1 - 51
RU22796 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- ........GAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
RH36AL105 <-- ........GAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0034968 <-- ..................................ATTTGGTGTCTCCAGT
CT0053831 <-- ..................................................
CT0129882 <-- ..................................................
CT0099010 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099178 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099317 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099409 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099410 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099505 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099777 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0099816 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0100193 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0100706 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0100904 --> TAAAAAAAGAGAAGAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0100912 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0101449 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0103431 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0108145 --> TAAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0098895 --> .tAAAAAAGAGA-GAGAGAACAGCAGCTGCCCTAATTTGGTGTCTCCAGT
CT0118303 --> ..................................................
51 - 101
RU22796 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGACTG WaterDS
RH36AL105 <-- CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGACTG WaterDS
CT0034968 <-- CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0053831 <-- .................................................. Control
CT0129882 <-- .................................................. Control
CT0099010 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099178 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099317 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099409 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099410 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099505 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099777 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0099816 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0100193 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0100706 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0100904 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0100912 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0101449 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0103431 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0108145 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0098895 --> CTCGCCTCCTCCTGCTGCTGCTAACAGTCTGCGATTTAGGCAAATGGCTG Control
CT0118303 --> .................................................. Control
101 - 151
RU22796 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
RH36AL105 <-- CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0034968 <-- CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0053831 <-- ..................................................
CT0129882 <-- ..................................................
CT0099010 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099178 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099317 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099409 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099410 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099505 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099777 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0099816 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0100193 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0100706 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0100904 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0100912 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0101449 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0103431 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0108145 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0098895 --> CTGAAGAGGACTCCCTCGAAGAAATCGTTGCGGCACGAAAGGAGAGGCTC
CT0118303 --> ..................................................
151 - 201
RU22796 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
RH36AL105 <-- AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0034968 <-- AGAGCCCTCAAAG.....................................
CT0053831 <-- ........................................ATGAGGACTC
CT0129882 <-- ..................................................
CT0099010 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099178 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099317 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099409 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099410 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099505 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099777 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0099816 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0100193 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0100706 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0100904 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0100912 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0101449 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0103431 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0108145 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0098895 --> AGAGCCCTCAAAGCTGCACAGCAACTGTTAAACACTCCAGATGAGGACTC
CT0118303 --> ..................................................
201 - 251
RU22796 --> TGCTCCACTGGAAAGTAACACTAACGATGACCAGGAAACGAGCAATGAAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- TGCTCCACTGGAAAGTAACACTAACGATGACCAGGAAACGAGCAATGAAA
RH36AL105 <-- TGCTCCACTGGAAAGTAACACTAACGATGACCAGGAAACGAGCAATGAAA
CT0034968 <-- ..................................................
CT0053831 <-- TGCTCCACTGGAAAGTAACACTAACGATGACCAGGAAACGAGCAATGAAA
CT0129882 <-- ..................................................
CT0099010 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0099178 --> TGCTCCACTGGAAAGTAACACTAACGATcg....................
CT0099317 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0099409 --> TGCTCCACTGGAAAGTA.................................
CT0099410 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0099505 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0099777 --> TGCTCCACTGGAAAGTAACACTAACGATcg....................
CT0099816 --> TGCTCCACTGGAAAGTAACACTAACGATcg....................
CT0100193 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0100706 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0100904 --> TGCTCCACTGGAAAGTA.................................
CT0100912 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0101449 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0103431 --> TGCTCCACTGGAAAGTAACACTAACGATcg....................
CT0108145 --> TGCTCCACTGGAAAGTAACACTAACG........................
CT0098895 --> TGCTCCACTGGAAAGTAACACTAACGA.......................
CT0118303 --> ..................................................
251 - 301
RU22796 --> CTCCTGATGGGGATGAAACTACCAACATGAAATTCCGAAATTATGTTCCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- CTCCTGATGGGGATGAAACTACCAACATGAAATTCCGAAATTATGTTCCT
RH36AL105 <-- CTCCTGATGGGGATGAAACTACCAACATGAAATTCCGAAATTATGTTCCT
CT0034968 <-- ..................................................
CT0053831 <-- CTCCTGATGGGGATGAAACTACCAACATGAAATTCCGAAATTATGTTCCT
CT0129882 <-- ..................................................
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> ......ATGGGGATGAAACTACCAACATGAAATTCCGAAATTATGTTCCT
301 - 351
RU22796 --> CATGATAAGAAGCTTCAGGAAGGGAAGCTAGATCCACCAAAACCATCCAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- CATGATAAGAAGCTTCAGGAAGGGAAGCTAGATCCACCAAAACCATCCAA
RH36AL105 <-- CATGATAAGAAGCTTCAGGAAGGGAAGCTAGATCCACCAAAACCATCCAA
CT0034968 <-- ..................................................
CT0053831 <-- CATGATAAGAAGCTTCAGGAAGGGAAGCTAGATCCACCAAAACCATCCAA
CT0129882 <-- ..............................GATCCACCAAAACCATCCAA
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> CATGATAAGAAGCTTCAGGAAGGGAAGCTAGATCCACCAAAACCATCCAA
351 - 401
RU22796 --> GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
RH36AL105 <-- GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
CT0034968 <-- ..................................................
CT0053831 <-- GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
CT0129882 <-- GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> GTTTGAAGACCCTGTTGCAGCAGTGCCTCCTCCATCAGAGAAGAAAGAGG
401 - 451
RU22796 --> ACCCATTCGTGAATATTGCTCCTAAAAAACCAAACTGGGAACTTCGTAGG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- ACCCATTCGTGAATATTGCTCCTAAAAAACCAAACTGGGAACTTCGTAGG
RH36AL105 <-- ACCCATTCGTGAATATTGCTCCTAAAAAACCAAACTGGGAACTTCGTAGG
CT0034968 <-- ..................................................
CT0053831 <-- ACCCATTCGTGAATATTGCTCCTAAAAA......................
CT0129882 <-- ACCCATTCGTGAATATTGCTCCTAAAAAACCAAACTGGGAACTTCGTAGG
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> ACCCATTCGTGAATATTGCTCCTAAA........................
451 - 501
RU22796 --> GATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGAACCCAGAAGGCAAT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- GATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGAACCCAGAAGGCAAT
RH36AL105 <-- GATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGAACCCAGAAGGCAAT
CT0034968 <-- ..................................................
CT0053831 <-- ..................................................
CT0129882 <-- GATGTGCAGAAGAAGCTTGA..............................
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> ..................................................
501 - 551
RU22796 --> GTGTAAACTTATGGAACAAGAAAAGCAGAGGCAACTGGATGAAGACAGCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- GTGTAAACTTATGGAACAAGAAAAGCAGAGGCAACTGGATGAAGACAGCA
RH36AL105 <-- GTGTAAACTTATGGAACAAGAAAAGCAGAGGCAACTGGATGAAGACAGCA
CT0034968 <-- ..................................................
CT0053831 <-- ..................................................
CT0129882 <-- ..................................................
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> ..................................................
551 - 601
RU22796 --> TCAATGATGCAGGGGACTAGTGTTAGAAGTTCAAGAGTTTACTTTACACA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH22Y148 <-- TCAATGATGCAGGGGACTAGTGTTAGAAGTTCAAGAGTTTACTTTACACA
RH36AL105 <-- TCAATGATGCAGGGGACTAGTGTTAGAAGTTCAAGAGTTTACTTTACACA
CT0034968 <-- ..................................................
CT0053831 <-- ..................................................
CT0129882 <-- ..................................................
CT0099010 --> ..................................................
CT0099178 --> ..................................................
CT0099317 --> ..................................................
CT0099409 --> ..................................................
CT0099410 --> ..................................................
CT0099505 --> ..................................................
CT0099777 --> ..................................................
CT0099816 --> ..................................................
CT0100193 --> ..................................................
CT0100706 --> ..................................................
CT0100904 --> ..................................................
CT0100912 --> ..................................................
CT0101449 --> ..................................................
CT0103431 --> ..................................................
CT0108145 --> ..................................................
CT0098895 --> ..................................................
CT0118303 --> ..................................................
601 - 651
RU22796 --> TAAAAGAGGAGGCCAGT
~~~~~~~~~~~~~~~~~
RH22Y148 <-- TAAAAGAGGAGGCCAGT
RH36AL105 <-- TAAAAGAGGAGGCCAGT
CT0034968 <-- .................
CT0053831 <-- .................
CT0129882 <-- .................
CT0099010 --> .................
CT0099178 --> .................
CT0099317 --> .................
CT0099409 --> .................
CT0099410 --> .................
CT0099505 --> .................
CT0099777 --> .................
CT0099816 --> .................
CT0100193 --> .................
CT0100706 --> .................
CT0100904 --> .................
CT0100912 --> .................
CT0101449 --> .................
CT0103431 --> .................
CT0108145 --> .................
CT0098895 --> .................
CT0118303 --> .................
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