SNPs of unigene RU06731
               1      -     51
RU06731        --> GGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTGCTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> GGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTGCTTCGG
ET0079376      --> ...........................................GCTTCGG
ET0078342      --> ..........................................gctTTCGG
ET0080053      --> .........................................gtctTTCGG
CT0135326      --> ..............................................TCGG
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ....................................agacttacggacgg
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               51     -    101
RU06731        --> CGGG-CTGATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ......................GACATTGTCAGGTGGGGAG-TTT-GG-C
ET0095608      <-- .................................GTGGGGAGGTTT-GG-C
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> CGGG-CTGATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GGct
ET0079376      --> CGGGGCTGATCCGGGGCGGAA-GACATTGTCAGGTGGGGAG-TTT-GGGT
ET0078342      --> CGGG-CTGATCCGGGGCGGAA-GACATTGTCAGGTGGGGAG-TTTTGG-T
ET0080053      --> CGGG-CTGATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-T
CT0135326      --> CGGG-CTGATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-C
ET0077928      --> .......GATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-T
ET0079061      --> .......GATCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-T
ET0073141      --> ...tgaaataCCGGGACGGAAAGACATTGTCAGGTGGGGAG-TTT-GG-T
ET0103482      --> ggactagataCCGGG-CGGAA-GACATTGTCAGGTGGGGAG-TTT-GG-T
CT0104888      --> ......................GACATTGTCAGGTGGGGAG-TTT-GG-C
ET0104618      --> ......................GACATTGTCAGGTGGGGAG-TTT-GG-T
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               101    -    151
RU06731        --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0095608      <-- TGGGGCGGCACATCT-GTTAAAAGATAACGCAGGGTTCCTAAGATGAGCT
ET0027744      <-- ....................AAAGATAACGCAGGTGTCCTAAGATGAGCT
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0078342      --> TGGGGCGGCACATTTTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0080053      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
CT0135326      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0077928      --> TGGGGCGGCACATTTTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0079061      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0073141      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0103482      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
CT0104888      --> TGGGGCGGCACATTT-GTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0104618      --> TGGGGCGGCACATTTTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCT
ET0085941      --> ......................AGATAACGCAGGTGTCCTAAGATGAGCT
ET0142283      --> ...............................AGGTGTCCTAAGATGAGCT
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               151    -    201
RU06731        --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0095608      <-- CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0027744      <-- CAACGAGAACGAGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> CAACGAGAAC-AGAAATCTCGTGTGGAAACAAAA-GGGTAAAAGCTCGTT
ET0078342      --> CAACGAGAAC-AGAAATCTCGTGTGGAAACAAAA-GGGTAAAAGCTCGTT
ET0080053      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
CT0135326      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0077928      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0079061      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0073141      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0103482      --> CAACGAGAAC-AGAAATCTCGTGTGGAAACAAAA-GGGTAAAAGCTCGTT
CT0104888      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0104618      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAAAGGGTAAAAGCTCGTT
ET0085941      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAA-GGGTAAAAGCTCGTT
ET0142283      --> CAACGAGAAC-AGAAATCTCGTGTGGAA-CAAAAAGGGTAAAAGCTCGTT
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               201    -    251
RU06731        --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAT-CG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- TGATTCTGATTTCCAGTACGAATACGAACCGTG.................
ET0095608      <-- TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAT-CG
ET0027744      <-- TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATACG
RH11G127       <-- .......ccgggcagGTACGAATACGAACCGTGAAAGCGTGGCCTAT-CG
RH46BN39       <-- .................ACGAATACGAACCGTGAAAGCGTGGCCTAT-CG
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0078342      --> TGATTCTGATTTCCAGTACGAATACGAAC.....................
ET0080053      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
CT0135326      --> TGATTCTGATTTCCAGTACGA.............................
ET0077928      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0079061      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0073141      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0103482      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
CT0104888      --> TGATTCTGATTTCCAGTACGAATACGAACCGTG.................
ET0104618      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0085941      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
ET0142283      --> TGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCTTAT-CG
CT0083963      --> ............................................TAT-CG
ET0073807      --> .......................................gtcctTAT-CG
ET0078641      --> ............................................TAT-CG
ET0045790      --> .............................................AT-CG
ET0037072      --> ................................................CG
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               251    -    301
RU06731        --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0027744      <-- AT-CCTTTAGAaacctt.................................
RH11G127       <-- AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
RH46BN39       <-- AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> AT-CCTTTAGACCTTTGGAAATTT-AAAGCTAGAGGTGTCAAGAAAAGTT
ET0078342      --> ..................................................
ET0080053      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
CT0135326      --> ..................................................
ET0077928      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0079061      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0073141      --> AT-CCTTTAGACCTTTGGAA-TTT-AA-GCTAGAGGTGTCAAGAAAAGTT
ET0103482      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCAAGAAAAGTT
CT0104888      --> ..................................................
ET0104618      --> ATTCCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCAAGAAAAGTT
ET0085941      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0142283      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAG...............
CT0083963      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0073807      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0078641      --> AT-CCTTTAGACCTTTGGAA-TTTTAAAGCTAGAGGTGTCA-GAAAAGTT
ET0045790      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0037072      --> AT-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0141218      --> .T-CCTTTAGACCTTTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
CT0099831      --> ..............TTGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0015052      --> ...............TGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0043801      --> ...............TGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0106185      --> ...............TGGAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0047302      --> ..................AA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0070945      --> ..............tggaAA-TTT-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0039674      --> .......................T-AAAGCTAGAGGTGTCA-GAAAAGTT
ET0040178      --> .......................T-AAAGCTAGAGGTGTCA-GAAAAGTT
CT0057827      --> .............................CTAGAGGTGTCA-GAAAAGTT
ET0036620      --> ...........................................AAAAGTT
ET0049623      --> ............................................AAAGTT
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               301    -    351
RU06731        --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................  Ethylene
ET0095608      <-- -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAa  Ethylene
ET0027744      <-- ..................................................  Ethylene
RH11G127       <-- -ACCAC-AGGG-ATAACTGGCTCGTGGCAGCCAA-G-CGTTCATAGCGAC  WaterDS
RH46BN39       <-- -ACCAC-AGGG-ATAACTGGCTCGTGGCAGCCAA-G-CGTTCATAGCGAC  WaterDS
ET0147830      <-- ..................................................  Ethylene
ET0147848      <-- ..................................................  Ethylene
ET0146355      <-- ..................................................  Ethylene
CT0126447      <-- ..................................................  Control
ET0073464      <-- ..................................................  Ethylene
ET0090884      <-- ..................................................  Ethylene
ET0108922      <-- ..................................................  Ethylene
CT0076253      <-- ..................................................  Control
ET0096396      <-- ..................................................  Ethylene
ET0129321      <-- ..................................................  Ethylene
ET0104638      <-- ..................................................  Ethylene
ET0071395      <-- ..................................................  Ethylene
ET0105414      <-- ..................................................  Ethylene
ET0133314      <-- ..................................................  Ethylene
ET0096861      <-- ..................................................  Ethylene
ET0095075      <-- ..................................................  Ethylene
CT0120118      <-- ..................................................  Control
ET0079774      <-- ..................................................  Ethylene
ET0080424      <-- ..................................................  Ethylene
ET0101552      <-- ..................................................  Ethylene
ET0103997      <-- ..................................................  Ethylene
ET0124383      <-- ..................................................  Ethylene
ET0135311      <-- ..................................................  Ethylene
ET0137793      <-- ..................................................  Ethylene
ET0138838      <-- ..................................................  Ethylene
ET0138861      <-- ..................................................  Ethylene
ET0139975      <-- ..................................................  Ethylene
ET0079300      <-- ..................................................  Ethylene
ET0082190      <-- ..................................................  Ethylene
ET0139820      <-- ..................................................  Ethylene
ET0107933      <-- ..................................................  Ethylene
CT0135605      <-- ..................................................  Control
ET0130465      <-- ..................................................  Ethylene
ET0038426      --> ..................................................  Ethylene
ET0079376      --> -ACCAC-AGGG-ATAACTG...............................  Ethylene
ET0078342      --> ..................................................  Ethylene
ET0080053      --> -ACCAC-AGGG-ATAACTGG..............................  Ethylene
CT0135326      --> ..................................................  Control
ET0077928      --> -ACCAC-AGGG-ATAACTG...............................  Ethylene
ET0079061      --> -ACCAC-AGGG-ATAACTG...............................  Ethylene
ET0073141      --> -ACCAC-AGGG-ATAAC.................................  Ethylene
ET0103482      --> -ACCACGAGGG-ATAACTG...............................  Ethylene
CT0104888      --> ..................................................  Control
ET0104618      --> -ACCAC-AGGG-ATAAC.................................  Ethylene
ET0085941      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0142283      --> ..................................................  Ethylene
CT0083963      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAAAGACGTTCATAGCGAC  Control
ET0073807      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0078641      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0045790      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0037072      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0141218      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
CT0099831      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Control
ET0015052      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0043801      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0106185      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0047302      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0070945      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0039674      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0040178      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
CT0057827      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Control
ET0036620      --> -ACCAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0049623      --> TACCAC-AGGGGATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0025160      --> ...CAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0041389      --> ...CAC-AGGG-ATAACTGGCTTGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
ET0057983      --> ........ataaactaggacttaGTGGCAGCCAA-G-CGTTCATAGCGAC  Ethylene
CT0063592      --> ..................................................  Control
ET0040738      --> ..................................................  Ethylene
ET0124033      --> ..................................................  Ethylene
ET0127521      --> ..................................................  Ethylene
ET0003391      --> ..................................................  Ethylene

               351    -    401
RU06731        --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- cgttag............................................
ET0027744      <-- ..................................................
RH11G127       <-- GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
RH46BN39       <-- GTTGCCTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTG.........
ET0142283      --> ..................................................
CT0083963      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCCTCCTATCATTGTGAAGCAGA
ET0073807      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0078641      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0045790      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0037072      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0141218      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
CT0099831      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0015052      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0043801      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0106185      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0047302      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0070945      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0039674      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0040178      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
CT0057827      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0036620      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0049623      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0025160      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0041389      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
ET0057983      --> GTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGA
CT0063592      --> ......................ttttccttattctatttgtTGAAGCAGA
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               401    -    451
RU06731        --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
RH46BN39       <-- ATTCACCAAGTGTTGGATTGTTCGCCCACCAATAGGGAACGTGAGCTGGG
ET0147830      <-- ..................................................
ET0147848      <-- ..................................................
ET0146355      <-- ..................................................
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0073807      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0078641      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0045790      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0037072      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0141218      --> ATTCACCAAGTGTTGGATTGTTTACCCACCAATAGGGAAC-TGAGCTGGG
CT0099831      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0015052      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0043801      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0106185      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0047302      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0070945      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0039674      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0040178      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
CT0057827      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0036620      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0049623      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0025160      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0041389      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0057983      --> ATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
CT0063592      --> ATTCACCAAGTGTTGGATTGTTCACCCACCATTAGGGAACGTGAGCTGGG
ET0040738      --> ..............GGATTGTTCACCCACCAATAGGGAACGTGAGCTGGG
ET0124033      --> .......................................CGTGAGCTGGG
ET0127521      --> ........................................GTGAGCTGGG
ET0003391      --> ..................................................

               451    -    501
RU06731        --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ATTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
RH46BN39       <-- TTTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0147830      <-- ...AGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0147848      <-- .....ACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0146355      <-- .............................................CAGTG
CT0126447      <-- ..................................................
ET0073464      <-- ..................................................
ET0090884      <-- ..................................................
ET0108922      <-- ..................................................
CT0076253      <-- ..................................................
ET0096396      <-- ..................................................
ET0129321      <-- ..................................................
ET0104638      <-- ..................................................
ET0071395      <-- ..................................................
ET0105414      <-- ..................................................
ET0133314      <-- ..................................................
ET0096861      <-- ..................................................
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ..................................................
ET0080424      <-- ..................................................
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ..................................................
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> TTTAGACCG.........................................
ET0073807      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTA-TGATGACAGTG
ET0078641      --> TTTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATtcgacta
ET0045790      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCC..............
ET0037072      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCC-A-TGATGACAGTG
ET0141218      --> ATTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
CT0099831      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTTTACCCCTACTGATGACAGTG
ET0015052      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0043801      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0106185      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0047302      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0070945      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0039674      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0040178      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
CT0057827      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0036620      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0049623      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCC-ACTGATGACAGTG
ET0025160      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0041389      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0057983      --> ATTAGACCGTCG......................................
CT0063592      --> TTTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0040738      --> ATTAGACCGTCGTGAGACAGGTTTAGTTTT-A-CCCTACTGATGACAGTG
ET0124033      --> TTTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0127521      --> TTTAGACCGTCGTGAGACAGGTT-AGTTTT-A-CCCTACTGATGACAGTG
ET0003391      --> ..................................................

               501    -    551
RU06731        --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- TCGCAATAGTAATTCAACCTAGT...........................
RH46BN39       <-- TCGCAATAGTAATTCAACCTAGT...........................
ET0147830      <-- TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0147848      <-- TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0146355      <-- TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
CT0126447      <-- ..........................AGAGGAACCGTTGATTCGCACAAT
ET0073464      <-- ...................................GTTGATTCGCACAAT
ET0090884      <-- ...............................ccggttaGATTCGCACAAT
ET0108922      <-- ................................cggttaGATTCGCACAAT
CT0076253      <-- .......................................ATTCGCACAAT
ET0096396      <-- ........................................TTCGCACAAT
ET0129321      <-- ........................................TTCGCACAAT
ET0104638      <-- ..........................................gtCACAAT
ET0071395      <-- ..............................................CAAT
ET0105414      <-- ..............................................CAAT
ET0133314      <-- ..............................................CAAT
ET0096861      <-- ...............................................AAT
ET0095075      <-- ..................................................
CT0120118      <-- ..................................................
ET0079774      <-- ................................................tt
ET0080424      <-- ................................................tt
ET0101552      <-- ..................................................
ET0103997      <-- ..................................................
ET0124383      <-- ..................................................
ET0135311      <-- ..................................................
ET0137793      <-- ..................................................
ET0138838      <-- ..................................................
ET0138861      <-- ................................................tt
ET0139975      <-- ..................................................
ET0079300      <-- ..................................................
ET0082190      <-- ..................................................
ET0139820      <-- ..................................................
ET0107933      <-- ..................................................
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> TCG...............................................
ET0078641      --> gtcgtccgactaaagtt.................................
ET0045790      --> ..................................................
ET0037072      --> TCGCAATAGTAA......................................
ET0141218      --> TCGCAATAGTAATTCA..................................
CT0099831      --> TCGCAATAGTAATTC...................................
ET0015052      --> TCGCAATAGTAATTC...................................
ET0043801      --> TCGCAATAGTAATTCAA.................................
ET0106185      --> TCGCAATAGTAATTCAACCTAGTACG........................
ET0047302      --> TCGCAATAGTAATTCAACCTAGTACGAG......................
ET0070945      --> TCGCAATAGTAATTCAACCTAGTAC.........................
ET0039674      --> TCGCAATAGTAATTCAA.................................
ET0040178      --> TCGCAATAGTAATTCAACCTAGTACGA.......................
CT0057827      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTT............
ET0036620      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0049623      --> TCGCAATAGTAATTCAACCT..............................
ET0025160      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0041389      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCAC...
ET0057983      --> ..................................................
CT0063592      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAA.
ET0040738      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0124033      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0127521      --> TCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAAT
ET0003391      --> ..................................................

               551    -    601
RU06731        --> TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0147848      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0146355      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
CT0126447      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0073464      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0090884      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0108922      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
CT0076253      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0096396      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0129321      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0104638      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0071395      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0105414      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0133314      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0096861      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0095075      <-- TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
CT0120118      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0079774      <-- aGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0080424      <-- aGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0101552      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0103997      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0124383      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0135311      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0137793      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0138838      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0138861      <-- aGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0139975      <-- .GGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0079300      <-- ..GTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0082190      <-- ..GTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0139820      <-- ...TCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0107933      <-- .....ATCGCGCTTGGTTGAAAAGACCAGTGGCGCGAAGCTACCGTGCGC
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> TGG...............................................
ET0049623      --> ..................................................
ET0025160      --> TGGT..............................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> TGGTCATCGCGCTTGGTTGAAAAG-CCAG.....................
ET0124033      --> TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0127521      --> TGGTCATCGCGCTTGGTTGAAAAG-CCAGTGGCGCGAAGCTACCGTGCGC
ET0003391      --> ..................................................

               601    -    651
RU06731        --> TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0147848      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0146355      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
CT0126447      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0073464      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0090884      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0108922      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
CT0076253      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0096396      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0129321      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0104638      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0071395      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0105414      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0133314      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0096861      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0095075      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
CT0120118      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0079774      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0080424      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0101552      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0103997      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0124383      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0135311      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0137793      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0138838      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0138861      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0139975      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0079300      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0082190      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0139820      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0107933      <-- TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGGCTAGAAGCGACG
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0127521      --> TGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGG-CTAGAAGCGACG
ET0003391      --> ......................................CTAGAAGCGACG

               651    -    701
RU06731        --> CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0147848      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0146355      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
CT0126447      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0073464      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0090884      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0108922      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
CT0076253      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGC...........
ET0096396      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0129321      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0104638      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0071395      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0105414      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0133314      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0096861      <-- AATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0095075      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
CT0120118      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0079774      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0080424      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0101552      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0103997      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0124383      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0135311      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0137793      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0138838      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0138861      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0139975      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0079300      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0082190      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0139820      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
ET0107933      <-- CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGGCCCCC
CT0135605      <-- ..................................................
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAcgg....
ET0127521      --> CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAcgg....
ET0003391      --> CATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCTAGCCCCCC

               701    -    751
RU06731        --> AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCAACAAGCAAGAACAAAGACTAG
ET0147848      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0146355      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
CT0126447      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-GACTAG
ET0073464      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GAACAAAGACTAG
ET0090884      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0108922      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
CT0076253      <-- ..................................................
ET0096396      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0129321      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0104638      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0071395      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0105414      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0133314      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0096861      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0095075      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
CT0120118      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0079774      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0080424      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0101552      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0103997      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0124383      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0135311      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0137793      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0138838      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0138861      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0139975      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0079300      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0082190      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0139820      <-- AAAGGCACGTGTCGTTGGTGAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
ET0107933      <-- AAAGGCACGTGTCGTTGG-GAAGCCCTCA-CA-GCA-GA-CAA-G-CT-G
CT0135605      <-- ................................agcaagaacaaagactag
ET0130465      <-- ..................................................
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> AAAGGCACGTGTC.....................................

               751    -    801
RU06731        --> -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ..................................................
ET0095608      <-- ..................................................
ET0027744      <-- ..................................................
RH11G127       <-- ..................................................
RH46BN39       <-- ..................................................
ET0147830      <-- ACG-AAGGGACCGACCTTAGAAATTAACAAATTTACTAA-CCGAAG....
ET0147848      <-- -CG-A-GGG-CCG-CCTT-GAAATTTACAAATTTTCTTA-CCGtaag...
ET0146355      <-- -CG-A-GGG-CCG-CCTT-GAAATTA-CAAATTTACTAA-CCGAAGA-CG
CT0126447      <-- ACG-AAGGGACCGACCTTAGAAATTAACAAATTTACTA............
ET0073464      <-- ACG-AAGGGACCGACCTTAGAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0090884      <-- TCGTA-GGGTCCGTCCTTTGTAATTTACTAATTTTCTTA-CCGTAGT-CG
ET0108922      <-- -CG-A-GGG-CCG-CCTT-GAAATTA-CAAATTT-CTAA-CCGAAGA-CG
CT0076253      <-- ..................................................
ET0096396      <-- -CG-A-GGG-CCG-CCTT-GAA-TT-AC-AATTTTCTTA-CCGTAGT-CG
ET0129321      <-- -CG-A-GGG-CCG-CCTT-GAAATTA-CAAATTT-CTAA-CCGAAGA-CG
ET0104638      <-- -CG-A-GGG-CCG-CCTTAGAAATTAACAAATTTACTAAACCGAAagaac
ET0071395      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0105414      <-- -CG-A-GGG-CCG-CCTT-GAA-TT-AC-AATTTTCTTA-CCGTAGT-CG
ET0133314      <-- -CG-A-GGG-CCG-CCTT-GAA-TT-ACTAATTTTCTTA-CCGTAGT-CG
ET0096861      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0095075      <-- -CG-A-GGG-CCG-CCTTAGAAATTAACAAATTTACTAA-CCGAAGAACG
CT0120118      <-- -CG-AAGGGACCGACCTTAGAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0079774      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0080424      <-- -CG-A-GGG-CCG-CCTT-GAATTTA-CTAATTTTCTTA-CCGTAGT-CG
ET0101552      <-- -CG-A-GGG-CCG-CCTT-GAA-TTAACAAATTTACTAA-CCGAAGA-CG
ET0103997      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0124383      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0135311      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0137793      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0138838      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0138861      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0139975      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0079300      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0082190      <-- -CG-A-GGG-CCG-CCTT-GAA-TT-AC-AATTTTCTTA-CCG-AG--CG
ET0139820      <-- -CG-A-GGG-CCG-CCTT-GAA-TT-ACTAATTTTCTTA-CCGTAGT-CG
ET0107933      <-- -CG-A-GGG-CCG-CCTT-GAAATTAACAAATTTACTAA-CCGAAGA-CG
CT0135605      <-- acgaaggggaccgaccttaGAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0130465      <-- ..cgaagggaccgaccttaGAAATTAACAAATTTACTAA-CCGAAGA-CG
ET0038426      --> ..................................................
ET0079376      --> ..................................................
ET0078342      --> ..................................................
ET0080053      --> ..................................................
CT0135326      --> ..................................................
ET0077928      --> ..................................................
ET0079061      --> ..................................................
ET0073141      --> ..................................................
ET0103482      --> ..................................................
CT0104888      --> ..................................................
ET0104618      --> ..................................................
ET0085941      --> ..................................................
ET0142283      --> ..................................................
CT0083963      --> ..................................................
ET0073807      --> ..................................................
ET0078641      --> ..................................................
ET0045790      --> ..................................................
ET0037072      --> ..................................................
ET0141218      --> ..................................................
CT0099831      --> ..................................................
ET0015052      --> ..................................................
ET0043801      --> ..................................................
ET0106185      --> ..................................................
ET0047302      --> ..................................................
ET0070945      --> ..................................................
ET0039674      --> ..................................................
ET0040178      --> ..................................................
CT0057827      --> ..................................................
ET0036620      --> ..................................................
ET0049623      --> ..................................................
ET0025160      --> ..................................................
ET0041389      --> ..................................................
ET0057983      --> ..................................................
CT0063592      --> ..................................................
ET0040738      --> ..................................................
ET0124033      --> ..................................................
ET0127521      --> ..................................................
ET0003391      --> ..................................................

               801    -    851
RU06731        --> G-A-CGGGTTAGTAATTCCTTTT-GTTCTTAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0085903      <-- ...................................
ET0095608      <-- ...................................
ET0027744      <-- ...................................
RH11G127       <-- ...................................
RH46BN39       <-- ...................................
ET0147830      <-- ...................................
ET0147848      <-- ...................................
ET0146355      <-- G-A-CGGGT..........................
CT0126447      <-- ...................................
ET0073464      <-- G-A-CGGG...........................
ET0090884      <-- G-T-CGGGT..........................
ET0108922      <-- G-A-CG.............................
CT0076253      <-- ...................................
ET0096396      <-- G-T-CGGGTTAGTAAT...................
ET0129321      <-- G-A-CGGGTAAGAAAT...................
ET0104638      <-- ggaacgggta.........................
ET0071395      <-- G-A-CGGGTagaatcctttgc..............
ET0105414      <-- G-T-CGGGTTAGTAATTCCTTTTTGTTCTT.....
ET0133314      <-- G-T-CGGGTTAGTA.....................
ET0096861      <-- G-A-CGGGTAAGAAATacgtttagacaag......
ET0095075      <-- GAA-CGGGTaaagaaaataaacctttaaagaaac.
CT0120118      <-- G-A-CGGGTAAGAAATaacctttaagaacaaag..
ET0079774      <-- G-A-CGGGgtaagaaaaaacctttagaacaaag..
ET0080424      <-- G-T-CGGGTTAGTAATTCCTTTT-GTTCTTAGTTT
ET0101552      <-- G-A-CGGGTaaagaaaataacctttaagaacaaag
ET0103997      <-- G-A-CGGGTaaagaaaataacctttaagaacaaa.
ET0124383      <-- G-A-CGGGTAAGAAATACCTTTagacaag......
ET0135311      <-- G-A-CGGGTAAGAAATACCTTTaagaacaaag...
ET0137793      <-- G-A-CGGGTAAGAAATACCTTTagacaag......
ET0138838      <-- G-A-CGGGTAAGAAATACCTTTagacaag......
ET0138861      <-- G-A-CGGGTAAGAAATACCTTTagacaag......
ET0139975      <-- G-A-CGGGTAAGAAATACCTTTagacaag......
ET0079300      <-- G-A-CGGGTaagaaaataacctttaagaacaaag.
ET0082190      <-- G-T-CGGGTTAGTAATTCCTTTT-GTctagt....
ET0139820      <-- G-T-CGGGTTAGTAATTCCTTTT-GTTCTTAtt..
ET0107933      <-- G-AACGGGTaaagaaaat.................
CT0135605      <-- G-A-C..............................
ET0130465      <-- G-A-CGGGTAAGAAAT...................
ET0038426      --> ...................................
ET0079376      --> ...................................
ET0078342      --> ...................................
ET0080053      --> ...................................
CT0135326      --> ...................................
ET0077928      --> ...................................
ET0079061      --> ...................................
ET0073141      --> ...................................
ET0103482      --> ...................................
CT0104888      --> ...................................
ET0104618      --> ...................................
ET0085941      --> ...................................
ET0142283      --> ...................................
CT0083963      --> ...................................
ET0073807      --> ...................................
ET0078641      --> ...................................
ET0045790      --> ...................................
ET0037072      --> ...................................
ET0141218      --> ...................................
CT0099831      --> ...................................
ET0015052      --> ...................................
ET0043801      --> ...................................
ET0106185      --> ...................................
ET0047302      --> ...................................
ET0070945      --> ...................................
ET0039674      --> ...................................
ET0040178      --> ...................................
CT0057827      --> ...................................
ET0036620      --> ...................................
ET0049623      --> ...................................
ET0025160      --> ...................................
ET0041389      --> ...................................
ET0057983      --> ...................................
CT0063592      --> ...................................
ET0040738      --> ...................................
ET0124033      --> ...................................
ET0127521      --> ...................................
ET0003391      --> ...................................