SNPs of unigene RU06704
               1      -     51
RU06704        --> CCTAAAGCAAATTTTTTTTTTTTTGATT-AATAAGCAA-T--AAAA-CCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- CCTAAAGCAAATTAGGGAATTCTTGATT-AATAAGCAA-T--AAAA-CCT  Control
ET0040283      <-- ........................................taAAAA-CCT  Ethylene
ET0145279      <-- ..................................................  Ethylene
CT0132393      <-- ..................................................  Control
ET0078691      <-- ..................................................  Ethylene
CT0105164      <-- ..................................................  Control
ET0115119      <-- ..................................................  Ethylene
ET0075631      <-- ..................................................  Ethylene
ET0101298      <-- ..................................................  Ethylene
ET0103353      <-- ..................................................  Ethylene
ET0106598      <-- ..................................................  Ethylene
ET0035084      <-- ..................................................  Ethylene
ET0106364      <-- ..................................................  Ethylene
ET0105059      <-- ..................................................  Ethylene
ET0072258      <-- ..................................................  Ethylene
ET0075959      <-- ..................................................  Ethylene
CT0129613      <-- ..................................................  Control
ET0117078      <-- ..................................................  Ethylene
ET0108398      <-- ..................................................  Ethylene
CT0065333      --> .............TTTTTTTTCTTGATT-AATAAGCAA-T--AAAA-CCT  Control
CT0104081      --> ...............TTTTTTCTTGATT-AATAAGCAA-T--AAAA-CCT  Control
ET0080045      --> ...............TTTTTTTTTGATT-AATAAGCAAAT--AAAAACCT  Ethylene
ET0108738      --> ...............TTTTTTTTTGATTTAATAAGCAA-TTAAAAA-CCT  Ethylene
ET0079193      --> ........................GATT-AATAAGCAA-T--AAAAACCT  Ethylene
CT0041891      --> ......................ttttttttATAAGCAA-T--AAA--CCT  Control
ET0043539      --> ......................ttttttttATAAGCGA-T--AAA--CCG  Ethylene
ET0107240      --> .............agttaattttaaatttaaagtctaatT--AAAA-CCT  Ethylene
ET0010816      --> ..................................................  Ethylene
CT0114407      --> ..................................................  Control
CT0014270      --> ..................................................  Control
CT0027197      --> ..................................................  Control
CT0064055      --> ..................................................  Control
CT0077094      --> ..................................................  Control
ET0046389      --> ..................................................  Ethylene
ET0076476      --> ..................................................  Ethylene
ET0078151      --> ..................................................  Ethylene
ET0079350      --> ..................................................  Ethylene
ET0079962      --> ..................................................  Ethylene
ET0104495      --> ..................................................  Ethylene
ET0107928      --> ..................................................  Ethylene
ET0108979      --> ..................................................  Ethylene
ET0142300      --> ..................................................  Ethylene
ET0142807      --> ..................................................  Ethylene
CT0047468      --> ..................................................  Control
CT0019519      --> ..................................................  Control
ET0129223      --> ..................................................  Ethylene
ET0135569      --> ..................................................  Ethylene
CT0029985      --> ..................................................  Control
CT0024626      --> ..................................................  Control
ET0022405      --> ..................................................  Ethylene
CT0087176      --> ..................................................  Control
CT0096347      --> ..................................................  Control
ET0077314      --> ..................................................  Ethylene
ET0044540      --> ..................................................  Ethylene
ET0047279      --> ..................................................  Ethylene
ET0050096      --> ..................................................  Ethylene
ET0019322      --> ..................................................  Ethylene
ET0025871      --> ..................................................  Ethylene
ET0028660      --> ..................................................  Ethylene
CT0072610      --> ..................................................  Control

               51     -    101
RU06704        --> TTTTATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- TTT-ATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0040283      <-- TTTAATTTTA-TTTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0145279      <-- ...........................................TATTTTC
CT0132393      <-- ..................................................
ET0078691      <-- ..................................................
CT0105164      <-- ..................................................
ET0115119      <-- ..................................................
ET0075631      <-- ..................................................
ET0101298      <-- ..................................................
ET0103353      <-- ..................................................
ET0106598      <-- ..................................................
ET0035084      <-- ..................................................
ET0106364      <-- ..................................................
ET0105059      <-- ..................................................
ET0072258      <-- ..................................................
ET0075959      <-- ..................................................
CT0129613      <-- ..................................................
ET0117078      <-- ..................................................
ET0108398      <-- ..................................................
CT0065333      --> TTT-ATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0104081      --> TTT-ATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0080045      --> TTTTATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0108738      --> TTTTATTTTA--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0079193      --> TTTTATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0041891      --> TTT-ATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0043539      --> TTT-ATTT-AAGTTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0107240      --> TTT-ATTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0010816      --> TTTTTTTT-A--TTGATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0114407      --> ...............ATAGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0014270      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0027197      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0064055      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0077094      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0046389      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0076476      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0078151      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0079350      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0079962      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0104495      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0107928      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0108979      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0142300      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
ET0142807      --> .................AGAGAAGGAGAGCAGTACCACATTATTATTTTC
CT0047468      --> ..................................................
CT0019519      --> ..................................................
ET0129223      --> ..................................................
ET0135569      --> ..................................................
CT0029985      --> ..................................................
CT0024626      --> ..................................................
ET0022405      --> ..................................................
CT0087176      --> ..................................................
CT0096347      --> ..................................................
ET0077314      --> ..................................................
ET0044540      --> ..................................................
ET0047279      --> ..................................................
ET0050096      --> ..................................................
ET0019322      --> ..................................................
ET0025871      --> ..................................................
ET0028660      --> ..................................................
CT0072610      --> ..................................................

               101    -    151
RU06704        --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAG.........
ET0040283      <-- TTGAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0145279      <-- T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0132393      <-- ..................................................
ET0078691      <-- ..................................................
CT0105164      <-- ..................................................
ET0115119      <-- ..................................................
ET0075631      <-- ..................................................
ET0101298      <-- ..................................................
ET0103353      <-- ..................................................
ET0106598      <-- ..................................................
ET0035084      <-- ..................................................
ET0106364      <-- ..................................................
ET0105059      <-- ..................................................
ET0072258      <-- ..................................................
ET0075959      <-- ..................................................
CT0129613      <-- ..................................................
ET0117078      <-- ..................................................
ET0108398      <-- ..................................................
CT0065333      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0104081      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0080045      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0108738      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0079193      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0041891      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0043539      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0107240      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0010816      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0114407      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0014270      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0027197      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0064055      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0077094      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0046389      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0076476      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0078151      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0079350      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0079962      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0104495      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0107928      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0108979      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0142300      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
ET0142807      --> T-GAAGTAGCGCCAAGTAACATTTGGCTTTGCTGTTTACAGGCTGTCATA
CT0047468      --> ..................................................
CT0019519      --> ..................................................
ET0129223      --> ..................................................
ET0135569      --> ..................................................
CT0029985      --> ..................................................
CT0024626      --> ..................................................
ET0022405      --> ..................................................
CT0087176      --> ..................................................
CT0096347      --> ..................................................
ET0077314      --> ..................................................
ET0044540      --> ..................................................
ET0047279      --> ..................................................
ET0050096      --> ..................................................
ET0019322      --> ..................................................
ET0025871      --> ..................................................
ET0028660      --> ..................................................
CT0072610      --> ..................................................

               151    -    201
RU06704        --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0145279      <-- TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0132393      <-- ..............................AGACCTTAAA-CCC-AAAA-
ET0078691      <-- ....................................TAAA-CCC-AAAA-
CT0105164      <-- ..................................................
ET0115119      <-- ..................................................
ET0075631      <-- ..................................................
ET0101298      <-- ..................................................
ET0103353      <-- ..................................................
ET0106598      <-- ..................................................
ET0035084      <-- ..................................................
ET0106364      <-- ..................................................
ET0105059      <-- ..................................................
ET0072258      <-- ..................................................
ET0075959      <-- ..................................................
CT0129613      <-- ..................................................
ET0117078      <-- ..................................................
ET0108398      <-- ..................................................
CT0065333      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGAC................
CT0104081      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0080045      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0108738      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0079193      --> TATAATTATCAAGGATAAAACCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0041891      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0043539      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0107240      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0010816      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0114407      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCCCAAAA-
CT0014270      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0027197      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0064055      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0077094      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0046389      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0076476      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0078151      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0079350      --> TATAATTATCAAGGATAAAACCTCAATGAGAGACCTTAAAACCC-AAAAA
ET0079962      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0104495      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0107928      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0108979      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
ET0142300      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAAACCC-AAAA-
ET0142807      --> TATAATTATCAAGGATAAA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0047468      --> .................AA-CCTCAATGAGAGACCTTAAA-CCC-AAAA-
CT0019519      --> ...........................................C-AAAA-
ET0129223      --> ..................................................
ET0135569      --> ..................................................
CT0029985      --> ..................................................
CT0024626      --> ..................................................
ET0022405      --> ..................................................
CT0087176      --> ..................................................
CT0096347      --> ..................................................
ET0077314      --> ..................................................
ET0044540      --> ..................................................
ET0047279      --> ..................................................
ET0050096      --> ..................................................
ET0019322      --> ..................................................
ET0025871      --> ..................................................
ET0028660      --> ..................................................
CT0072610      --> ..................................................

               201    -    251
RU06704        --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGTTTAG
ET0145279      <-- T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0132393      <-- T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0078691      <-- T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0105164      <-- ......AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0115119      <-- ...........................................AGCTTAG
ET0075631      <-- ..................................................
ET0101298      <-- ..................................................
ET0103353      <-- ..................................................
ET0106598      <-- ..................................................
ET0035084      <-- ..................................................
ET0106364      <-- ..................................................
ET0105059      <-- ..................................................
ET0072258      <-- ..................................................
ET0075959      <-- ..................................................
CT0129613      <-- ..................................................
ET0117078      <-- ..................................................
ET0108398      <-- ..................................................
CT0065333      --> ..................................................
CT0104081      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0080045      --> T-GGG-A-TTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0108738      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0079193      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0041891      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0043539      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGTTTAG
ET0107240      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0010816      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGTTTAG
CT0114407      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0014270      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0027197      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0064055      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0077094      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0046389      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGTTTAG
ET0076476      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0078151      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0079350      --> TGGGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0079962      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0104495      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0107928      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0108979      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0142300      --> T-GGGGAGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTA.
ET0142807      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0047468      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
CT0019519      --> T-GGG-AGTTATCTTATAGTCACTGAAACCAGCATCAGTGAAGAGCTTAG
ET0129223      --> ...............................................TAG
ET0135569      --> ...............................................TAG
CT0029985      --> ................................................AG
CT0024626      --> ..................................................
ET0022405      --> ..................................................
CT0087176      --> ..................................................
CT0096347      --> ..................................................
ET0077314      --> ..................................................
ET0044540      --> ..................................................
ET0047279      --> ..................................................
ET0050096      --> ..................................................
ET0019322      --> ..................................................
ET0025871      --> ..................................................
ET0028660      --> ..................................................
CT0072610      --> ..................................................

               251    -    301
RU06704        --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0145279      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0132393      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0078691      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0105164      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0115119      <-- CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0075631      <-- .............cctA-TT--CC-TTT-CTTTTTCCTT-CCGA-CG-A-
ET0101298      <-- ..............ctA-TT--CC-TTT-CTTTT-CC-TTCCGA-CG-A-
ET0103353      <-- ..............ctA-TT--CC-TTT-CTTTTTCCTT-CCGACCG-A-
ET0106598      <-- ...............tA-TT--CC-TTT-CTTTTTCCTT-CCGA-CC-A-
ET0035084      <-- ...................T--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0106364      <-- ...................T--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0105059      <-- .........................TTT-CTTTT-CC-T-CCGA-CGGAC
ET0072258      <-- ....................................C-T-CCGA-CG-A-
ET0075959      <-- .......................................ccgtA-CG-A-
CT0129613      <-- ..................................................
ET0117078      <-- ..................................................
ET0108398      <-- ..................................................
CT0065333      --> ..................................................
CT0104081      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0080045      --> CCC-ATT-CTTTC-C-A-TTTCCC-TTTTCTTTT-CCctccg........
ET0108738      --> CCC-ATT-CTTTCTC-A-TTTCCC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0079193      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTTTCTTTT-CC-T-CCGA-CG-A-
CT0041891      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0043539      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0107240      --> CCC-ATTTCTTTCTC-A-TTTCCCTTTT-CTTTT-CC-T-CCGA-CG-A-
ET0010816      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0114407      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0014270      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTT-CTTT.................
CT0027197      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0064055      --> CCC-A.............................................
CT0077094      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0046389      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0076476      --> CCC-ATT-CTTTCTC-A-TT--CC-TTTTCTTTT-CC-T-CCGA-CG-A-
ET0078151      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC---CCGA-CG-A-
ET0079350      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-C-GA-CG-A-
ET0079962      --> CCC-ATTTCTTTCTC-A-TT-TCC-TTT-CTTTT-CC---CCGA-CG-A-
ET0104495      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0107928      --> CCC-ATT-CTTTCCA-T-TT--CC-TTTTCTTTT-CC-T-CCGA-CG-A-
ET0108979      --> CCCTATT-CTTTCTCTATTT--CC-TTT-CTTTT-CC----CGA-CG-A-
ET0142300      --> ..................................................
ET0142807      --> CCC-ATT-CTTTCTC-A-TT-TCC-TTT......................
CT0047468      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0019519      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0129223      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
ET0135569      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0029985      --> CCC-ATT-CTTTCTC-A-TT--CC-TTT-CTTTT-CC-T-CCGA-CG-A-
CT0024626      --> .........................TTT-CTTTT-CC-T-CCGA-CG-A-
ET0022405      --> .........................TTT-TTTTT-CC-T-CCGA-CG-A-
CT0087176      --> ...................................CC-T-CCGA-CG-A-
CT0096347      --> ...................................CC-T-CCGA-CG-A-
ET0077314      --> ...................................CC-T-CCGA-CG-A-
ET0044540      --> ..................................................
ET0047279      --> ..................................................
ET0050096      --> ..................................................
ET0019322      --> ..................................................
ET0025871      --> ..................................................
ET0028660      --> ..................................................
CT0072610      --> ..................................................

               301    -    351
RU06704        --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- GGG-CC-ATCATCAGCATagt.............................
ET0145279      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0132393      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0078691      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0105164      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0115119      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0075631      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0101298      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0103353      <-- GGG-CCGATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0106598      <-- GGGGCCGATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0035084      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0106364      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0105059      <-- GGG-CC-ATCATCAGCATGTACGAAGAACTAGTTGCGTTTCAATTGATTC
ET0072258      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0075959      <-- GGG-CCGATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0129613      <-- GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0117078      <-- ...................T-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0108398      <-- ..................................................
CT0065333      --> ..................................................
CT0104081      --> GG................................................
ET0080045      --> ..................................................
ET0108738      --> GGG...............................................
ET0079193      --> GG................................................
CT0041891      --> GGG-CC-ATCA.......................................
ET0043539      --> GGG-CC-ATCATC.....................................
ET0107240      --> GGG...............................................
ET0010816      --> GGG-CC-ATCATCAGCATGT-CGAAG........................
CT0114407      --> GGG-CC............................................
CT0014270      --> ..................................................
CT0027197      --> GGG-CC-ATCATCAG...................................
CT0064055      --> ..................................................
CT0077094      --> GGG-CC-ATCATCAG...................................
ET0046389      --> GGG-CC-ATCATC.....................................
ET0076476      --> GGG-C.............................................
ET0078151      --> GGG-CC-A..........................................
ET0079350      --> GGcc..............................................
ET0079962      --> GGc...............................................
ET0104495      --> GG................................................
ET0107928      --> GGc...............................................
ET0108979      --> GGca..............................................
ET0142300      --> ..................................................
ET0142807      --> ..................................................
CT0047468      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0019519      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0129223      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0135569      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0029985      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0024626      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0022405      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0087176      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
CT0096347      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0077314      --> GGG-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0044540      --> ..G-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0047279      --> ..G-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0050096      --> ..G-CC-ATCATCAGCATGT-CGAAGAAC-AGTTGCGTTTCAATTGATTC
ET0019322      --> ....................................GTTTCAATTGATTC
ET0025871      --> ....................................GTTTCAATTGATTC
ET0028660      --> ....................................GTTTCAATTGATTC
CT0072610      --> ..................................................

               351    -    401
RU06704        --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- ..................................................
ET0145279      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0132393      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0078691      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0105164      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0115119      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0075631      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0101298      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0103353      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0106598      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0035084      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0106364      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0105059      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0072258      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0075959      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0129613      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0117078      <-- CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0108398      <-- ..............TGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0065333      --> ..................................................
CT0104081      --> ..................................................
ET0080045      --> ..................................................
ET0108738      --> ..................................................
ET0079193      --> ..................................................
CT0041891      --> ..................................................
ET0043539      --> ..................................................
ET0107240      --> ..................................................
ET0010816      --> ..................................................
CT0114407      --> ..................................................
CT0014270      --> ..................................................
CT0027197      --> ..................................................
CT0064055      --> ..................................................
CT0077094      --> ..................................................
ET0046389      --> ..................................................
ET0076476      --> ..................................................
ET0078151      --> ..................................................
ET0079350      --> ..................................................
ET0079962      --> ..................................................
ET0104495      --> ..................................................
ET0107928      --> ..................................................
ET0108979      --> ..................................................
ET0142300      --> ..................................................
ET0142807      --> ..................................................
CT0047468      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0019519      --> CTCATCGCCTTTTCTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0129223      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0135569      --> CTCATCGCCTTT-CTGGTTCTCCCATCATCATATCTATGATAATCACCTT
CT0029985      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0024626      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0022405      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0087176      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0096347      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0077314      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0044540      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0047279      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0050096      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0019322      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0025871      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
ET0028660      --> CTCATCGCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT
CT0072610      --> ......GCCTTT-CTGGTTCTCC-ATCATCATATCTATGATAATCACCTT

               401    -    451
RU06704        --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- ..................................................
ET0145279      <-- GCCTTT-CTTGTCCTTGC................................
CT0132393      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0078691      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGT...
CT0105164      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0115119      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0075631      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0101298      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0103353      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0106598      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0035084      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0106364      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0105059      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0072258      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0075959      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
CT0129613      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0117078      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0108398      <-- GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
CT0065333      --> ..................................................
CT0104081      --> ..................................................
ET0080045      --> ..................................................
ET0108738      --> ..................................................
ET0079193      --> ..................................................
CT0041891      --> ..................................................
ET0043539      --> ..................................................
ET0107240      --> ..................................................
ET0010816      --> ..................................................
CT0114407      --> ..................................................
CT0014270      --> ..................................................
CT0027197      --> ..................................................
CT0064055      --> ..................................................
CT0077094      --> ..................................................
ET0046389      --> ..................................................
ET0076476      --> ..................................................
ET0078151      --> ..................................................
ET0079350      --> ..................................................
ET0079962      --> ..................................................
ET0104495      --> ..................................................
ET0107928      --> ..................................................
ET0108979      --> ..................................................
ET0142300      --> ..................................................
ET0142807      --> ..................................................
CT0047468      --> GCCTTT-CTTGTCCTTGCTTGTAATTG.......................
CT0019519      --> GCCTTTTCTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTt..
ET0129223      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGATTAAGTATT
ET0135569      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGATTAAGTATT
CT0029985      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAG....
CT0024626      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0022405      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
CT0087176      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCT................
CT0096347      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0077314      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0044540      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0047279      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0050096      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0019322      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0025871      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
ET0028660      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT
CT0072610      --> GCCTTT-CTTGTCCTTGCTTGTAATTGCCACTCTAGATCGCTTAAGTATT

               451    -    501
RU06704        --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- ..................................................
ET0145279      <-- ..................................................
CT0132393      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAA..
ET0078691      <-- ..................................................
CT0105164      <-- TTGA..............................................
ET0115119      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCA............
ET0075631      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0101298      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0103353      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0106598      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0035084      <-- TTGATA............................................
ET0106364      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0105059      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATAataccaacttagaagt
ET0072258      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0075959      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
CT0129613      <-- TTGATACAT.........................................
ET0117078      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0108398      <-- TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
CT0065333      --> ..................................................
CT0104081      --> ..................................................
ET0080045      --> ..................................................
ET0108738      --> ..................................................
ET0079193      --> ..................................................
CT0041891      --> ..................................................
ET0043539      --> ..................................................
ET0107240      --> ..................................................
ET0010816      --> ..................................................
CT0114407      --> ..................................................
CT0014270      --> ..................................................
CT0027197      --> ..................................................
CT0064055      --> ..................................................
CT0077094      --> ..................................................
ET0046389      --> ..................................................
ET0076476      --> ..................................................
ET0078151      --> ..................................................
ET0079350      --> ..................................................
ET0079962      --> ..................................................
ET0104495      --> ..................................................
ET0107928      --> ..................................................
ET0108979      --> ..................................................
ET0142300      --> ..................................................
ET0142807      --> ..................................................
CT0047468      --> ..................................................
CT0019519      --> ..................................................
ET0129223      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCA............
ET0135569      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCA............
CT0029985      --> ..................................................
CT0024626      --> TTGATACATTCTTGATCGTT..............................
ET0022405      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
CT0087176      --> ..................................................
CT0096347      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0077314      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0044540      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0047279      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0050096      --> T.................................................
ET0019322      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0025871      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
ET0028660      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC
CT0072610      --> TTGATACATTCTTGATCGTTCCAGTCATGCAATATCCACTTGAGTAAAAC

               501    -    551
RU06704        --> TGTATCGGCAGGAGGAACTGCCTCAAACATGTCACCTCCAGTAATAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ..................................................
ET0040283      <-- ..................................................
ET0145279      <-- ..................................................
CT0132393      <-- ..................................................
ET0078691      <-- ..................................................
CT0105164      <-- ..................................................
ET0115119      <-- ..................................................
ET0075631      <-- TGTATCGGCAGG......................................
ET0101298      <-- TGTATCGGacaaagg...................................
ET0103353      <-- TGTATCGGCAGG......................................
ET0106598      <-- TGTATCGGCAGG......................................
ET0035084      <-- ..................................................
ET0106364      <-- TGTATCGGCAGG......................................
ET0105059      <-- aaaaactag.........................................
ET0072258      <-- TGTATCGGCAGG......................................
ET0075959      <-- TGTATCGGCAGG......................................
CT0129613      <-- ..................................................
ET0117078      <-- TGTATCGGCAGGAGGAACTGCCTCAAACATGTCACCTCCAGTAtatttca
ET0108398      <-- TGTATCGGCAGGAGGAACTGCCTCAAACATGTCACCTCCAGTAATAATTT
CT0065333      --> ..................................................
CT0104081      --> ..................................................
ET0080045      --> ..................................................
ET0108738      --> ..................................................
ET0079193      --> ..................................................
CT0041891      --> ..................................................
ET0043539      --> ..................................................
ET0107240      --> ..................................................
ET0010816      --> ..................................................
CT0114407      --> ..................................................
CT0014270      --> ..................................................
CT0027197      --> ..................................................
CT0064055      --> ..................................................
CT0077094      --> ..................................................
ET0046389      --> ..................................................
ET0076476      --> ..................................................
ET0078151      --> ..................................................
ET0079350      --> ..................................................
ET0079962      --> ..................................................
ET0104495      --> ..................................................
ET0107928      --> ..................................................
ET0108979      --> ..................................................
ET0142300      --> ..................................................
ET0142807      --> ..................................................
CT0047468      --> ..................................................
CT0019519      --> ..................................................
ET0129223      --> ..................................................
ET0135569      --> ..................................................
CT0029985      --> ..................................................
CT0024626      --> ..................................................
ET0022405      --> TGTATCGGCAGGAGGAA.................................
CT0087176      --> ..................................................
CT0096347      --> TGTATCGGCAGGAGGAA.................................
ET0077314      --> TGTATCGGCAGGAGG...................................
ET0044540      --> TGTATCGGCAGGAGGAACTGCCTCAAA.......................
ET0047279      --> TGTATCGGCAGGAGGAACTGCCTCAAA.......................
ET0050096      --> ..................................................
ET0019322      --> TGTATCGGCAGGAGGAACT...............................
ET0025871      --> TGTATCGGCAGGAGGAACT...............................
ET0028660      --> TGTATCGGCAGGAGGAACT...............................
CT0072610      --> TGTATCGGCAGGAGGAACTGCCTCA.........................

               551    -    601
RU06704        --> ACAAAGTTACTTAACTTACCTTAGACAAAGGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0058829      <-- ...................................
ET0040283      <-- ...................................
ET0145279      <-- ...................................
CT0132393      <-- ...................................
ET0078691      <-- ...................................
CT0105164      <-- ...................................
ET0115119      <-- ...................................
ET0075631      <-- ...................................
ET0101298      <-- ...................................
ET0103353      <-- ...................................
ET0106598      <-- ...................................
ET0035084      <-- ...................................
ET0106364      <-- ...................................
ET0105059      <-- ...................................
ET0072258      <-- ...................................
ET0075959      <-- ...................................
CT0129613      <-- ...................................
ET0117078      <-- agtt...............................
ET0108398      <-- ACAAAGTTACTTAACTTACCTTAGACAAAGGTAAC
CT0065333      --> ...................................
CT0104081      --> ...................................
ET0080045      --> ...................................
ET0108738      --> ...................................
ET0079193      --> ...................................
CT0041891      --> ...................................
ET0043539      --> ...................................
ET0107240      --> ...................................
ET0010816      --> ...................................
CT0114407      --> ...................................
CT0014270      --> ...................................
CT0027197      --> ...................................
CT0064055      --> ...................................
CT0077094      --> ...................................
ET0046389      --> ...................................
ET0076476      --> ...................................
ET0078151      --> ...................................
ET0079350      --> ...................................
ET0079962      --> ...................................
ET0104495      --> ...................................
ET0107928      --> ...................................
ET0108979      --> ...................................
ET0142300      --> ...................................
ET0142807      --> ...................................
CT0047468      --> ...................................
CT0019519      --> ...................................
ET0129223      --> ...................................
ET0135569      --> ...................................
CT0029985      --> ...................................
CT0024626      --> ...................................
ET0022405      --> ...................................
CT0087176      --> ...................................
CT0096347      --> ...................................
ET0077314      --> ...................................
ET0044540      --> ...................................
ET0047279      --> ...................................
ET0050096      --> ...................................
ET0019322      --> ...................................
ET0025871      --> ...................................
ET0028660      --> ...................................
CT0072610      --> ...................................