................................................T
CT0104669      <-- .................................................T
CT0107737      <-- .................................................T
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> GTTCAGGCTGCAATTCTCAGTGGTGAGGGTAACGAGAAGGTCCAGGACCT
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1276   -   1326
RU06295        --> TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- TCTTCTATTGGAT.....................................
RH14L31        <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0078033      <-- ..................................................
CT0119991      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0120536      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0121076      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0121115      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0122129      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0122486      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0122670      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0123914      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0124175      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0125471      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0125951      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0126209      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0126587      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0125714      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTTTGGAAACTGCCGGA
CT0126349      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0124332      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0089605      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
ET0001153      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
ET0115152      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
ET0090043      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0100659      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0102523      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0103647      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0103817      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0104669      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0107737      <-- TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> TCTTCTATTGGATGTTACCCCTCTATCCCTTGGTTT-GGAAACTGCCGGA
CT0008461      --> ..............................................CGGA
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1326   -   1376
RU06295        --> GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0078033      <-- ..................................................
CT0119991      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0120536      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0121076      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0121115      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0122129      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0122486      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0122670      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0123914      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0124175      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0125471      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0125951      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0126209      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0126587      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0125714      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0126349      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0124332      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0089605      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
ET0001153      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
ET0115152      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
ET0090043      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0100659      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0102523      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0103647      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0103817      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0104669      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0107737      <-- GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
ET0120346      <-- ........................cGAAATACAACCATCCCAACAAAGAA
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0008461      --> GGTGTCATGACCGTCTTGATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0003920      --> ..................ATCCCCAGAAATACAACCATCCCAACAAAGAA
CT0084815      --> ...........................................CAAAGAA
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1376   -   1426
RU06295        --> GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0078033      <-- ..................................................
CT0119991      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0120536      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0121076      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0121115      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0122129      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0122486      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0122670      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0123914      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0124175      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0125471      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0125951      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0126209      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0126587      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0125714      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0126349      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAGACCTGGTagtagacta
CT0124332      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0089605      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
ET0001153      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
ET0115152      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
ET0090043      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0100659      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
CT0102523      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
CT0103647      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
CT0103817      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
CT0104669      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
CT0107737      <-- GGAACAGGTCTTCTCCACCTATTCCGACAACCAG-CCTGGTGTGCTCATC
ET0120346      <-- GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
ET0085744      <-- ..AACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0087196      <-- .....................................TGGTGTGCTCATC
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0008461      --> GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0003920      --> GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0084815      --> GGAACAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0051248      --> ....CAGGTCTTCTCCACCTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0114759      --> ..................CTACTCCGACAACCAG-CCTGGTGTGCTCATC
CT0068872      --> ..............................CCAG-CCTGGTGTGCTCATC
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1426   -   1476
RU06295        --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0078033      <-- ..................................................
CT0119991      <-- CAGGTC............................................
CT0120536      <-- CAGGTC............................................
CT0121076      <-- CAGGTC............................................
CT0121115      <-- CAGGTC............................................
CT0122129      <-- CAGGTC............................................
CT0122486      <-- CAGGTC............................................
CT0122670      <-- CAGGTC............................................
CT0123914      <-- CAGGTC............................................
CT0124175      <-- CAGGTC............................................
CT0125471      <-- CAGGTC............................................
CT0125951      <-- CAGGTC............................................
CT0126209      <-- CAGGTC............................................
CT0126587      <-- CAaggtac..........................................
CT0125714      <-- CAGGTC............................................
CT0126349      <-- caataccaaggtac....................................
CT0124332      <-- CAGGTC............................................
CT0089605      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCA...................
ET0001153      <-- CAGGTCTATGAA......................................
ET0115152      <-- CAGGTCTATGAAGGAG..................................
ET0090043      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0100659      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTC.
CT0102523      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTC.
CT0103647      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACtaactaactttgt
CT0103817      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTC.
CT0104669      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTac
CT0107737      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTC.
ET0120346      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
ET0085744      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0087196      <-- CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> CAGGTCTATGAAGGAGAGAGGACCAGAAACAGGGGACAACA-CTTGCTCG
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-A..............
CT0008461      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTG....
CT0003920      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0084815      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0051248      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0114759      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
CT0068872      --> CAGGTCTATGAAGGAGAGAGAACCAGAACCAGGG-ACAACAACTTGCTCG
ET0070037      --> ..........................................CTTGCTCG
ET0103463      --> ...........................................TTGCTCG
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1476   -   1526
RU06295        --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGT.......
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- cttc..............................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
ET0085744      <-- GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0087196      <-- GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCC................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0084815      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0051248      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0114759      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0068872      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
ET0070037      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
ET0103463      --> GAAAGTTTGAACTCTCCGGAATCCCCCCAGCTCCCAGAGGTGTACCCCAG
CT0080686      --> .......................CCCCCAGCTCCCAGAGGTGTACCCCAG
CT0094109      --> ......................................GGTGTACCCCAG
CT0139027      --> ..................................................
ET0070010      --> ...................................cccctagtattctac
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1526   -   1576
RU06295        --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ATCACAGTGTag......................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
ET0085744      <-- ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0087196      <-- ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0130798      <-- .......................CGCCAATGGTATCTTGAATGTGTCAGC
CT0129187      <-- ....................................TTGAATGTGTCAGC
CT0131243      <-- ....................................TTGAATGTGTCAGC
CT0132295      <-- ....................................TTGAATGTGTCAGC
CT0132437      <-- ....................................TTGAATGTGTCAGC
CT0132842      <-- ....................................TTGAATGTGTCAGC
CT0133044      <-- ....................................TTGAATGTGTCAGC
CT0133144      <-- ....................................TTGAATGTGTCAGC
CT0134078      <-- ....................................TTGAATGTGTCAGC
CT0134489      <-- ....................................TTGAATGTGTCAGC
CT0134664      <-- ....................................TTGAATGTGTCAGC
CT0135319      <-- ....................................TTGAATGTGTCAGC
CT0136239      <-- ....................................TTGAATGTGTCAGC
CT0137078      <-- ....................................TTGAATGTGTCAGC
CT0137137      <-- ....................................TTGAATGTGTCAGC
CT0130536      <-- .....................................TGAATGTGTCAGC
CT0140301      <-- .....................................TGAATGTGTCAGC
CT0043306      <-- .............................................TCAGC
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0084815      --> ATCACAGTGTGCTTT...................................
CT0051248      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0114759      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0068872      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
ET0070037      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
ET0103463      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0080686      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0094109      --> ATCACAGTGTGCTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
CT0139027      --> ...........CTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
ET0070010      --> tagttgttgtctTTTGACATCGACGCCAATGGTATCTTGAATGTGTCAGC
ET0017327      --> ..............................GGTATCTTGAATGTGTCAGC
ET0033895      --> ..............................GGTATCTTGAATGTGTCAGC
ET0121508      --> ...................................CTTGAATGTGTCAGC
CT0122977      --> ........................................ATGTGTCAGC
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1576   -   1626
RU06295        --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- AGAGGACAAGACCACTGGG-CAAAA.........................
ET0085744      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACC....
CT0087196      <-- AGAGGACAAGACCACTG.................................
CT0130798      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0129187      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0131243      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0132295      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0132437      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0132842      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0133044      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0133144      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0134078      <-- AGAGGACAAGACCACTGGG-CAAAA-GAAACAAGATCACCATCACCAACG
CT0134489      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0134664      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0135319      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0136239      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0137078      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0137137      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0130536      <-- AGAGGACAAGACCACTGGG-CAAAA-GAAACAAGATCACCATCACCAACG
CT0140301      <-- AGAGGACAAGACCACTGGG-CAAA--GAA-CAAGATCACCATCACCAACG
CT0043306      <-- AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> AGAGGACAAG........................................
CT0084815      --> ..................................................
CT0051248      --> AGAGGACAAGACCACTGGG-CAAAAAGAA-CAAGATCACCATCACCAACG
CT0114759      --> AGAGGACAAGACCACTGGGACAAAAAGAA-CAAGATCACCAT........
CT0068872      --> AGAGGACAAGACCACTG.................................
ET0070037      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0103463      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0080686      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGA...............
CT0094109      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0139027      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0070010      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0017327      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0033895      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0121508      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0122977      --> AGAGGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0131600      --> ...GGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0132211      --> ...GGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0133133      --> ...GGACAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0120488      --> ......CAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
ET0126242      --> ......CAAGACCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0059825      --> ...........CCACTGGG-CAAAAAGAA-CAAGATCACCATCACCAACG
CT0072999      --> ...........CCACTGGG-CAAAA-GAA-CAAGATCACCATCACCAACG
CT0069409      --> .........cctactgggtcaAAAA-GAA-CAAGATCACCATCACCAACG
ET0012032      --> .................................................G
ET0035299      --> .................................................G
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1626   -   1676
RU06295        --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0129187      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0131243      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAAAGATGGTTCAAGAGG-
CT0132295      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0132437      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0132842      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0133044      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0133144      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0134078      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0134489      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0134664      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0135319      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0136239      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0137078      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0137137      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0130536      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0140301      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGGG
CT0043306      <-- ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0064423      <-- ...........................TTGAAAA-GATGGTTCAAGAGG-
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0103463      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0080686      --> ..................................................
CT0094109      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0139027      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0070010      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0017327      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0033895      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0121508      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0122977      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0131600      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0132211      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0133133      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0120488      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0126242      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0059825      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0072999      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
CT0069409      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0012032      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0035299      --> ACAAGGGCAGGCTCTCAAAGGAGGAGATTGAAAA-GATGGTTCAAGAGG-
ET0130298      --> .....................agtatttgtAAAA-GATGGTTCAAGAGG-
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1676   -   1726
RU06295        --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0129187      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0131243      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0132295      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0132437      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0132842      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0133044      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0133144      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0134078      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0134489      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0134664      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0135319      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0136239      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTtgtagg
CT0137078      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGG..
CT0137137      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0130536      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0140301      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0043306      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGcaggt
ET0064423      <-- CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0010270      <-- .....................ATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0001898      <-- ....................................AGAAGGTTGAGGCC
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCAa..................
ET0103463      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCAa..................
CT0080686      --> ..................................................
CT0094109      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0139027      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0070010      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0017327      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0033895      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0121508      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0122977      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0131600      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0132211      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0133133      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0120488      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0126242      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0059825      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0072999      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0069409      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0012032      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0035299      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0130298      --> CAGAGAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0022098      --> ....GAAGTACAAGTCTGAGGATGAAGAGCACAAGAAGAAGGTTGAGGCC
ET0113083      --> ...................GGATGAAGAGCACAAGAAGAAGGTTGAGGCC
CT0072070      --> .........................AGAGCACAAGAAGAAGGTTGAGGCC
ET0146508      --> ............................GCACAAGAAGAAGGTTGAGGCC
ET0147157      --> ............................GCACAAGAAGAAGGTTGAGGCC
ET0084570      --> ...................................aaaggttagaAGGCC
CT0131998      --> ................................................CC
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1726   -   1776
RU06295        --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0129187      <-- A.................................................
CT0131243      <-- A.................................................
CT0132295      <-- A.................................................
CT0132437      <-- A.................................................
CT0132842      <-- A.................................................
CT0133044      <-- A.................................................
CT0133144      <-- A.................................................
CT0134078      <-- A.................................................
CT0134489      <-- A.................................................
CT0134664      <-- A.................................................
CT0135319      <-- A.................................................
CT0136239      <-- tccta.............................................
CT0137078      <-- ..................................................
CT0137137      <-- A.................................................
CT0130536      <-- A.................................................
CT0140301      <-- A.................................................
CT0043306      <-- aaagaagag.........................................
ET0064423      <-- AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
CT0010270      <-- AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0001898      <-- AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0042182      <-- ........CTTTGGAGAACTATGCCTACAACATGAGGAACACG.......
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> AA-GAACGCTTTGGAGAACTACGCCTAa......................
CT0139027      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0070010      --> AA-GAACGCTTTGGAGAACTACGCCTACAACA..................
ET0017327      --> AA-GA.............................................
ET0033895      --> AA-GA.............................................
ET0121508      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0122977      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0131600      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0132211      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0133133      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0120488      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0126242      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0059825      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0072999      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0069409      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0012032      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0035299      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0130298      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0022098      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0113083      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
CT0072070      --> AA-GAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
ET0146508      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0147157      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
ET0084570      --> AAAGAACGCTTTGGAGAACTACGCCTACAACATGAGGAACACGATCAAGG
CT0131998      --> AA-GAACGCTTTGGAGAACTATGCCTACAACATGAGGAACACGATCAAGG
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1776   -   1826
RU06295        --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0010270      <-- ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0001898      <-- ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCC................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ATGA-GAAGATCGGTGAGAAGCTCCCg.......................
CT0122977      --> ATGAAAAAGATCGGTGAGAAGCTCCCga......................
ET0131600      --> ATGA-AAAGATCGGTGAGAAGCT...........................
ET0132211      --> ATGA-AAAGATCGGTGAGAAGCT...........................
ET0133133      --> ATGA-AAAGATCGGTGAGAAGCT...........................
ET0120488      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCC................
ET0126242      --> ATGA-GAAGATCGGTGAGAAGCTCCCGAGGGGCC................
CT0059825      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCC-ACAAGAAGAAGATCG
CT0072999      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCC................
CT0069409      --> ATGA-GAAGATCGGTGAGAAGCTCC.........................
ET0012032      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0035299      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0130298      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0022098      --> ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0113083      --> ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0072070      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0146508      --> ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0147157      --> ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
ET0084570      --> ATGA-GAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0131998      --> ATGA-AAAGATCGGTGAGAAGCTCCC-AGGGGCCGACAAGAAGAAGATCG
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1826   -   1876
RU06295        --> AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAGCAACCAACTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- AGGACGCCATTGAGGCTGCTATCCAGTGG.....................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0010270      <-- AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0001898      <-- AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0042182      <-- ..................................................
CT0009857      <-- .............................CTCGACAGCAACCAACTTGCC
CT0091784      <-- ..................................................
ET0121671      <-- ..................................................
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> AGGACGCC..........................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAG.............
ET0035299      --> AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAG.............
ET0130298      --> AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAGCAACCAACTTGCC
ET0022098      --> AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
ET0113083      --> AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0072070      --> AGGACGCCATTGAGGCTGCTATCCAGgt......................
ET0146508      --> AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
ET0147157      --> AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
ET0084570      --> AGGACGCCATTGAGGCTGCTATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0131998      --> AGGACGCCATTGAGGCTGCCATCCAGTGGCTCGACAGCAACCAACTTGCC
CT0060399      --> .........................................CAACTTGCC
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..............................................aggc
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1876   -   1926
RU06295        --> G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- G-AGGCTGA-TG......................................
CT0010270      <-- G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATC.
CT0001898      <-- G-AGGCTGA-T.......................................
CT0042182      <-- ..................................................
CT0009857      <-- G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
CT0091784      <-- ..............................AA-GGAGTTGGAGAGCATCT
ET0121671      <-- ...................................AGTTGGAGAGCATCT
ET0000533      <-- ..................................................
CT0071712      <-- ..................................................
ET0008692      <-- ..................................................
ET0067940      <-- ..................................................
ET0071479      <-- ..................................................
ET0059718      <-- ..................................................
ET0132988      <-- ..................................................
ET0140986      <-- ..................................................
ET0142058      <-- ..................................................
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> G-AGGCT...........................................
ET0022098      --> G.................................................
ET0113083      --> G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
CT0072070      --> ..................................................
ET0146508      --> G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0147157      --> G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0084570      --> G-AGGCTGA-TGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
CT0131998      --> G-AGGCTGA-TGAGTTTGAAGACGAAGATGAA-GGAGTTGGAGAGCATCT
CT0060399      --> GGAGGCTGAATGAGTTTGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
CT0089045      --> .............GTTTGAAGAC-AAGATGAAAGGAGTTGGAGAGCATCT
ET0069959      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0071279      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0071712      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0092993      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0098659      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0099322      --> ................TGAAGAC-AAGATGAA-GGAGTTGGAGAGCATCT
ET0003992      --> .........................AGATGAA-GGAGTTGGAGAGCATCT
ET0068149      --> tgtattgtagttttgtaagtactaagtATGAA-GGAGTTGGAGAGCATCT
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1926   -   1976
RU06295        --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
CT0091784      <-- GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0121671      <-- GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0000533      <-- ...............................TGCTGGGCCTGACGGTGCT
CT0071712      <-- .................................CTGGGCCTGACGGTGCT
ET0008692      <-- ..................................TGGGCCTGACGGTGCT
ET0067940      <-- ..................................TGGGCCTGACGGTGCT
ET0071479      <-- .........................................GACGGTGCT
ET0059718      <-- ..........................................ACGGTGCT
ET0132988      <-- ..........................................ACGGTGCT
ET0140986      <-- ..........................................ACGGTGCT
ET0142058      <-- .............................................GTGCT
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> Ga................................................
CT0072070      --> ..................................................
ET0146508      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0147157      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0084570      --> GCAACCCAATCATCGCCAAG..............................
CT0131998      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
CT0060399      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
CT0089045      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0069959      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0071279      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0071712      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0092993      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0098659      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0099322      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0003992      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
ET0068149      --> GCAACCCAATCATCGCCAAGATGTACCAGGGTGCTGGGCCTGACGGTGCT
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               1976   -   2026
RU06295        --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
CT0091784      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0121671      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0000533      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
CT0071712      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0008692      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0067940      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0071479      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0059718      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0132988      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0140986      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0142058      <-- GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
CT0005946      <-- ..................................................
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> GGCCCAGTTGATGATGATGTT.............................
ET0147157      --> GGCCCAGTTGATGATGATGTT.............................
ET0084570      --> ..................................................
CT0131998      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGT...........
CT0060399      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGG-CAGCGGTGCTGGGCCTAA
CT0089045      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0069959      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0071279      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0071712      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0092993      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGG-CAGCGGTGCTGGGCCTAA
ET0098659      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0099322      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
ET0003992      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCT........
ET0068149      --> GGCCCAGTTGATGATGATGTTCCAGCTGGGGGCAGCGGTGCTGGGCCTAA
CT0077059      --> ..................................................
CT0081557      --> ..................................................
ET0017362      --> ..................................................

               2026   -   2076
RU06295        --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
CT0091784      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0121671      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0000533      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
CT0071712      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0008692      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0067940      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0071479      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0059718      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0132988      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTCGTTT
ET0140986      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0142058      <-- GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
CT0005946      <-- ...................................TGGGTGGCTTTGTTG
ET0013269      <-- ..................................................
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> GATCGAGGAGGTCGACTAAGTGAAATGACTCCCCGTGGGTG.........
CT0089045      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0069959      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0071279      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0071712      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0092993      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0098659      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0099322      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
ET0003992      --> ..................................................
ET0068149      --> GATCGAGGAGGTCGACTAAGTGAAATGA-TCCCCGTGGGTGGCTTTGTTG
CT0077059      --> ....................TGAAATGA-TCCCCGTGGGTGGCTTCGTTT
CT0081557      --> ........................ATGA-TCCCCGTGGGTGGCTTTGTTG
ET0017362      --> ..................................................

               2076   -   2126
RU06295        --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- -CTTT.............................................
CT0091784      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0121671      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0000533      <-- -CTTTTTGGATT......................................
CT0071712      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0008692      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0067940      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0071479      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0059718      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0132988      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0140986      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0142058      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTTTA
CT0005946      <-- -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0013269      <-- ........................................CG-CGTTT-A
ET0142408      <-- ..................................................
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTTTATCG-CGTTTTA
ET0069959      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTTTATCG-CGTTTtt
ET0071279      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTTtt
ET0071712      --> -CTTTTTGGATTTATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTTtt
ET0092993      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTTt............
ET0098659      --> TCTTTTTGGATT-ATTTAGGCGGTCTGGAACTAATTT-ATCGTCGTTTtt
ET0099322      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCGTCGTTTtt
ET0003992      --> ..................................................
ET0068149      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTTtt
CT0077059      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
CT0081557      --> -CTTTTTGGATT-ATTTAGGCGGTCTGGAAC-AATTT-ATCG-CGTTT-A
ET0017362      --> ..................................................

               2126   -   2176
RU06295        --> TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGT...........
ET0121671      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0000533      <-- ..................................................
CT0071712      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0008692      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0067940      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0071479      <-- TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0059718      <-- TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0132988      <-- TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0140986      <-- TTTTTAATTTTTGCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0142058      <-- TTTTTAATTTTTGCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
CT0005946      <-- TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0013269      <-- TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0142408      <-- ...........................................gctgaac
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> TTTTTAATTTT-GCTTT.................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> a.................................................
CT0077059      --> TTTTTAATTTT-ACTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
CT0081557      --> TTTTTAATTTT-GCTTTGATTGTTAATCAGAGCTTTTGTTTTTATTTTTT
ET0017362      --> ..................................................

               2176   -   2226
RU06295        --> GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- ..................................................
ET0061029      <-- ..................................................
ET0010237      <-- ..................................................
ET0144992      <-- ..................................................
CT0094685      <-- ..................................................
ET0059878      <-- ..................................................
CT0094709      <-- ..................................................
ET0057302      <-- ..................................................
ET0058734      <-- ..................................................
ET0067419      <-- ..................................................
ET0091421      <-- ..................................................
ET0001958      <-- ..................................................
CT0021261      <-- ..................................................
ET0126124      <-- ..................................................
ET0126729      <-- ..................................................
ET0028015      <-- ..................................................
CT0127823      <-- ..................................................
ET0062471      <-- ..................................................
CT0119372      <-- ..................................................
CT0120499      <-- ..................................................
CT0121533      <-- ..................................................
CT0121909      <-- ..................................................
CT0093451      <-- ..................................................
CT0065376      <-- ..................................................
ET0140157      <-- ..................................................
CT0017592      <-- ..................................................
ET0074622      <-- ..................................................
ET0074920      <-- ..................................................
ET0075116      <-- ..................................................
ET0097616      <-- ..................................................
ET0100871      <-- ..................................................
ET0071426      <-- ..................................................
ET0100872      <-- ..................................................
ET0106379      <-- ..................................................
ET0105588      <-- ..................................................
ET0006014      <-- ..................................................
ET0131563      <-- ..................................................
RH14L31        <-- ..................................................
CT0078033      <-- ..................................................
CT0119991      <-- ..................................................
CT0120536      <-- ..................................................
CT0121076      <-- ..................................................
CT0121115      <-- ..................................................
CT0122129      <-- ..................................................
CT0122486      <-- ..................................................
CT0122670      <-- ..................................................
CT0123914      <-- ..................................................
CT0124175      <-- ..................................................
CT0125471      <-- ..................................................
CT0125951      <-- ..................................................
CT0126209      <-- ..................................................
CT0126587      <-- ..................................................
CT0125714      <-- ..................................................
CT0126349      <-- ..................................................
CT0124332      <-- ..................................................
CT0089605      <-- ..................................................
ET0001153      <-- ..................................................
ET0115152      <-- ..................................................
ET0090043      <-- ..................................................
CT0100659      <-- ..................................................
CT0102523      <-- ..................................................
CT0103647      <-- ..................................................
CT0103817      <-- ..................................................
CT0104669      <-- ..................................................
CT0107737      <-- ..................................................
ET0120346      <-- ..................................................
ET0085744      <-- ..................................................
CT0087196      <-- ..................................................
CT0130798      <-- ..................................................
CT0129187      <-- ..................................................
CT0131243      <-- ..................................................
CT0132295      <-- ..................................................
CT0132437      <-- ..................................................
CT0132842      <-- ..................................................
CT0133044      <-- ..................................................
CT0133144      <-- ..................................................
CT0134078      <-- ..................................................
CT0134489      <-- ..................................................
CT0134664      <-- ..................................................
CT0135319      <-- ..................................................
CT0136239      <-- ..................................................
CT0137078      <-- ..................................................
CT0137137      <-- ..................................................
CT0130536      <-- ..................................................
CT0140301      <-- ..................................................
CT0043306      <-- ..................................................
ET0064423      <-- ..................................................
CT0010270      <-- ..................................................
CT0001898      <-- ..................................................
CT0042182      <-- ..................................................
CT0009857      <-- ..................................................
CT0091784      <-- ..................................................
ET0121671      <-- G.................................................
ET0000533      <-- ..................................................
CT0071712      <-- GCTGAACTTGGAGGCCCTTTGTT--ATTTTCCCCGGG-CAATTTGTCTGG
ET0008692      <-- GCTGAACTTGGAGGCCCTTTGTT--ATTTTCCCCGGG-CAATTTGTCTGG
ET0067940      <-- GCTGAACTTGGAGGCCCTTTGTT--ATTTTCCCCCGGGCAATTTGTCTGG
ET0071479      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0059718      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0132988      <-- GCTGAACTTGGAGGCCCTTTGTT--ATTTTCCCCGGG-CAATTTGTCTGG
ET0140986      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0142058      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
CT0005946      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0013269      <-- GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0142408      <-- ttggaggccctttG-------TT--ATTTTCCCCGGG-CAATTTGTCTGG
RH21W72        --> ..................................................
RH27AC281      --> ..................................................
CT0030937      --> ..................................................
ET0042144      --> ..................................................
CT0055095      --> ..................................................
ET0111661      --> ..................................................
ET0022135      --> ..................................................
ET0033979      --> ..................................................
ET0008724      --> ..................................................
ET0011539      --> ..................................................
CT0031371      --> ..................................................
CT0059031      --> ..................................................
ET0008152      --> ..................................................
ET0019624      --> ..................................................
RH07C269       --> ..................................................
ET0116265      --> ..................................................
ET0037526      --> ..................................................
ET0113373      --> ..................................................
CT0009656      --> ..................................................
CT0057517      --> ..................................................
ET0047223      --> ..................................................
ET0113488      --> ..................................................
CT0008461      --> ..................................................
CT0003920      --> ..................................................
CT0084815      --> ..................................................
CT0051248      --> ..................................................
CT0114759      --> ..................................................
CT0068872      --> ..................................................
ET0070037      --> ..................................................
ET0103463      --> ..................................................
CT0080686      --> ..................................................
CT0094109      --> ..................................................
CT0139027      --> ..................................................
ET0070010      --> ..................................................
ET0017327      --> ..................................................
ET0033895      --> ..................................................
ET0121508      --> ..................................................
CT0122977      --> ..................................................
ET0131600      --> ..................................................
ET0132211      --> ..................................................
ET0133133      --> ..................................................
ET0120488      --> ..................................................
ET0126242      --> ..................................................
CT0059825      --> ..................................................
CT0072999      --> ..................................................
CT0069409      --> ..................................................
ET0012032      --> ..................................................
ET0035299      --> ..................................................
ET0130298      --> ..................................................
ET0022098      --> ..................................................
ET0113083      --> ..................................................
CT0072070      --> ..................................................
ET0146508      --> ..................................................
ET0147157      --> ..................................................
ET0084570      --> ..................................................
CT0131998      --> ..................................................
CT0060399      --> ..................................................
CT0089045      --> ..................................................
ET0069959      --> ..................................................
ET0071279      --> ..................................................
ET0071712      --> ..................................................
ET0092993      --> ..................................................
ET0098659      --> ..................................................
ET0099322      --> ..................................................
ET0003992      --> ..................................................
ET0068149      --> ..................................................
CT0077059      --> GCTGAACTTGGAGG---CCCTTTGTATTTTCCCCGGG-CAATTTGTCTGG
CT0081557      --> GCGGAACA---AAG-------TT--ATTTTCCCCTGG-CAATTTGTCTGG
ET0017362      --> ..............................CCCCGGG-CAATTTGTCTGG

               2226   -   2276
RU06295        --> GGCCTTTATTATAATATTTTTCAACTATTCGGTGCTAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0129771      <-- .............................................
ET0061029      <-- .............................................
ET0010237      <-- .............................................
ET0144992      <-- .............................................
CT0094685      <-- .............................................
ET0059878      <-- .............................................
CT0094709      <-- .............................................
ET0057302      <-- .............................................
ET0058734      <-- .............................................
ET0067419      <-- .............................................
ET0091421      <-- .............................................
ET0001958      <-- .............................................
CT0021261      <-- .............................................
ET0126124      <-- .............................................
ET0126729      <-- .............................................
ET0028015      <-- .............................................
CT0127823      <-- .............................................
ET0062471      <-- .............................................
CT0119372      <-- .............................................
CT0120499      <-- .............................................
CT0121533      <-- .............................................
CT0121909      <-- .............................................
CT0093451      <-- .............................................
CT0065376      <-- .............................................
ET0140157      <-- .............................................
CT0017592      <-- .............................................
ET0074622      <-- .............................................
ET0074920      <-- .............................................
ET0075116      <-- .............................................
ET0097616      <-- .............................................
ET0100871      <-- .............................................
ET0071426      <-- .............................................
ET0100872      <-- .............................................
ET0106379      <-- .............................................
ET0105588      <-- .............................................
ET0006014      <-- .............................................
ET0131563      <-- .............................................
RH14L31        <-- .............................................
CT0078033      <-- .............................................
CT0119991      <-- .............................................
CT0120536      <-- .............................................
CT0121076      <-- .............................................
CT0121115      <-- .............................................
CT0122129      <-- .............................................
CT0122486      <-- .............................................
CT0122670      <-- .............................................
CT0123914      <-- .............................................
CT0124175      <-- .............................................
CT0125471      <-- .............................................
CT0125951      <-- .............................................
CT0126209      <-- .............................................
CT0126587      <-- .............................................
CT0125714      <-- .............................................
CT0126349      <-- .............................................
CT0124332      <-- .............................................
CT0089605      <-- .............................................
ET0001153      <-- .............................................
ET0115152      <-- .............................................
ET0090043      <-- .............................................
CT0100659      <-- .............................................
CT0102523      <-- .............................................
CT0103647      <-- .............................................
CT0103817      <-- .............................................
CT0104669      <-- .............................................
CT0107737      <-- .............................................
ET0120346      <-- .............................................
ET0085744      <-- .............................................
CT0087196      <-- .............................................
CT0130798      <-- .............................................
CT0129187      <-- .............................................
CT0131243      <-- .............................................
CT0132295      <-- .............................................
CT0132437      <-- .............................................
CT0132842      <-- .............................................
CT0133044      <-- .............................................
CT0133144      <-- .............................................
CT0134078      <-- .............................................
CT0134489      <-- .............................................
CT0134664      <-- .............................................
CT0135319      <-- .............................................
CT0136239      <-- .............................................
CT0137078      <-- .............................................
CT0137137      <-- .............................................
CT0130536      <-- .............................................
CT0140301      <-- .............................................
CT0043306      <-- .............................................
ET0064423      <-- .............................................
CT0010270      <-- .............................................
CT0001898      <-- .............................................
CT0042182      <-- .............................................
CT0009857      <-- .............................................
CT0091784      <-- .............................................
ET0121671      <-- .............................................
ET0000533      <-- .............................................
CT0071712      <-- GGCCTTTATTATAATATTTTTCAACT...................
ET0008692      <-- GGCCTTTATTATAATATTTTTCAACTAaaaaaaaa..........
ET0067940      <-- GGCCTTTATTATAATATTTTTCAACTAaa................
ET0071479      <-- GGCCTTTATTATAATATTTTTCAACTATTCGGTGCTAAAAAAAAA
ET0059718      <-- GGCCTTTATTATAATATTTTTCAACTATTCGGTGCTAAAAAAA..
ET0132988      <-- GGCCTTTATTATAATATTTTTCAACTATTCGGTGC..........
ET0140986      <-- GGCCTTTATTATAATATTTTTCAACTATTCGGTGact........
ET0142058      <-- GGCCTTTATTATAATATTTTTCAAactaattacggtagact....
CT0005946      <-- GGCCTTTATTATAATATTTT-CAACTAaaaaaaa...........
ET0013269      <-- GGCCTTTATTATAATATTTT-CAACTATTCGGTGCT.........
ET0142408      <-- GGCCTTTATTATAATATTTTTCAACTATTCGGTGCT.........
RH21W72        --> .............................................
RH27AC281      --> .............................................
CT0030937      --> .............................................
ET0042144      --> .............................................
CT0055095      --> .............................................
ET0111661      --> .............................................
ET0022135      --> .............................................
ET0033979      --> .............................................
ET0008724      --> .............................................
ET0011539      --> .............................................
CT0031371      --> .............................................
CT0059031      --> .............................................
ET0008152      --> .............................................
ET0019624      --> .............................................
RH07C269       --> .............................................
ET0116265      --> .............................................
ET0037526      --> .............................................
ET0113373      --> .............................................
CT0009656      --> .............................................
CT0057517      --> .............................................
ET0047223      --> .............................................
ET0113488      --> .............................................
CT0008461      --> .............................................
CT0003920      --> .............................................
CT0084815      --> .............................................
CT0051248      --> .............................................
CT0114759      --> .............................................
CT0068872      --> .............................................
ET0070037      --> .............................................
ET0103463      --> .............................................
CT0080686      --> .............................................
CT0094109      --> .............................................
CT0139027      --> .............................................
ET0070010      --> .............................................
ET0017327      --> .............................................
ET0033895      --> .............................................
ET0121508      --> .............................................
CT0122977      --> .............................................
ET0131600      --> .............................................
ET0132211      --> .............................................
ET0133133      --> .............................................
ET0120488      --> .............................................
ET0126242      --> .............................................
CT0059825      --> .............................................
CT0072999      --> .............................................
CT0069409      --> .............................................
ET0012032      --> .............................................
ET0035299      --> .............................................
ET0130298      --> .............................................
ET0022098      --> .............................................
ET0113083      --> .............................................
CT0072070      --> .............................................
ET0146508      --> .............................................
ET0147157      --> .............................................
ET0084570      --> .............................................
CT0131998      --> .............................................
CT0060399      --> .............................................
CT0089045      --> .............................................
ET0069959      --> .............................................
ET0071279      --> .............................................
ET0071712      --> .............................................
ET0092993      --> .............................................
ET0098659      --> .............................................
ET0099322      --> .............................................
ET0003992      --> .............................................
ET0068149      --> .............................................
CT0077059      --> GGCCTTTATTATAATATTTTTCAACTATTCGGTGact........
CT0081557      --> GGCCTTTATTATAATATTTTTCAACTATTCGGTGCT.........
ET0017362      --> GGCCTTTATTATAATATTTTTCAACTATTCGGTGC..........