Rose Transcriptome Database

               1      -     51
RU06320        --> AAGGAAAGCAGAAATTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- AAGAAAAGCAGAAATTGATGACAATAACA-TTTAAGTAGATTCAAA-GGA
CT0096687      <-- ...aaagtCAGAAATTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0038415      <-- .....agtCAGAAATTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0009390      <-- ...........tttTTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0064271      <-- ................GATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0092260      <-- ................GATGACAATAACA-TTTAAGTAGATTCAAA-GGA
CT0122915      <-- ................GATGACAATAACA-TTTAAGTAGATTCAAA-GGA
CT0049849      <-- ...............gtATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0078322      <-- ...............gtATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0091538      <-- .................ATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0009864      <-- .....................CAATAACA-TTTAAGTAGATTCAAA-GGA
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ...GAAAGCAGAAATTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0120072      --> ....AAAGCAGAAATTGATGACAATAACA-TTGAAGTAGATTCAAA-GGA
CT0017980      --> ................GATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0135285      --> ................GATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0136126      --> ................GATGACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0137336      --> ................GATGACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0137825      --> ................GATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0140276      --> ................GATGACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0138529      --> ...............gtATGACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0139866      --> ...............gtATGACAATAACA-TTGAAGTAGATTCAAA-GGA
ET0134168      --> .............agaataGACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0136612      --> .............gtattgtACAATAACA-TTTAAGTAGATTCAAA-GGA
ET0134465      --> .............agatagacaAATAACAATTTAAGTAGATTCAAAAGGA
CT0117687      --> ...........................CA-TTTAAGTAGATTCAAA-GGA
CT0066704      --> ..........gtattgtactaattaactatTTGAAGTAGATTCAAA-GGA
ET0011424      --> .............................tttttttTAGATTCAAA-GGA
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               51     -    101
RU06320        --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0096687      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0038415      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0009390      <-- AA-GTGCTTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0064271      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAAAGCTCCCCCTTC
CT0092260      <-- AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0122915      <-- AA-GTGCGTAAA-GAAACATCAAGGGG-TACAC.................
CT0049849      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0078322      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0091538      <-- AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0009864      <-- AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0036632      <-- ......cgTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0016371      <-- ..............AAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0120072      --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0017980      --> AA-GTGCTTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0135285      --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0136126      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0137336      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0137825      --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0140276      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0138529      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0139866      --> AA-GTGCTTAAA-GAAACATTAAGGGGGTACACAAAAA-GCTCCCCCTTC
ET0134168      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0136612      --> AA-GTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0134465      --> AAAGTGCGTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0117687      --> AA-GTGCGTAAAAGAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
CT0066704      --> AA-GTGCTTAAA-GAAACATTAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0011424      --> AA-GTGCTTAAA-GAAACATCAAGGGG-TACACAAAAA-GCTCCCCCTTC
ET0094669      --> .....................................A-GCTCCCCCTTC
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               101    -    151
RU06320        --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- TCCACCTGGACTGTATCTACAATTCAAT......................
CT0096687      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0038415      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0009390      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0064271      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0092260      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0122915      <-- ..................................................
CT0049849      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0078322      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0091538      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0009864      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0036632      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0016371      <-- TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCCCTCTACT
CT0120072      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0017980      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0135285      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0136126      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0137336      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0137825      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0140276      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0138529      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0139866      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0134168      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0136612      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0134465      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0117687      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
CT0066704      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0011424      --> TCCACCTGGACTGTAT..................................
ET0094669      --> TCCACCTGGACTGTATCTACAATTCAATGGCTCCCTCAATCCC-TCTACT
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               151    -    201
RU06320        --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0038415      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0009390      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCC.........
CT0064271      <-- AGACCAAATTTGAGACACCAGG............................
CT0092260      <-- AGACCAAATT-GAGACACCAGGAAAAAAAAA...................
CT0122915      <-- ..................................................
CT0049849      <-- AGACCAAATT-GAGACACCAGG............................
CT0078322      <-- AGACCAAATT-GAGACACCAGG............................
CT0091538      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0009864      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCC.........
CT0036632      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0016371      <-- AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0120072      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0017980      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0135285      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0136126      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0137336      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0137825      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0140276      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0138529      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0139866      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0134168      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0136612      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0134465      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0117687      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
CT0066704      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0011424      --> ..................................................
ET0094669      --> AGACCAAATT-GAGACACCAGGAAAAGAAAATTTAACCTCCATACACAAG
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               201    -    251
RU06320        --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATGCTTTTCAAAAG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0038415      <-- CATAA.............................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- CATAATTAGCagctgatttcttt...........................
CT0009864      <-- ..................................................
CT0036632      <-- CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0016371      <-- CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
CT0120072      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
CT0017980      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCGAAAG-
ET0135285      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0136126      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0137336      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0137825      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0140276      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0138529      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0139866      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0134168      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0136612      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0134465      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
CT0117687      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
CT0066704      --> CATAATTAGCTA......................................
ET0011424      --> ..................................................
ET0094669      --> CATAATTAGCTAGCTACCACAAATACTACCCCGTTATTCTTTTCAAAAG-
ET0116953      --> ..................gtggtagctagctaaTTATGCTTTTCAAAAG-
ET0117725      --> ..................gtggtagctagctaaTTATGCTTTTCAAAAG-
CT0035259      --> ....................................ttCTTTTCAAAAG-
CT0055702      --> ....................................ttCTTTTCAAAAGG
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               251    -    301
RU06320        --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- TACAGACT-C........................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0016371      <-- TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
CT0027559      <-- .........................CCCGACCTAAAAGGCTTGAAACCAC
CT0030647      <-- .........................CCCGACCTAAAAGGCTTGAAACCAC
CT0098305      <-- ...............................................aAC
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAA..............
CT0120072      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAA.............
CT0017980      --> TACAGACTTCTTCTTCCATT-G............................
ET0135285      --> TACAGACC-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0136126      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACC..
ET0137336      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0137825      --> TACAGACC-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0140276      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0138529      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0139866      --> TACAGACC-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0134168      --> TACAGACT-CTTCTTCCATT-GTTT.........................
ET0136612      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0134465      --> TACAGACT-CTTCTTCCATT-GTTTCCC......................
CT0117687      --> TACAGACT-CTTCTTCCATT-GTTTCCCGA....................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> TACAGACT-CT.......................................
ET0116953      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0117725      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
CT0035259      --> TACAGACT-CTTCTTCCATT-GTTTCCCGACCTAAAAGGCTTGAAACCAC
CT0055702      --> TACAGACTACTTCTTCCATTTGTTTCCCGACCTAAAAGGCTTGAAACCAC
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               301    -    351
RU06320        --> ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG...........
ET0016371      <-- ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCC...
CT0027559      <-- ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0030647      <-- ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0098305      <-- ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0056878      <-- ..............CTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0022492      <-- ...........................CAATTATGGGGG-TTGCTCCTGA
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> AT................................................
ET0136126      --> ..................................................
ET0137336      --> A.................................................
ET0137825      --> AT................................................
ET0140276      --> A.................................................
ET0138529      --> A.................................................
ET0139866      --> AT................................................
ET0134168      --> ..................................................
ET0136612      --> A.................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
ET0117725      --> ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0035259      --> ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGG-TTGCTCCTGA
CT0055702      --> ATCTTTCATAGTGACTCTGAAAATGTTCAATTATGGGGGGTTGCTCCTGA
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               351    -    401
RU06320        --> ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
CT0030647      <-- ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
CT0098305      <-- ATGACCCTAGCGCCTTAACAGCTCCTGCTATCAAGATGAACTGGTGGTAG
CT0056878      <-- ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
CT0022492      <-- ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
ET0050959      <-- taGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
ET0084984      <-- ........................CTGCTCTCAAGATGAACTGGTGGTAG
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
ET0117725      --> ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
CT0035259      --> ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
CT0055702      --> ATGACCCTAGCGCCTTAACAGCTCCTGCTCTCAAGATGAACTGGTGGTAG
ET0115571      --> ...................AGCTCCTGCTCTCAAGATGAACTGGTGGTAG
ET0056993      --> ........................CTGCTCTCAAGATGAACTGGTGGTAG
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               401    -    451
RU06320        --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCC..................
CT0030647      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCC..................
CT0098305      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0056878      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0022492      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
ET0050959      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
ET0084984      <-- AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
ET0117725      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0035259      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0055702      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAAACCCAGAAGATCCACT
ET0115571      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
ET0056993      --> AAAGCTGCAATTGCTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0121619      --> .............CTGCACCAATAAAGGGTCCAA-CCCAGAAGATCCACT
CT0045252      --> ...........................................ATCCACT
ET0111821      --> .............................................CCACT
CT0073527      --> ...............................................ACT
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               451    -    501
RU06320        --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................  Control
CT0096687      <-- ..................................................  Control
ET0038415      <-- ..................................................  Ethylene
ET0009390      <-- ..................................................  Ethylene
CT0064271      <-- ..................................................  Control
CT0092260      <-- ..................................................  Control
CT0122915      <-- ..................................................  Control
CT0049849      <-- ..................................................  Control
CT0078322      <-- ..................................................  Control
CT0091538      <-- ..................................................  Control
CT0009864      <-- ..................................................  Control
CT0036632      <-- ..................................................  Control
ET0016371      <-- ..................................................  Ethylene
CT0027559      <-- ..................................................  Control
CT0030647      <-- ..................................................  Control
CT0098305      <-- GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACGGCAGCTCCAAGACTT  Control
CT0056878      <-- GGTCATCCCAAGCCTTC.................................  Control
CT0022492      <-- GGTCATCCCAAGCCTT..................................  Control
ET0050959      <-- GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT  Ethylene
ET0084984      <-- GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT  Ethylene
ET0052350      <-- ..................................................  Ethylene
CT0044382      <-- ..................................................  Control
CT0056072      <-- ..................................................  Control
CT0080341      <-- ..................................................  Control
CT0035737      <-- ..................................................  Control
CT0050307      <-- ..................................................  Control
CT0046729      --> ..................................................  Control
CT0120072      --> ..................................................  Control
CT0017980      --> ..................................................  Control
ET0135285      --> ..................................................  Ethylene
ET0136126      --> ..................................................  Ethylene
ET0137336      --> ..................................................  Ethylene
ET0137825      --> ..................................................  Ethylene
ET0140276      --> ..................................................  Ethylene
ET0138529      --> ..................................................  Ethylene
ET0139866      --> ..................................................  Ethylene
ET0134168      --> ..................................................  Ethylene
ET0136612      --> ..................................................  Ethylene
ET0134465      --> ..................................................  Ethylene
CT0117687      --> ..................................................  Control
CT0066704      --> ..................................................  Control
ET0011424      --> ..................................................  Ethylene
ET0094669      --> ..................................................  Ethylene
ET0116953      --> GGTCATCac.........................................  Ethylene
ET0117725      --> GGTCATCacac.......................................  Ethylene
CT0035259      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACGGCAG...........  Control
CT0055702      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACgg..............  Control
ET0115571      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT  Ethylene
ET0056993      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT  Ethylene
CT0121619      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACGGCAGCTCCAAGACTT  Control
CT0045252      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACGGCAGCTCCAAGACTT  Control
ET0111821      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACAGCAGCTCCAAGACTT  Ethylene
CT0073527      --> GGTCATCCCAAGCCTTCTTGTCGTCTAAGATAACGGCAGCTCCAAGACTT  Control
CT0050177      --> ..................................................  Control
ET0066417      --> ..................................................  Ethylene
ET0094424      --> ..................................................  Ethylene
ET0099158      --> ..................................................  Ethylene
ET0102548      --> ..................................................  Ethylene
CT0031552      --> ..................................................  Control
CT0064032      --> ..................................................  Control
ET0082949      --> ..................................................  Ethylene
ET0093750      --> ..................................................  Ethylene
ET0096162      --> ..................................................  Ethylene
CT0054791      --> ..................................................  Control
CT0061883      --> ..................................................  Control

               501    -    551
RU06320        --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- CTAGCGGGGTTGATGCCAGTGCCGGTtgatttagggtaa...........
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
ET0084984      <-- CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
ET0056993      --> CTAGCGGGGTTGATGCCAGTGCCGG.........................
CT0121619      --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
CT0045252      --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
ET0111821      --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
CT0073527      --> CTAGCGGGGTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
CT0050177      --> ........GTTGATGCCAGTGCCGGTGATTGGGATGGTGGCCAAGTGAAC
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               551    -    601
RU06320        --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAAACCGGAACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCA..............
ET0084984      <-- CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAA-CCGGAACATG
ET0052350      <-- .............................agtggtgcAAACCGGAACATG
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAA-CCGGAACATG
ET0056993      --> ..................................................
CT0121619      --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAAACCGGAACATG
CT0045252      --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAA-CCGGAACATG
ET0111821      --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAA-CCGGAACATG
CT0073527      --> CATGAACACAGCAAAACCCAATTGGAAGTGGTGCCAAAAACCGGAACATG
CT0050177      --> CATGAACACAGCAAA-CCCAATTGGAAGTGGTGCCAAAA-CCGGAACATG
ET0066417      --> .....................TTGGAAGTGGTGCCAAAA-CCGGAACATG
ET0094424      --> ......................TGGAAGTGGTGCCAAAA-CCGGAACATG
ET0099158      --> ......................TGGAAGTGGTGCCAAAA-CCGGAACATG
ET0102548      --> ......................TGGAAGTGGTGCCAAAA-CCGGAACATG
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               601    -    651
RU06320        --> GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- GG-AATCTC---TAGCACT...............................
ET0052350      <-- GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0044382      <-- ...............CACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0056072      <-- .........................................AAAACAGTG
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> GG-AATCT..........................................
ET0056993      --> ..................................................
CT0121619      --> GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0045252      --> GG-AATCTC---TAG...................................
ET0111821      --> GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0073527      --> GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0050177      --> GG-AATCTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
ET0066417      --> GGGAATCTCCCCTAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
ET0094424      --> GGGAATCTCCCCTAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
ET0099158      --> GG-AATCTC-CCTAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
ET0102548      --> GGGAATCTC-CCTAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0031552      --> ......CTC---TAGCACTCCTCTTTGGGTCAGTGGCAGAGAAAACAGTG
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               651    -    701
RU06320        --> TAAACCAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
CT0044382      <-- TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
CT0056072      <-- TAAACCAGCA-CAAAGGTTCCAATAA-TCTCAGCAGACAATCCAACTCCA
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> TAAACCAGCAACAAAGGTCCCAA...........................
CT0045252      --> ..................................................
ET0111821      --> TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAAT.........
CT0073527      --> TAAACCAGCA-CAAAGGTCCCAATAA-TCTCAG.................
CT0050177      --> TAAACCAGCA-CAAAGGTTCCAATAA-TCTCAGCAGACAATCCAACTCCA
ET0066417      --> TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
ET0094424      --> TAAACTAGCA-CAAAGGTCCCAATAAGTCTCAGCAGACAATCCAACTCCA
ET0099158      --> TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
ET0102548      --> TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
CT0031552      --> TAAACTAGCA-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
CT0064032      --> .........A-CAAAGGTCCCAATAA-TCTCAGCAGACAATCCAACTCCA
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               701    -    751
RU06320        --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- GTGCTGTACCCATCAGCAAGCGTATTGGCTC...................
CT0044382      <-- GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
CT0056072      <-- GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
ET0066417      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
ET0094424      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTTTAT
ET0099158      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-A-
ET0102548      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTTTAT
CT0031552      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
CT0064032      --> GTGCTGTACCCATCAGCAAGCGTATTGGCTCCACCGCCAAACTTTTT-AT
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               751    -    801
RU06320        --> AGTAAGAACTCTGGAAAGCCTCGACTAGCCCAACTCCGGCTATGGCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
CT0056072      <-- AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCT.........
CT0080341      <-- ..TAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> AGTAAGAA..........................................
ET0066417      --> AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
ET0094424      --> AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
ET0099158      --> AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
ET0102548      --> AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGGCTATGGCACCC
CT0031552      --> AGTAAGAACTCTGGAAAGCCTt............................
CT0064032      --> AGTAAGAACTCTGGAAAGCCTTGACTAGCCCAACTCCGG...........
ET0082949      --> .................GCCTTGACTAGCCCAACTCCGGCTATGGCACCC
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               801    -    851
RU06320        --> AAACTCTGA-GCCACTATGTACATCACAGCTCAAAAAAAAAACACCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- AAACTCTGA-GCCACTATGTACATCACAGCTCggaccagcgacacctt..
CT0056072      <-- ..................................................
CT0080341      <-- AAACTCTGA-GCCACTATGTACATCACAGCTCGGACCAGCGACACCTTCC
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> AAACTCTGA-GCCACTATGTAC............................
ET0094424      --> AAACTCTGACGCCACTATGTACATa.........................
ET0099158      --> AAACTCTGA-GCCACTATGTACAT..........................
ET0102548      --> AAACTCTGA-GCCACTATGTACA...........................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> AAACTCTGA-GCCACTATGTACATCACAGCTCGGACCAGCGACACCTTCC
ET0093750      --> ...CTCTGA-GCCACTATGTACATCACAGCTCGGACCAGCGACACCTTCC
ET0096162      --> ...CTCTGA-GCCACTATGTACATCACAGCTCGGACCAGCGACACCTTCC
CT0054791      --> ....................................cagcgACACCTTCC
CT0061883      --> ..................................................

               851    -    901
RU06320        --> GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
ET0093750      --> GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
ET0096162      --> GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
CT0054791      --> GGGCCAAGAACAGCCCAAAAGTCACAGCCGGGTTAATGTGACCCCCTGAG
CT0061883      --> ................................................AG

               901    -    951
RU06320        --> ATTCCAGCAGTGCAGTAAACGAGCATGAAGATCATGCCTCCAAAGGCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ATTCCAGCAGTGCA....................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ATTCCAGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAGGCCCA
ET0093750      --> ATTCCAGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAGGCCCA
ET0096162      --> ATTCCAGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAGGCCCA
CT0054791      --> ATTCCAGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAGGCCCA
CT0061883      --> ATTCCAGCAGTGCAGTAAACGAGGATGAAGATCATGCCTCCAAAGGCCCA

               951    -   1001
RU06320        --> GGCAATACCCAAAATCCC-AACTCCACCGCAGTCGTCGGTCTCGCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ..................................................
CT0050307      <-- ..................................................
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> GGCAATACCCAAAATCCCCAACTCCGCCGCAGTCGTCGGTCTCGCTTTGG
ET0093750      --> GGCAATACCCAAAATCCC-AACTCCGCCGCAGTCGTCGGTCTCGCT....
ET0096162      --> GGCAATACCCAAAATCCC-AACTCCGCCGCAGTCGTCGGTCTCGCT....
CT0054791      --> GGCAATACCCAAAATCCC-AACTCCGCCGCAGTCGTCGGTCTCGCTTTGG
CT0061883      --> GGCAATACCCAAAATCCC-AACTCCGCCGCAGTCGTCGGTCTCGCTTTGG

               1001   -   1051
RU06320        --> GACTTGTACCCGATCACAGTCAGCACAGTGATGTACAGAAACAGAAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- ......TACCCGATCACAGTCAGCACAGTGATGTACAGAAACAGAAGGGT
CT0050307      <-- ......TACCCGATCACAGTCAGCACAGTGATGTAGAGAAACAGAAGGGT
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> GACTTGTACCCGATC...................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> GACTTGTACCCGATCA..................................
CT0061883      --> GACTTGTACCCGATCACAGTCAGCACAGTGATGTAGAGAAACAGAAGGGT

               1051   -   1101
RU06320        --> TGCTATGAACTCAGCTATAACAGCTCTGTAGAACGACCATTTGGTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- TGCTATGAACTCAGCTATAACAGCTCTGTAGAACGACCATTTGGTCAGCT
CT0050307      <-- TGCTATGAACTCAGCTATAACAGCTCTGTAGAACGACCATTTGGTCAGCT
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> TGCTATGAACTCAGCTATAACAGCTCTGTAGAACGACCATTTGGTCAGCT

               1101   -   1151
RU06320        --> CAACCGAGTCGAAGAGCGGAGCTGGAGGCGGGTCATGGTAGTCCTTGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- CAACCGAGTCGAACAGCGGAGCTGGAGGCGGGTCATGGTAGTCCTTGGCT
CT0050307      <-- CAACCGAGTCGAAGAGCGGAGCTGGAGGCGGGTCATGGTAGTCCTTGGCT
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> CAACCGAGTCGAAGAGCGGAG.............................

               1151   -   1201
RU06320        --> GAGAAGGAACCCCGCTCGGCAACTTCAACGTCCTTCGCCATTAA----AG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ..................................................
CT0096687      <-- ..................................................
ET0038415      <-- ..................................................
ET0009390      <-- ..................................................
CT0064271      <-- ..................................................
CT0092260      <-- ..................................................
CT0122915      <-- ..................................................
CT0049849      <-- ..................................................
CT0078322      <-- ..................................................
CT0091538      <-- ..................................................
CT0009864      <-- ..................................................
CT0036632      <-- ..................................................
ET0016371      <-- ..................................................
CT0027559      <-- ..................................................
CT0030647      <-- ..................................................
CT0098305      <-- ..................................................
CT0056878      <-- ..................................................
CT0022492      <-- ..................................................
ET0050959      <-- ..................................................
ET0084984      <-- ..................................................
ET0052350      <-- ..................................................
CT0044382      <-- ..................................................
CT0056072      <-- ..................................................
CT0080341      <-- ..................................................
CT0035737      <-- GAGAAGGAACCCCGCTCGGCAACTTCAACGTCCTTCGCCATTAA----AG
CT0050307      <-- GAGAAGGAACCCCGCTCGGCAACTTCAACGTCCTTCGCCATTAATTAAAG
CT0046729      --> ..................................................
CT0120072      --> ..................................................
CT0017980      --> ..................................................
ET0135285      --> ..................................................
ET0136126      --> ..................................................
ET0137336      --> ..................................................
ET0137825      --> ..................................................
ET0140276      --> ..................................................
ET0138529      --> ..................................................
ET0139866      --> ..................................................
ET0134168      --> ..................................................
ET0136612      --> ..................................................
ET0134465      --> ..................................................
CT0117687      --> ..................................................
CT0066704      --> ..................................................
ET0011424      --> ..................................................
ET0094669      --> ..................................................
ET0116953      --> ..................................................
ET0117725      --> ..................................................
CT0035259      --> ..................................................
CT0055702      --> ..................................................
ET0115571      --> ..................................................
ET0056993      --> ..................................................
CT0121619      --> ..................................................
CT0045252      --> ..................................................
ET0111821      --> ..................................................
CT0073527      --> ..................................................
CT0050177      --> ..................................................
ET0066417      --> ..................................................
ET0094424      --> ..................................................
ET0099158      --> ..................................................
ET0102548      --> ..................................................
CT0031552      --> ..................................................
CT0064032      --> ..................................................
ET0082949      --> ..................................................
ET0093750      --> ..................................................
ET0096162      --> ..................................................
CT0054791      --> ..................................................
CT0061883      --> ..................................................

               1201   -   1251
RU06320        --> CTTAGACAAAAACACACAGTTTTGGAATGTTAGAGAAGAAGAGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0087794      <-- ................................................
CT0096687      <-- ................................................
ET0038415      <-- ................................................
ET0009390      <-- ................................................
CT0064271      <-- ................................................
CT0092260      <-- ................................................
CT0122915      <-- ................................................
CT0049849      <-- ................................................
CT0078322      <-- ................................................
CT0091538      <-- ................................................
CT0009864      <-- ................................................
CT0036632      <-- ................................................
ET0016371      <-- ................................................
CT0027559      <-- ................................................
CT0030647      <-- ................................................
CT0098305      <-- ................................................
CT0056878      <-- ................................................
CT0022492      <-- ................................................
ET0050959      <-- ................................................
ET0084984      <-- ................................................
ET0052350      <-- ................................................
CT0044382      <-- ................................................
CT0056072      <-- ................................................
CT0080341      <-- ................................................
CT0035737      <-- CTTAGACAAAAACTCACAGTTTTGGAATGTTAGAGAAGAAGAGAGAGa
CT0050307      <-- CTTAGAC-AAAACACACAGTTTTGGTATGTTAGAGAAGAAGAGAGAGC
CT0046729      --> ................................................
CT0120072      --> ................................................
CT0017980      --> ................................................
ET0135285      --> ................................................
ET0136126      --> ................................................
ET0137336      --> ................................................
ET0137825      --> ................................................
ET0140276      --> ................................................
ET0138529      --> ................................................
ET0139866      --> ................................................
ET0134168      --> ................................................
ET0136612      --> ................................................
ET0134465      --> ................................................
CT0117687      --> ................................................
CT0066704      --> ................................................
ET0011424      --> ................................................
ET0094669      --> ................................................
ET0116953      --> ................................................
ET0117725      --> ................................................
CT0035259      --> ................................................
CT0055702      --> ................................................
ET0115571      --> ................................................
ET0056993      --> ................................................
CT0121619      --> ................................................
CT0045252      --> ................................................
ET0111821      --> ................................................
CT0073527      --> ................................................
CT0050177      --> ................................................
ET0066417      --> ................................................
ET0094424      --> ................................................
ET0099158      --> ................................................
ET0102548      --> ................................................
CT0031552      --> ................................................
CT0064032      --> ................................................
ET0082949      --> ................................................
ET0093750      --> ................................................
ET0096162      --> ................................................
CT0054791      --> ................................................
CT0061883      --> ................................................