SNPs of unigene RU06688
               1      -     51
RU06688        --> CGTTTTTTTCTTTT-AACCTTTTACCTTTACGTTTCCCGGTTTCTAGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> CGTTTTTTTCTTTTTAACCTTTTACCTTTACGTTTCCCGGTTTCTAGGTA
ET0038893      --> ..cgTTTTTCTTTT-AACCTTTTACCTTTACGTTTCCCGGTTTCTAGGTA
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               51     -    101
RU06688        --> ATTTTAACCCGATTCCCTTTCGAAGTTCGCGCGAGACGCGCTATCAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ATTTTAACCCGATTCCCTTTCGAAGTTCGCGCGAGACGCGCTATCAGACG
ET0038893      --> ATTTTAACCCGATTCCCTTTCGAAGTTCGCGCGAGACGCGCTATCAGACG
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               101    -    151
RU06688        --> GGGTTACCCAGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> GGGTTACCCAGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCA
ET0038893      --> GGGTTACCCAGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCA
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               151    -    201
RU06688        --> CATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> CATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTG
ET0038893      --> CATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTG
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               201    -    251
RU06688        --> CTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..............................GCTCCGCCCGGGCTCACGCC
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> CTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCC
ET0038893      --> CTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCC
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               251    -    301
RU06688        --> CC-AGGTTTTGCAGCGACCGCCGCGCCCTCCTGCTCATCGGGGCCTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- CC-AGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCA
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> CC-AGGTTTTGCAGCGACCGCCGCGCCCTC....................
ET0038893      --> CCCAGGTTTTGCAGCGACCGCCGCGCCCTCCT..................
ET0144107      --> ............ctacctagttacctCCTCCTGCTCATCGGGGCCTGGCA
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               301    -    351
RU06688        --> CTTGCCCCGACGGCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- CTTGCCCCGACGGCCGGGTATAGGTCACGCCCTTAAGCGCCATCCATTTT
ET0115162      <-- ............................GCGCTTAAGCGCCATCCATTTT
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> CTTGCCCCGACGGCCGGGTATAGGTCACGCGCTTAAGCGCCATCCATTTT
ET0146728      --> ......................GGTCACGCGCTTAAGCGCCATCCATTTT
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               351    -    401
RU06688        --> CGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- CGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0115162      <-- CGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0054585      <-- ................gtCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> CGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0146728      --> CGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0124166      --> ........GTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
ET0061155      --> .....................GTGAGTTGTTACACACTCCTTAGCGGATT
ET0064921      --> .................................ACACTCCTTAGCGGATT
CT0114074      --> ......................................CCTTAGCGGATT
ET0095119      --> .............................................GGATT
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               401    -    451
RU06688        --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0115162      <-- T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0054585      <-- T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAAACACCCTT
ET0123120      <-- .......................................CAA-CACCCTT
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0146728      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0124166      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0061155      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0064921      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
CT0114074      --> TTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0095119      --> T-CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0147850      --> ...GACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAA-CACCCTT
ET0126371      --> ................................................TT
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               451    -    501
RU06688        --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0115162      <-- TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0054585      <-- TGTGGGTTCTAGGTTAGCGCGTAGTTGGGGCACCGTAACCC-GGCTTCCG
ET0123120      <-- TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0106938      <-- .......TCTAGGTTAGCGCGTAGTTGGGGCACCGTAACCC-GGCTTCCG
ET0125356      <-- ..............TAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
CT0125432      <-- ...................CGTAGTTGGG-CACCGTAACCCCGGCTTCCG
ET0122831      <-- ..........................GGG-CACCGTAACCC-GGCTTCCG
CT0074925      <-- ............................G-CACCGTAACCC-GGCTTCCG
CT0138438      <-- ........................................C-GGCTTCCG
CT0127267      <-- ...............................................CCG
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0146728      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0124166      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0061155      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0064921      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
CT0114074      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0095119      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0147850      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
ET0126371      --> TGTGGGTTCTAGGTTAGCGCGTAGTTGGG-CACCGTAACCC-GGCTTCCG
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               501    -    551
RU06688        --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAAAT-GGCCCACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- GTTCATCCC-GC......................................
ET0115162      <-- GTTCATCCCCGCATCGCCAGTTCTGCTTACCAAAAAAT-GGCCCACTTGG
ET0054585      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0123120      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0106938      <-- GTTCATCCC-GCATCGCCAGTTCTGCTT-CCAAAAA-T-GGCCCACTTGG
ET0125356      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0125432      <-- GTTCATCCC-GCATCGCCAGTTCTGCTT-CCAAAAA-T-GGCC-ACTTGG
ET0122831      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0074925      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0138438      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0127267      <-- GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAAATAGGCCCACTTGG
ET0125100      <-- ..........................................CCACTTGG
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> GTTCATCCC-GCATCGCCAGTTCTGCTT-CCAAAAA-T-GGCCCACTTGG
ET0146728      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAAAT-GGCCCACTTGG
ET0124166      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0061155      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0064921      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0114074      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0095119      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
ET0147850      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAAAT-GGCCCACTTGG
ET0126371      --> GTTCATCCC-GCATCGCCAGTTCTGCTTACCAAAAA-T-GGCCCACTTGG
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               551    -    601
RU06688        --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCG......
ET0054585      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0123120      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0106938      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0125356      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0125432      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0122831      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0074925      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0138438      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0127267      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAAAGCAGCCACGCCGTCCTAC
ET0125100      <-- AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0069039      <-- ..........TCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0018415      <-- ..........TCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0078598      <-- ..........TCCATGGCGTGGCTCA-CAAA-GCAGCCACGCCGTCCTAC
ET0019193      <-- ...........CCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0024470      <-- ............CATGGCGTGGCTCA-CAAA-GCAGCCACGCCGTCCTAC
ET0133463      <-- ..........................ACAAA-GCAGCCACGCCGTCCTAC
ET0034936      <-- ...........................CAAA-GCAGCCACGCCGTCCTAC
ET0111711      <-- ............................AAA-GCAGCCACGCCGTCCTAC
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> AGCTCTCGATTCCATGGCGTGGCTCA-CAAA-GCAGCCACGCCGTCCTAC
ET0146728      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0124166      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0061155      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0064921      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0114074      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0095119      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
ET0147850      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAAAGCAGCCACGCCGTCCTAC
ET0126371      --> AGCTCTCGATTCCATGGCGTGGCTCAACAAA-GCAGCCACGCCGTCCTAC
CT0037583      --> ..........................................CGTCCTAC
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               601    -    651
RU06688        --> CTATTTAAA-G-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- CTATTTAAA-G-TTTGAGAATAGGTCGAGGGCGTTGCGCCCC........
ET0123120      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0106938      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0125356      <-- CTATTTAAAAG-TTTGAGAATAGGTTGAGGGCGTTGCGCCCCC-GATGCC
CT0125432      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0122831      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0074925      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0138438      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0127267      <-- CTATTTAAA-G.......................................
ET0125100      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0069039      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTG-GCCCCC-GATGCC
ET0018415      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0078598      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTG-GCCCCC-GATGCC
ET0019193      <-- CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0024470      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTG-GCCCCC-GATGCC
ET0133463      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0034936      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTG-GCCCCC-GATGCC
ET0111711      <-- CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> CTttt.............................................
ET0146728      --> CTATTTAAAAGTTTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0124166      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGC..................
ET0061155      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-G.....
ET0064921      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0114074      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0095119      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0147850      --> CTATTTAAA-G-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCCCGATGCC
ET0126371      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
CT0037583      --> CTATTTAAAAG-TTTGAGAATAGGTCGAGGGCGTTGCGCCCCC-GATGCC
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               651    -    701
RU06688        --> TCTAATCATTGGCTTTTACCCCGATAGAACTCGTTTCACGGGCTCCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0106938      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0125356      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0125432      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0122831      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0074925      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0138438      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0127267      <-- ..................................................
ET0125100      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0069039      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0018415      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0078598      <-- TCTAATCATTGGCTTTTACCC-GATAGAACTCGTT-CACGGGCTCCAGCT
ET0019193      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0024470      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0133463      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0034936      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0111711      <-- TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0095869      <-- ..................................................
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> TCTAATCATTGGCTTTac................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> TCTAAT............................................
CT0114074      --> TCTAATCATTG.......................................
ET0095119      --> TCTAATCATTGGCTTTaccc..............................
ET0147850      --> TCTAATCATTGGCTTTTACCCCGATAGAACTCGTTTCACGGGCTCCAGCT
ET0126371      --> TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
CT0037583      --> TCTAATCATTGGCTTT-A-CCCGATAGAACTCGTT-CACGGGCTCCAGCT
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               701    -    751
RU06688        --> ATCCTGAGGG-AAACTTCGGGGGGAACCAGCTACTAGACGGTTCGATTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ATCCTGAGGG-AAACTTCGGagg...........................
ET0106938      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCAGCTA.................
ET0125356      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCAGCTACTAGAC...........
CT0125432      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCAGCTACTAGACGGTTCGA....
ET0122831      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAG
CT0074925      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAG
CT0138438      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
CT0127267      <-- ..................................................
ET0125100      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
CT0069039      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0018415      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0078598      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0019193      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0024470      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0133463      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0034936      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0111711      <-- ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0095869      <-- ........................AACCAGCTACTAGACGGTTCGATTAG
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ATCCTGAGGG-AAACTTCGGGGGGAACCAGCTACTAGACGGTTCGATTAG
ET0126371      --> ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
CT0037583      --> ATCCTGAGGG-AAACTTCGGAGGGAACCA.....................
ET0001767      --> .TCCTGAGGGGAAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAG
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               751    -    801
RU06688        --> TCTTTTCGTCCCCTATTACCCAAGTCAGACGAACGATTTGCACGTCAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- TC................................................
CT0074925      <-- TC................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- TCTTTTCGTCCCCTATTACCCAAGTCAGACGAACGATTTGCACGTCAGTA
ET0132941      <-- ..................................................
CT0046688      <-- ..................................................
CT0055485      <-- ..................................................
CT0064528      <-- ..................................................
CT0065752      <-- ..................................................
CT0072052      <-- ..................................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> TCTTT.............................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> TCTTT-CG-CCCCTACTACCCAAcg.........................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               801    -    851
RU06688        --> TCGCAGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- TCGCAGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCA
ET0132941      <-- .............CCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCA
CT0046688      <-- ................................................CA
CT0055485      <-- ................................................CA
CT0064528      <-- ................................................CA
CT0065752      <-- ................................................CA
CT0072052      <-- ................................................CA
ET0001344      <-- ................................................CA
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ..................................................
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               851    -    901
RU06688        --> TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
ET0132941      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
CT0046688      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
CT0055485      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
CT0064528      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
CT0065752      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
CT0072052      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTT
ET0001344      <-- TAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAgacgct
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> .............................cagatattgaaacccttacta
ET0015912      --> ..................................................
ET0020432      --> ..................................................

               901    -    951
RU06688        --> CTCAGAAGATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................  Control
ET0115162      <-- ..................................................  Ethylene
ET0054585      <-- ..................................................  Ethylene
ET0123120      <-- ..................................................  Ethylene
ET0106938      <-- ..................................................  Ethylene
ET0125356      <-- ..................................................  Ethylene
CT0125432      <-- ..................................................  Control
ET0122831      <-- ..................................................  Ethylene
CT0074925      <-- ..................................................  Control
CT0138438      <-- ..................................................  Control
CT0127267      <-- ..................................................  Control
ET0125100      <-- ..................................................  Ethylene
CT0069039      <-- ..................................................  Control
ET0018415      <-- ..................................................  Ethylene
ET0078598      <-- ..................................................  Ethylene
ET0019193      <-- ..................................................  Ethylene
ET0024470      <-- ..................................................  Ethylene
ET0133463      <-- ..................................................  Ethylene
ET0034936      <-- ..................................................  Ethylene
ET0111711      <-- ..................................................  Ethylene
ET0095869      <-- CTCAGAAGATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Ethylene
ET0132941      <-- CTCAGAAGATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Ethylene
CT0046688      <-- CTCA---GATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Control
CT0055485      <-- CTCA---GATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Control
CT0064528      <-- CTCA---GATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Control
CT0065752      <-- CTCA---GATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Control
CT0072052      <-- CTCA---GATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Control
ET0001344      <-- cgaca.............................................  Ethylene
ET0036831      --> ..................................................  Ethylene
ET0038893      --> ..................................................  Ethylene
ET0144107      --> ..................................................  Ethylene
ET0146728      --> ..................................................  Ethylene
ET0124166      --> ..................................................  Ethylene
ET0061155      --> ..................................................  Ethylene
ET0064921      --> ..................................................  Ethylene
CT0114074      --> ..................................................  Control
ET0095119      --> ..................................................  Ethylene
ET0147850      --> ..................................................  Ethylene
ET0126371      --> ..................................................  Ethylene
CT0037583      --> ..................................................  Control
ET0001767      --> ..................................................  Ethylene
ET0068885      --> caagaAAGATCAAGGTCGGTCGGCGGTGCACCCGTAAAGGGATCCCGCAC  Ethylene
ET0015912      --> .............................................ctgcg  Ethylene
ET0020432      --> .............................................ctgcg  Ethylene

               951    -   1001
RU06688        --> ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ATTAGCTTCCTTGCGCCTTAACGGGTTTAAatacaac.............
ET0132941      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
CT0046688      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
CT0055485      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
CT0064528      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
CT0065752      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
CT0072052      <-- ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ATTAGCTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
ET0015912      --> taccaaTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC
ET0020432      --> taccaaTTCCTTGCGCCTTA-CGGGTTTAATCACCCGTTGACTCGCACAC

               1001   -   1051
RU06688        --> ATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGCCGAAATAGGGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ..................................................
ET0115162      <-- ..................................................
ET0054585      <-- ..................................................
ET0123120      <-- ..................................................
ET0106938      <-- ..................................................
ET0125356      <-- ..................................................
CT0125432      <-- ..................................................
ET0122831      <-- ..................................................
CT0074925      <-- ..................................................
CT0138438      <-- ..................................................
CT0127267      <-- ..................................................
ET0125100      <-- ..................................................
CT0069039      <-- ..................................................
ET0018415      <-- ..................................................
ET0078598      <-- ..................................................
ET0019193      <-- ..................................................
ET0024470      <-- ..................................................
ET0133463      <-- ..................................................
ET0034936      <-- ..................................................
ET0111711      <-- ..................................................
ET0095869      <-- ..................................................
ET0132941      <-- ATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGCCGAAATAGGGGAAGA
CT0046688      <-- ATGTCAGACTCCTT....................................
CT0055485      <-- ATGTCAGACTCCTT....................................
CT0064528      <-- ATGTCAGACTCCTT....................................
CT0065752      <-- ATGTCAGACTCCTT....................................
CT0072052      <-- ATGTCAGACTCCTT....................................
ET0001344      <-- ..................................................
ET0036831      --> ..................................................
ET0038893      --> ..................................................
ET0144107      --> ..................................................
ET0146728      --> ..................................................
ET0124166      --> ..................................................
ET0061155      --> ..................................................
ET0064921      --> ..................................................
CT0114074      --> ..................................................
ET0095119      --> ..................................................
ET0147850      --> ..................................................
ET0126371      --> ..................................................
CT0037583      --> ..................................................
ET0001767      --> ..................................................
ET0068885      --> ATGTCAGACTCCT.....................................
ET0015912      --> ATG...............................................
ET0020432      --> ATG...............................................

               1051   -   1101
RU06688        --> CCCGACAAGGACCGTTAACCAAGGAAGACAACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0016518      <-- ...................................
ET0115162      <-- ...................................
ET0054585      <-- ...................................
ET0123120      <-- ...................................
ET0106938      <-- ...................................
ET0125356      <-- ...................................
CT0125432      <-- ...................................
ET0122831      <-- ...................................
CT0074925      <-- ...................................
CT0138438      <-- ...................................
CT0127267      <-- ...................................
ET0125100      <-- ...................................
CT0069039      <-- ...................................
ET0018415      <-- ...................................
ET0078598      <-- ...................................
ET0019193      <-- ...................................
ET0024470      <-- ...................................
ET0133463      <-- ...................................
ET0034936      <-- ...................................
ET0111711      <-- ...................................
ET0095869      <-- ...................................
ET0132941      <-- CCCGACAAGGACCGTTAACCAAGGAAGACAACGAC
CT0046688      <-- ...................................
CT0055485      <-- ...................................
CT0064528      <-- ...................................
CT0065752      <-- ...................................
CT0072052      <-- ...................................
ET0001344      <-- ...................................
ET0036831      --> ...................................
ET0038893      --> ...................................
ET0144107      --> ...................................
ET0146728      --> ...................................
ET0124166      --> ...................................
ET0061155      --> ...................................
ET0064921      --> ...................................
CT0114074      --> ...................................
ET0095119      --> ...................................
ET0147850      --> ...................................
ET0126371      --> ...................................
CT0037583      --> ...................................
ET0001767      --> ...................................
ET0068885      --> ...................................
ET0015912      --> ...................................
ET0020432      --> ...................................