SNPs of unigene RU06385
               1      -     51
RU06385        --> TTTTTTTTTAGCAAAGAAGATTCTTGATGTCATTTCTGTTGTTTGTT-AC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ....aaaggAGCAAAGAAGATTCTCGATGTCATTTCTGTTGTTTGTT-AC
CT0066787      <-- ..................................ctTGTTGTTTGTTTAC
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> TTTTTTTTTAGCAAAGAAGATTCTTGATGTCATTTCTGTTGTTTGTT-AC
CT0011878      --> ............................................GTT-AC
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               51     -    101
RU06385        --> AAATCACAAATTTCTCTTTATACCACATCCAATGGCTGAGATCTACATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- AAATCACAAATTTCTCTTTATACCACGTCCAATGGCTGAGATCTACATCC
CT0066787      <-- AAATCACAAATTTCTCTTTATACCACATCCAATGGCTGAGATCTACATCC
ET0002115      <-- ..........ttaCTCTTTATACCACATCCAATGGCTGAGATCTACATCC
CT0066555      <-- ................................................CC
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> AAATCACAAATTTCTCTTTATACCACATCCAATGGCTGAGATCTACATCC
CT0011878      --> AAATCACAAATTTCTCTTTATACCACATCCAATGGCTGAGATCTACATCC
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               101    -    151
RU06385        --> TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- TTT-CCAGTAGTCCCCACCACAatcacag.....................
CT0066787      <-- TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
ET0002115      <-- TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
CT0066555      <-- TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
CT0011878      --> TTTTCCAGTAGTCCCCACCACACATTATTACAACCCCCCATCCCAGATCT
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               151    -    201
RU06385        --> ACACCTTGTGTCCC-TTCCTATATAAAAATAAAATAAAAATAACACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ACACCTTGTGTCCC-TTCCTATATAAAAATAAAATAAAAATAACACTTTC
ET0002115      <-- ACACCTTGTGTCCC-TTCCTATATAAAAATAAAATAAAAATAACACTTTC
CT0066555      <-- ACACCTTGTGTCCC-TTCCTATATAAAAATAAAATAAAAATAACACTTTC
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ACACCTTGTGTCCCCTTCCTATATAAAAATAAAATAAAAATAACACTTTC
CT0011878      --> ACACCTTGTGTCCC-TTCCTATATAAAAATAAAATAAAAATAACACTTTC
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               201    -    251
RU06385        --> TTGAAGATCCTTTCTGCTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- TTGAAGATCCTTTCTGCTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
ET0002115      <-- TTGAAGATCCTTTCTGCTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
CT0066555      <-- TTGAAGATCCTTTCTGCTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> TTGAAGATCCTTTCTGCTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
CT0011878      --> TTGAAGATCCTTTCTGCTTCTTACA.........................
CT0027869      --> ............tttttTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
CT0050465      --> ............tttttTTCTTACACTTATCTTCTTCTTCTTCTTCTATA
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               251    -    301
RU06385        --> AAATTTATATCTATATGATATGATACATCAAGAACAGCTATGATTCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- AAATTTATATCTATATGATATGATACATCAAGAACAGCTATG........
ET0002115      <-- AAATTTATATCTATATGATATGATACATCAAGAACAGCTATGATTCAATA
CT0066555      <-- AAATTTATATCTATATGATATGATACATCAAGAACAGCTATGATTCAATA
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> A.................................................
CT0011878      --> ..................................................
CT0027869      --> AAATTTATATCTATATGATATGATACATCAAGAACAGCTATGATTCAATA
CT0050465      --> AAATTTATATCTATATGATATGATACATCAAGAACAGCTATGATTCAATA
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               301    -    351
RU06385        --> CACCAAGGACCACATAACAATAACTTAGGATTTTTCCCCAGAAAAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- CACCAAGttccaac....................................
CT0066555      <-- CACCAAGGACCACATAACAATAACTTAGGATTTTTCCCCAGAAAAAAAGA
CT0107771      <-- ......gaACCACATAACAATAACTTAGGATTTTTCCCAAGAAAAAAAGA
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> CACCAAGGACCACATAACAATAACTTAGGATTTTTCCCCAGAAAAAAAGA
CT0050465      --> CACCAAGGACCACATAACAATAACTTAGGATTTTTCCCCAGAAAAAAAGA
CT0066133      --> ...............AACAATAACTTAGGATTTTTCCCCAGAAAAAAAGA
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               351    -    401
RU06385        --> AAA--G-AAAAAA-CAGGATTGGATTTTTTTTTT-AAATTT-CAGCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- AAA-AG-AAAAAAACAGGATTGGATTTTTTTTTT-AAATT..........
CT0107771      <-- AAAAAGAAAAAAA-CAGGATTGGATTTTTTTTTT-AAATTT-CAGCAAAA
ET0076281      <-- ................................................AA
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> AAA--G-AAAAAA-CAGGATTGGATTTTTTTT..................
CT0050465      --> AAA--G-AAAAAA-CAGGATTGGATTTTTTTTT.................
CT0066133      --> AAA--G-AAAAAA-CAGGATTGGATTTTTTTTTTTAAATTTTCAGCAAAA
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               401    -    451
RU06385        --> AGAAAAAA-TTTAAGGGAGGAAGAATTAAAA-GGGGGGGCC-ATGTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- AGAAAAAAATTTAAGGGAGGAAGAATTAAAAAGAGGGGGCC-ATGTAATC
ET0076281      <-- AGAAAAAA-TT-AA-GGAGG-AGATTAAAAA-GGGGGGACCGATGTGATC
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> AGAAAAAA-TTTAAGGGAGGAAGAATTAAAA-GAGGGGGCC-ATGTAATC
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               451    -    501
RU06385        --> AGTGATGATTGATGATCCAATCAAGCGGATTCCTCGGGCTGCTGACTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- AGTGATGATTGATGATCCAATCAAGCGGATTCCTCGGGCTGCTGACTCAT
ET0076281      <-- AGTGATGATTGATGATCCAATCAAGCGGATTCCTCGGGCTGCTGACTCAT
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> AGTGATGATTGATGATCCAATCAAGCGGATc...................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               501    -    551
RU06385        --> CATCTTCTTATAATTATTGTCGCTTTCCTTTTTTACCCTCGACTCGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- CATCTTCTTATAATTATTGTCGCTTTCCTTTTTTACCCTCGACTCGATCC
ET0076281      <-- CATCTTCTTATAATTATTGTCGCTTTCCTTTTTTACCCTCGACTCGATCC
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               551    -    601
RU06385        --> CGTAATAACTCACGTACCACTTTACGAACTTCCTCAGCCCGGAGGCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- CGTAATAACTCACGTACCACTTTACGAACTTCCTCAGCCCGGAGGCCAGG
ET0076281      <-- CGTAATAACTCACGTACCACTTTACGAACTTCCTCAGCCCGGAGGCCAGG
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..............................cctTCAGCCCGGAGGCCAGG
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               601    -    651
RU06385        --> TCCGTCGTCGGCTTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- TCCGTCGTCG........................................
ET0076281      <-- TCCGTCGTCGGCTTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
CT0048587      <-- ........CGGCTTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
CT0065308      <-- ........CGGCTTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
ET0005893      <-- ............TTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> TCCGTCGTCGGCTTGTACCCGAAGTCGTGCAGCGCCAAGCTCACATTCGC
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               651    -    701
RU06385        --> ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ATGCGTGT..........................................
CT0048587      <-- ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0065308      <-- ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
ET0005893      <-- ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0075187      <-- .........CGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0085071      <-- .........................................ACGTGTTTC
CT0027803      <-- ...............................................TTC
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
ET0048299      --> ATGCGTGTACGGCACGTCACCGTTT-CTCGGCATCTTGATCACGTGTTTC
ET0131128      --> ..........aacgtacaACCGTTTACTCGGCATCTTGATCACGTGTTTC
CT0107157      --> ........gaaaatattgaagGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0107853      --> .........gaaatattgaagGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0107869      --> .........gaaatattgaagGTTT-CTCGGCATCTTGATCACGTGTTTC
CT0108308      --> .........gaaatattgaagGTTT-CTCGGCATCTTGATCACGTGTTTC
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               701    -    751
RU06385        --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0065308      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0005893      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0075187      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0085071      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0027803      <-- TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0063101      <-- ...........................................TGCCGAC
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0048299      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0131128      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0107157      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0107853      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0107869      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
CT0108308      --> TTCGCTTTGGTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0110072      --> .........GTACTCAACAGCCCTTCCAGTATCGACACCAGTCTGCCGAC
ET0012128      --> .......................TTCCAGTATCGACACCAGTCTGCCGAC
ET0023537      --> .......................TTCCAGTATCGACACCAGTCTGCCGAC
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               751    -    801
RU06385        --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- GGGGACCGGCGACGTGTT................................
CT0065308      <-- GGGGACCGGCGACGTGTT................................
ET0005893      <-- ..................................................
CT0075187      <-- GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0085071      <-- GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0027803      <-- GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0063101      <-- GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0011052      <-- .....CCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0013016      <-- ......CGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0048299      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0131128      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0107157      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0107853      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0107869      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0108308      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0110072      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0012128      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
ET0023537      --> GGGGACCGGCGACGTGTTCCCCAGGTTGTAGATTCTCAGCTGGGCCGGGC
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               801    -    851
RU06385        --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCC-GGCGGTG-C-GAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0085071      <-- CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0027803      <-- CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
ET0063101      <-- CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0011052      <-- CTT-CTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0013016      <-- CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0032950      <-- ...........CCG-CCGCTGCCGGTGCTCTTCCCTGCGGTGTC-GAGGG
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> CTTTCTTTTTTCCGTCCGCTGCCGGTGC......................
ET0048299      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
ET0131128      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0107157      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCC-GGCGGTG-C-GAGGG
CT0107853      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTG-CCGAGGG
CT0107869      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTG-CCGAGGG
CT0108308      --> CTTTCTTTTT-CCG-CCGCTGCCGGTGCTCTTCCCGGCGGTG-CCGAGGG
ET0110072      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
ET0012128      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
ET0023537      --> CTTTCTTTTTTCCG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
CT0084672      --> ............CG-CCGCTGCCGGTGCTCTTCCCGGCGGTGTC-GAGGG
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               851    -    901
RU06385        --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0085071      <-- C.................................................
CT0027803      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0063101      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0011052      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0013016      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0032950      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0132934      <-- CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0131128      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGC...
CT0107157      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0107853      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0107869      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0108308      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0110072      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0012128      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0023537      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
CT0084672      --> CGCCGAGGCAGCCCTTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0080967      --> ..............TTGACTATGTCGTCAATGTAGGTGAAGTCACGCGCC
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               901    -    951
RU06385        --> ACCTCTTTGTCGTCGACGGTTTTGTATACGTCGATGGTCTTGCCTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ACCTCTTTGTCGTCGACGGTTTTGTAc.......................
CT0085071      <-- ..................................................
CT0027803      <-- ACCTCTTTGTCGTCGACGGTTTTGTACACGTCGATGGTCTTGCCT.....
ET0063101      <-- ACCTCTTTGTCGTCGACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
CT0011052      <-- ACCT..............................................
CT0013016      <-- ACCT..............................................
CT0032950      <-- ACCTCTTTGTCGTCGACGGTTTTGTATACGTCGATGGTCTTGCCTTGGAG
CT0132934      <-- ACCTCTTTGTCGTCGACGGTTTTGTATACGTCGATGGTCTTGCCTTGGAG
ET0000630      <-- ............TCGACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
CT0022983      <-- ................................................AG
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> AC................................................
ET0131128      --> ..................................................
CT0107157      --> ACCTCTTTGTCGTCGACGGTTTTGTA........................
CT0107853      --> ACCTCTTTGTCGTCGACGGTTTTGTA........................
CT0107869      --> ACCTCTTTGTCGTCGACGGTTTTGTA........................
CT0108308      --> ACCTCTTTGTCGTCGACGGTTTgt..........................
ET0110072      --> ACCTCTTTGTCGTCGACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
ET0012128      --> ACCTCTTTGTCGTCGACGGTTT............................
ET0023537      --> ACCTCTTTGTCGTCGACGGTTT............................
CT0084672      --> ACCTCTTTGTCGTCGACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
ET0080967      --> ACCTCTTTGTCGTCGACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
ET0000789      --> ...............ACGGTTTTGTACACGTCGATGGTCTTGCCTTGGAG
CT0054620      --> .............................................tctgt
CT0075799      --> ...............................................tct
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               951    -   1001
RU06385        --> TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCG...............
CT0132934      <-- TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
ET0000630      <-- TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0022983      <-- TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
ET0014444      <-- ....TCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> TATGTCCTTGGTGAA-GAAGAAGTAGG.......................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
ET0080967      --> TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
ET0000789      --> TATGTCCTTGGTGAA-GAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0054620      --> tgggaaCTTGGTGAAAGAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0075799      --> gtggaaCTTGGTGAAAGAAGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
CT0013104      --> ..................AGAAGTAGGCCATGTCGGGTCTGCCCCAGGGC
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1001   -   1051
RU06385        --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- CCGTAGACGGTGAAa...................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
ET0000630      <-- CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0022983      <-- CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
ET0014444      <-- CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
ET0080967      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
ET0000789      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0054620      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0075799      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0013104      --> CCGTAGACGGTGAAGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
ET0029898      --> .............AGAATCTCAGCCCGGTGAGGGAGAGGCCGTAAATATG
CT0121535      --> .........................................GTAAATATG
ET0141118      --> ................................................TG
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1051   -   1101
RU06385        --> GTTGTAAGTGTGGGCGATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- GTTGTAAGTGTGGGCGATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
ET0000630      <-- GTTGTAA...........................................
CT0022983      <-- GTTGTAAGTGTGGGCGATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
ET0014444      <-- GTTGTAAGTGTGGGC...................................
CT0045822      <-- ...............................................AGA
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> GTTGTAAGTGTGGGC...................................
ET0080967      --> GTTGTAAGTGTGGG....................................
ET0000789      --> GTTGTAAGTGTGGGCAATTTCTTCGCCGG.....................
CT0054620      --> GTTGTAAGTGTGGGCGATTTCTTCGCCG......................
CT0075799      --> GTTGTAAGTGTGGGCGATTTCTTCG.........................
CT0013104      --> GTTGTAAGTGTGGGCAATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
ET0029898      --> GTTGTAAGTGTGGGCGATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
CT0121535      --> GTTGTAAGTGTGGGCAATTTCTTCGCCGGCTTTTTTAGTGGCGGCGTAGA
ET0141118      --> GTTGTAAGTGTGGGCAATTTCTTCGCCGGCTTTTTTAG-GGCGGCGTAGA
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1101   -   1151
RU06385        --> GACTGGCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCTCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- GACTGGCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCTCGGTG
ET0000630      <-- ..................................................
CT0022983      <-- GACTGGCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCT.....
ET0014444      <-- ..................................................
CT0045822      <-- GACGTGCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCTCGGTG
CT0056616      <-- .....GCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCTCGGTG
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> GA................................................
ET0029898      --> GACTGGCGGGCTGGTCTGTTCTGTGGAGCTCGGAAAATGGGTTCTCGGTG
CT0121535      --> ..................................................
ET0141118      --> G.................................................
ET0029892      --> ...........................caaatattgaaggtTTCTCGGTG
ET0037547      --> ...........................caaatattgaaggtTTCTCGGTG
ET0040062      --> ...........................caaatattgaaggtTTCTCGGTG
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1151   -   1201
RU06385        --> TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACGATCGACGGCTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGAC...............
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACAATCGACGGCTGAGG
CT0056616      <-- TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACAATCGACGGCTGAGG
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACAATCGACGGCTGAGG
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACGATCGACGGCTGAGG
ET0037547      --> TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACGATCGACGGCTGAGG
ET0040062      --> TTGAGGCCGTAGACGGAGCTGGAGGAGGCCCAGACGATCGACGGCTGAGG
ET0048600      --> ..............GGAGCTGGAGGAGGCCCAGACAATCGACGGCTGAGG
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1201   -   1251
RU06385        --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
CT0056616      <-- ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
ET0037547      --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
ET0040062      --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
ET0048600      --> ATTAGCAGCTTTGGAAATTTCGAGGAGATTGACGAACCCGGCAATGTTGG
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1251   -   1301
RU06385        --> ACGCCACGTAGGACTGGGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ACGCCACGTAGGACTGAGGGTTCTGCATGGCGTAGCGTACACCC-GCCTa
CT0056616      <-- ACGCCACGTAGGACTGAGGGTTCTGCATGGCGTAGCGTACACCCCGCCTG
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ACGCCACGTAGGACTGAGGGTT............................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ACGCCACGTAGGACTGGGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
ET0037547      --> ACGCCACGTAGGACTGGGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
ET0040062      --> ACGCCACGTAGGACTGGGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
ET0048600      --> ACGCCACGTAGGACTGAGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
CT0068527      --> ACGCCACGTAGGACTGAGGGTTCTGCATGGCGTAGCGTACACCC-GCCTG
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1301   -   1351
RU06385        --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- gacgac............................................
CT0056616      <-- CGC...............................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
ET0037547      --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
ET0040062      --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
ET0048600      --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
CT0068527      --> CGCCGCCAAGTGGAGCACGTGGGTGAACGGAACGACGTCGAAGAGCTTCG
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1351   -   1401
RU06385        --> TCAGCATCGGGCCGTCGTTCAGGTCGGCCTCGACGATGAAAATCTCGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> TCAGCATCGGGCCGTCGTTCAGGTCG........................
ET0037547      --> TCAGCATCGGGCCGTCGTTCAGGTCG........................
ET0040062      --> TCAGCATCGGGCCGTCGTTCAGGTCG........................
ET0048600      --> TCAGCATCGGGCCGTCGTTCAGGTCGGCCTCGACGATGAAAATCTCGTGC
CT0068527      --> TCAGCATCGGGCCGTCGTTCAGGTCGGCCTCGACGATGAAAATCTCGTGC
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1401   -   1451
RU06385        --> TTCTTCAGCATGGCCTGCCTGGCCCGCTTCAGCGACGGGTCGTAGTAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ................................CGACGGGTCGTAGTAGGA
CT0129699      <-- .................................GACGGGTCGTAGTAGGA
CT0131447      <-- .................................GACGGGTCGTAGTAGGA
CT0140011      <-- ..................................ACGGGTCGTAGTAGGA
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> TT................................................
CT0068527      --> TTCTTCAGCATCGCCTGCCTGGCCCGCTTCAGCGACGGGTCGTAGTAGGA
CT0106640      --> ..............................................AGGA
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1451   -   1501
RU06385        --> GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
CT0129699      <-- GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
CT0131447      <-- GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
CT0140011      <-- GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
ET0056476      <-- .......TTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> GTTGAA............................................
CT0106640      --> GTTGAAGTTGTCGAGCCCCAGGACGCCGTCGCCGCGCTTCTTGAGCGCGA
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1501   -   1551
RU06385        --> GGGAGCAGTGGGACCCGATGAACCCGGCGGCGCCGGTGACGAGCACCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- GGGAGCAGTGGGACCCGATGAACCCGGCGGCGCCGGTGACGA........
CT0129699      <-- GGGAGCAGTGGGACCCGAT...............................
CT0131447      <-- GGGAGCAGTGGGACCCGAT...............................
CT0140011      <-- GGGAGCAGTGGGACCCGATGAACCCGGCGGCGCC................
ET0056476      <-- GGGAGCAGTGGGACCCGATGAACCCGGCGGCGCCGGTGACGAGCACCGAC
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> GGGAGCAGTGGGACCCGATGAACCCGGCGGCGCCGGTGACGAGCACCGAC
ET0089807      --> ...............gaATGAACCCGGCGGCGCCGGTGACGAGCACCGAC
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1551   -   1601
RU06385        --> ATGCCGTTGGGGCGCTTGGGGGTGGAGGAGTGGCGGACCTGCTTCTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ATGCCGTTGGGGCGCTTGGGGGTGGAGGAGTGGCGGACCTGCTTCTCCCA
CT0108719      <-- ..................................................
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ATGCCGTTGGGGCGCTTGGGGGTGGAGGAGTGGCGGACCTGCTTCTCCCA
ET0089807      --> ATGCCGTTGAGGCGCTTGGGGGTGGAGGAGTGGCGGACCTGCTTCTCCCA
ET0032789      --> .......................GGAGGAGTGGCGGACCTGCTTCTCCCA
ET0041343      --> .......................GGAGGAGTGGCGGACCTGCTTCTCCCA
ET0002233      --> ........................GAGGAGTGGCGGACCTGCTTCTCCCA
ET0096295      --> .............................................TCCCA
CT0062827      --> ..................................................
CT0002705      --> ..................................................
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1601   -   1651
RU06385        --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................  Ethylene
CT0066787      <-- ..................................................  Control
ET0002115      <-- ..................................................  Ethylene
CT0066555      <-- ..................................................  Control
CT0107771      <-- ..................................................  Control
ET0076281      <-- ..................................................  Ethylene
CT0048587      <-- ..................................................  Control
CT0065308      <-- ..................................................  Control
ET0005893      <-- ..................................................  Ethylene
CT0075187      <-- ..................................................  Control
CT0085071      <-- ..................................................  Control
CT0027803      <-- ..................................................  Control
ET0063101      <-- ..................................................  Ethylene
CT0011052      <-- ..................................................  Control
CT0013016      <-- ..................................................  Control
CT0032950      <-- ..................................................  Control
CT0132934      <-- ..................................................  Control
ET0000630      <-- ..................................................  Ethylene
CT0022983      <-- ..................................................  Control
ET0014444      <-- ..................................................  Ethylene
CT0045822      <-- ..................................................  Control
CT0056616      <-- ..................................................  Control
CT0072648      <-- ..................................................  Control
CT0129699      <-- ..................................................  Control
CT0131447      <-- ..................................................  Control
CT0140011      <-- ..................................................  Control
ET0056476      <-- GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGG..................  Ethylene
CT0108719      <-- ...............ctCCCCGC-GTAGAAGGCGGAGGAGAGGAAGTTGG  Control
ET0037715      <-- ..................................................  Ethylene
ET0001736      <-- ..................................................  Ethylene
ET0075651      <-- ..................................................  Ethylene
CT0028059      <-- ..................................................  Control
ET0063700      --> ..................................................  Ethylene
CT0011878      --> ..................................................  Control
CT0027869      --> ..................................................  Control
CT0050465      --> ..................................................  Control
CT0066133      --> ..................................................  Control
ET0020018      --> ..................................................  Ethylene
ET0048299      --> ..................................................  Ethylene
ET0131128      --> ..................................................  Ethylene
CT0107157      --> ..................................................  Control
CT0107853      --> ..................................................  Control
CT0107869      --> ..................................................  Control
CT0108308      --> ..................................................  Control
ET0110072      --> ..................................................  Ethylene
ET0012128      --> ..................................................  Ethylene
ET0023537      --> ..................................................  Ethylene
CT0084672      --> ..................................................  Control
ET0080967      --> ..................................................  Ethylene
ET0000789      --> ..................................................  Ethylene
CT0054620      --> ..................................................  Control
CT0075799      --> ..................................................  Control
CT0013104      --> ..................................................  Control
ET0029898      --> ..................................................  Ethylene
CT0121535      --> ..................................................  Control
ET0141118      --> ..................................................  Ethylene
ET0029892      --> ..................................................  Ethylene
ET0037547      --> ..................................................  Ethylene
ET0040062      --> ..................................................  Ethylene
ET0048600      --> ..................................................  Ethylene
CT0068527      --> ..................................................  Control
CT0106640      --> GGCGGTGCCGCCGACTCCCCCGC-GTAGAAGGCGGAGGAGAGGAAGTTGG  Control
ET0089807      --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG  Ethylene
ET0032789      --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG  Ethylene
ET0041343      --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG  Ethylene
ET0002233      --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG  Ethylene
ET0096295      --> GGCGGTGCCGCCGACTCCCCCGCCGTAGAAGGCGGAGGAGAGGAAGTTGG  Ethylene
CT0062827      --> ..................................................  Control
CT0002705      --> ..................................................  Control
CT0014375      --> ..................................................  Control
CT0063107      --> ..................................................  Control
CT0072336      --> ..................................................  Control
CT0019066      --> ..................................................  Control
CT0031928      --> ..................................................  Control
CT0053021      --> ..................................................  Control
CT0056437      --> ..................................................  Control

               1651   -   1701
RU06385        --> TTTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- TTTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
ET0037715      <-- ..................................................
ET0001736      <-- ..................................................
ET0075651      <-- ..................................................
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> TTTTGTGGAGGTGGTGGGCCCCGTTC-GGTCGGAAGAGAGGGGAGGGTAG
ET0089807      --> TGTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
ET0032789      --> TGTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
ET0041343      --> TGTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
ET0002233      --> TTTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
ET0096295      --> TTTTGTGGAGGTGGTGGGCCCCGTTCCGGTCGGAAGAGAGGGGAGGGTAG
CT0062827      --> ...........................................AGGGTAG
CT0002705      --> .................................................G
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1701   -   1751
RU06385        --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0037715      <-- ....................GAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0001736      <-- ..............................GCGACGAGGAGGGTGGCGCG
ET0075651      <-- ...................................GAGGAGGGTGGCGCG
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> TTGAGGGTGAAGAAGAAG................................
ET0089807      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0032789      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0041343      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0002233      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
ET0096295      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
CT0062827      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
CT0002705      --> TTGAGGGTGAAGAAGAAGATGAGGACGAGGGCGACGAGGAGGGTGGCGCG
CT0014375      --> ..................................................
CT0063107      --> ..................................................
CT0072336      --> ..................................................
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1751   -   1801
RU06385        --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- GAAGAGGAGCTTGGAGGAGGCGTTGAG.......................
ET0037715      <-- GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
ET0001736      <-- GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
ET0075651      <-- GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
CT0028059      <-- ..................................................
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTG.............
ET0032789      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
ET0041343      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
ET0002233      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
ET0096295      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
CT0062827      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
CT0002705      --> GAAGAGGAGCTTGGAGGAGGCGTTGAGCAGCTTGGTGCTGTTCACGCGGC
CT0014375      --> .....................GTTGAGCAGCTTGGTGCTGTTCACGCGGC
CT0063107      --> ................................TGGTGCTGTTCACGCGGC
CT0072336      --> ................................TGGTGCTGTTCACGCGGC
CT0019066      --> ..................................................
CT0031928      --> ..................................................
CT0053021      --> ..................................................
CT0056437      --> ..................................................

               1801   -   1851
RU06385        --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
ET0001736      <-- GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
ET0075651      <-- GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0028059      <-- .......................AGCTTTATGGTCTTGCTAGTGTCCGGT
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> GGAGGTAGCTGTTGTACCGCT.............................
ET0041343      --> GGAGGTAGCTGTTGTACCGCT.............................
ET0002233      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTG............
ET0096295      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0062827      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0002705      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0014375      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0063107      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0072336      --> GGAGGTAGCTGTTGTACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0019066      --> ...............ACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0031928      --> ...............ACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0053021      --> ...............ACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT
CT0056437      --> ...............ACCGCTCCAGCTTTATGGTCTTGCTAGTGTCCGGT

               1851   -   1901
RU06385        --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- GGAGAGGCCATTATTACCATAACGACACAGATCACACAATTGTT-GTGTC
ET0001736      <-- GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
ET0075651      <-- GGAGAGGCCATTATTACCATAACGACACAGATCACACAATTGTT-GTGTC
CT0028059      <-- GGAGAAGCCATTATTACCATAACGACACAGATCACAGAATTGTTTGTGTC
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> GGAGAAGCCATTA.....................................
CT0062827      --> GGAGAAGCCATT......................................
CT0002705      --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
CT0014375      --> GGAGAAGCCATTATTACCATAACGACACAGATCACAGAATTGTTTGTGTC
CT0063107      --> GGAGAAGCCATTATTACCATAACGACACAGATCACAGAATTGTTTGTGTC
CT0072336      --> GGAGAAGCCATTATTACCATAACGACACAGATCACAGAATTGTTTGTGTC
CT0019066      --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
CT0031928      --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
CT0053021      --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC
CT0056437      --> GGAGAAGCCATTATTACCATAACGACACAGATCACACAATTGTTTGTGTC

               1901   -   1951
RU06385        --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGGAAAAAAAGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0114028      <-- ..................................................
CT0066787      <-- ..................................................
ET0002115      <-- ..................................................
CT0066555      <-- ..................................................
CT0107771      <-- ..................................................
ET0076281      <-- ..................................................
CT0048587      <-- ..................................................
CT0065308      <-- ..................................................
ET0005893      <-- ..................................................
CT0075187      <-- ..................................................
CT0085071      <-- ..................................................
CT0027803      <-- ..................................................
ET0063101      <-- ..................................................
CT0011052      <-- ..................................................
CT0013016      <-- ..................................................
CT0032950      <-- ..................................................
CT0132934      <-- ..................................................
ET0000630      <-- ..................................................
CT0022983      <-- ..................................................
ET0014444      <-- ..................................................
CT0045822      <-- ..................................................
CT0056616      <-- ..................................................
CT0072648      <-- ..................................................
CT0129699      <-- ..................................................
CT0131447      <-- ..................................................
CT0140011      <-- ..................................................
ET0056476      <-- ..................................................
CT0108719      <-- ..................................................
ET0037715      <-- AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GG.............
ET0001736      <-- AACCAACTATTAGTGTTGCAG.............................
ET0075651      <-- AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GG.............
CT0028059      <-- AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGGAAAAAAAGCACA
ET0063700      --> ..................................................
CT0011878      --> ..................................................
CT0027869      --> ..................................................
CT0050465      --> ..................................................
CT0066133      --> ..................................................
ET0020018      --> ..................................................
ET0048299      --> ..................................................
ET0131128      --> ..................................................
CT0107157      --> ..................................................
CT0107853      --> ..................................................
CT0107869      --> ..................................................
CT0108308      --> ..................................................
ET0110072      --> ..................................................
ET0012128      --> ..................................................
ET0023537      --> ..................................................
CT0084672      --> ..................................................
ET0080967      --> ..................................................
ET0000789      --> ..................................................
CT0054620      --> ..................................................
CT0075799      --> ..................................................
CT0013104      --> ..................................................
ET0029898      --> ..................................................
CT0121535      --> ..................................................
ET0141118      --> ..................................................
ET0029892      --> ..................................................
ET0037547      --> ..................................................
ET0040062      --> ..................................................
ET0048600      --> ..................................................
CT0068527      --> ..................................................
CT0106640      --> ..................................................
ET0089807      --> ..................................................
ET0032789      --> ..................................................
ET0041343      --> ..................................................
ET0002233      --> ..................................................
ET0096295      --> ..................................................
CT0062827      --> ..................................................
CT0002705      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGAAAAAA.......
CT0014375      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGGAAAAAAAGCACA
CT0063107      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGGAAAAAAAGcac.
CT0072336      --> AACCAACTATTAGTGTTGCAGAGCTCTAAGAAATAGGGAAAAAAAGcaac
CT0019066      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGAAAAAAAAGGACA
CT0031928      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGAAAAAAAAGGACA
CT0053021      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGAAAAAAAAGGACA
CT0056437      --> AACCAACTATTAGTGTTGCAGAGCTCTA-GAAAT-GGAAAAAAAAGGACA

               1951   -   2001
RU06385        --> AAAGGGCAG
                   ~~~~~~~~~
ET0114028      <-- .........
CT0066787      <-- .........
ET0002115      <-- .........
CT0066555      <-- .........
CT0107771      <-- .........
ET0076281      <-- .........
CT0048587      <-- .........
CT0065308      <-- .........
ET0005893      <-- .........
CT0075187      <-- .........
CT0085071      <-- .........
CT0027803      <-- .........
ET0063101      <-- .........
CT0011052      <-- .........
CT0013016      <-- .........
CT0032950      <-- .........
CT0132934      <-- .........
ET0000630      <-- .........
CT0022983      <-- .........
ET0014444      <-- .........
CT0045822      <-- .........
CT0056616      <-- .........
CT0072648      <-- .........
CT0129699      <-- .........
CT0131447      <-- .........
CT0140011      <-- .........
ET0056476      <-- .........
CT0108719      <-- .........
ET0037715      <-- .........
ET0001736      <-- .........
ET0075651      <-- .........
CT0028059      <-- AAAGGGCAG
ET0063700      --> .........
CT0011878      --> .........
CT0027869      --> .........
CT0050465      --> .........
CT0066133      --> .........
ET0020018      --> .........
ET0048299      --> .........
ET0131128      --> .........
CT0107157      --> .........
CT0107853      --> .........
CT0107869      --> .........
CT0108308      --> .........
ET0110072      --> .........
ET0012128      --> .........
ET0023537      --> .........
CT0084672      --> .........
ET0080967      --> .........
ET0000789      --> .........
CT0054620      --> .........
CT0075799      --> .........
CT0013104      --> .........
ET0029898      --> .........
CT0121535      --> .........
ET0141118      --> .........
ET0029892      --> .........
ET0037547      --> .........
ET0040062      --> .........
ET0048600      --> .........
CT0068527      --> .........
CT0106640      --> .........
ET0089807      --> .........
ET0032789      --> .........
ET0041343      --> .........
ET0002233      --> .........
ET0096295      --> .........
CT0062827      --> .........
CT0002705      --> .........
CT0014375      --> AAAGGGCAG
CT0063107      --> .........
CT0072336      --> .........
CT0019066      --> AAAGGGaag
CT0031928      --> AAAGGGaag
CT0053021      --> AAAGGGaag
CT0056437      --> AAAGGGaag