SNPs of unigene RU22879
               1      -     51
RU22879        --> TTTTTTTTTACGCAACAAGAGGCTTCATTTACAGGAATTCAGTTCCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> TTTTTTTTTACGCAACAAGAGGCTTCATTTACAGGAATTCAGTTCCTTGG
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               51     -    101
RU22879        --> TACACAAATATGTTCTTTTATTACAGTAATTGTTGTGTTTACCGTATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> TACACAAATATGTTCTTTTATTACAGTAATTGTTGTGTTTACCGTATGAA
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               101    -    151
RU22879        --> TCCCATGTGAACATATTATTACTCGATCCCTGTCTCGGGAGATGCTTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> TCCCATGTGAACATATTATTACTCGATCCCTGTCTCGGGAGATGCTTCGC
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               151    -    201
RU22879        --> TAGTCTCTACAAACATGTAAGATCTTACAAACAGGTAAGATCACAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> TAGTCTCTACAAACATGTAAGATCTTACAAACAGGTAAGATCACAACAAA
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               201    -    251
RU22879        --> GTTATAGtaactgtctaaatataagagaccaaaaatttctgagcgtctgc
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> GTTATAG...........................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               251    -    301
RU22879        --> ttcaaacttgtgtagcagctaaccaatatacttcaactcacattgtggtA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> .................................................A
RH03B168       --> .................................................A
RH06A66        --> .................................................A
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               301    -    351
RU22879        --> CGAATCAATGATGGCATCTGAAAGGTATTCACATTTCGCCAAATTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ................TCTGAAAGGTATTCACATTTCGCCAAATTCAATC
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> CGAATCAATGATGGCATCTGAAAGGTATTCACATTTCGCCAAATTCAATC
RH03B168       --> CGAATCAATGATGGCATCTGAAAGGTATTCACATTTCGCCAAATTCAATC
RH06A66        --> CGAATCAATGATGGCATCTGAAAGGTATTCACATTTCGCCAAATTCAATC
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               351    -    401
RU22879        --> CAGCCAGGGATATTCTTCCGTCCTTTGTCATGAATACATGCCACTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- CAGCCAGGGATATTCTTCCGTCCTTTGTCATGAATACATGCCACTTGTTT
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> CAGCCAGCGATATTCTTCCGTCCTTTGTCATGAATACATGCCACTTGTTT
RH03B168       --> CAGCCAGGGATATTCTTCCGTCCTTTGTCATGAATACATGCCACTTGTTT
RH06A66        --> CAGCCAGGGATATTCTTCCGTCCTTTGTCATGAATACATGCCACTTGTTT
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               401    -    451
RU22879        --> GTCATATTCTCAGTCTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- GTCATATTCTCAGTCTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
CT0122738      <-- ..............CTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> GTCATATTCTCAGTCTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
RH03B168       --> GTCATATTCTCAGTCTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
RH06A66        --> GTCATATTCTCAGTCTGAGTTTTGTTCAAGCCTGTGAATGAAAACATGCC
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               451    -    501
RU22879        --> AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
CT0122738      <-- AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
ET0050704      <-- .......................AATCCTTTCCACTCTTATCTTTTGTCG
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
RH03B168       --> AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
RH06A66        --> AATCTGCTTAAGTATAAATGACCAATCCTTTCCACTCTTATCTTTTG-CG
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               501    -    551
RU22879        --> CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCt
CT0122738      <-- CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCA
ET0050704      <-- CACAGGCTATCGTATAGTTTTTGTTCTCACATTCTTTATTCTTCCAGCCA
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCA
RH03B168       --> CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCA
RH06A66        --> CACAGGCTATCGTATAGTTTTTGT-CTCACATTCTTTATTCTTCCAGCCA
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               551    -    601
RU22879        --> TCATTTCCATCTCTGCTTTCCACTCACTGAAGAGTGTCGGATCCCCAA-C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- tcc...............................................  Control
CT0122738      <-- TCATTTCCATCTCTGCTTTCCACTCACTGAAAAGTGTCGGATCCCCAA-C  Control
ET0050704      <-- TCATTTCCATCTCTGCTTTCCACTCACTGAAAAGTGTCGGATCCCCAA-C  Ethylene
ET0032556      <-- ..................................................  Ethylene
CT0093240      <-- ..................................................  Control
CT0072225      <-- ..................................................  Control
CT0034945      <-- ..................................................  Control
CT0014568      <-- ..................................................  Control
CT0060213      <-- ..................................................  Control
ET0098549      <-- ..................................................  Ethylene
CT0023861      --> ..................................................  Control
RH02a15        --> TCATTTCCATCTCTGCTTTCCACTCACTGAAGAGTGTCGGATCCCCAA-C  WaterDS
RH03B168       --> TCATTTCCATCTCTGCTTTCCACTCACTGAAGAGTGTCGGATCCCCAA-C  WaterDS
RH06A66        --> TCATTTCCATCTCTGCTTTCCACTCACTGAAGAGTGTCGGATCCCCAA-C  WaterDS
CT0024317      --> ....................CACTCACTGAAAAGTGTCGGATCCCCAAAC  Control
CT0066802      --> .........................ACTGAAAAGTGTCGGATCCCCAA-C  Control
CT0078304      --> ..................................................  Control
ET0131886      --> ..................................................  Ethylene

               601    -    651
RU22879        --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGTACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGTACA...
ET0050704      <-- AATATTGGCCACGATCTTAGCCCC..........................
ET0032556      <-- .............................ataGCGGGTTTGAGTACATAG
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGT......
RH03B168       --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGT......
RH06A66        --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGT......
CT0024317      --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGTACATAG
CT0066802      --> AATATTGGCCACGATCTTAGCCCCGTGAATAGGCGGGTTTGAGTACATAG
CT0078304      --> .............................TAGGCGGGTTTGAGTACATAG
ET0131886      --> ..................................................

               651    -    701
RU22879        --> GTCGAGCAAGCCTCTTCAGTTGACTCTTTACCCTTACTGCTGTATCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- GTCGAGCAAGCCTCTTCAGTTGACTCTTTACCCTTACTGCTGTATCAGAT
CT0093240      <-- ......................................GCTGTATCAGAT
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> GTCGAGCAAGCCTCTTCAGTTGACTCTTTACCCTTACTGCTGTATCAGAT
CT0066802      --> GTCGAGCAAGCCTCTTCAGTTGACTCTTTACCCTTACTGCTGTATCAGAT
CT0078304      --> GTCGAGCAAGCCTCTTCAGTTGACTCTTTACCCTTACTGCTGTATCAGAT
ET0131886      --> ..................................................

               701    -    751
RU22879        --> GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
CT0093240      <-- GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
CT0072225      <-- ..................ttaGCTCCAATTCTTTCAGCATAGAGACCAAG
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
CT0066802      --> GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
CT0078304      --> GAGGTCAAGACAACATTAATTGCTCCAATTCTTTCAGCATAGAGACCAAG
ET0131886      --> ..................................................

               751    -    801
RU22879        --> GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
CT0093240      <-- GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
CT0072225      <-- GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
CT0066802      --> GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCACGTGCGGCAA
CT0078304      --> GTTTTTACTGTACGACTGAGCAACCAGGAGCTCCATACCA..........
ET0131886      --> ............................AGCTCCATACCACGTGCGGCAA

               801    -    851
RU22879        --> ACAATCTGACAGATGCAGCATCAGCATCCAAGCTTCCACTAGCAAATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ACAATCTGACAGATGCAGCATCAGCATCCAAagc................
CT0093240      <-- ACAATCTGACAGATGCAGCATCAGCATCCAAGCTTCCACTAGCAAATCCC
CT0072225      <-- ACAATCTGACAGATGCAGCATCAGCATCCAAGCTTCCACTAGCAAATCCC
CT0034945      <-- ..................................................
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> A.................................................
CT0078304      --> ..................................................
ET0131886      --> ACAATCTGACAGATGCAGCATCAGCATCCAAGCTTCCACTAGCAAATCCC

               851    -    901
RU22879        --> TGGTATGCAACGTCAAAAAAGGGGATATGGTTTTTCTCTTGAATGACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- TGGTATGCAACGTCAAAAAAGGGGATATGGTTTTTCTCTTGAATGACATC
CT0072225      <-- TGGTATGCAACGTCAAAAAAGGGGATATGGTTTTTCTCTTGAATGACATC
CT0034945      <-- .........................................AATGACATC
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> TGGTATGCAACGTCAAAAAAGGGGATATGGTTTTTCTCTTGAATGACATC

               901    -    951
RU22879        --> AGCAATTTTTTCCCACTGGTCAGGGGTTGGATCTATGCCAGTAGGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- AGCAATTa..........................................
CT0072225      <-- AGCAATTTTTTCCCACTGGTCAGGGGTTGGATCTATGCCAGTAGGATTGT
CT0034945      <-- AGCAATTTTTTCCCACTGGTCAGGGGTTGGATCTATGCCAGTAGGATTGT
CT0014568      <-- ..................................................
CT0060213      <-- ..................................................
ET0098549      <-- ..................................................
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> AGCAATTTTTTCCCACTGGTCAGGGGTTGGATCTATGCCAGTAGGATTGT

               951    -   1001
RU22879        --> GAGCACAGCCATGAAGCAACACAAAGGATCCTTCAGGTGCTGCCTTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- G.................................................
CT0034945      <-- GAGCACAGCCATGAAGCAACACAAAGGATCCTTCAGGTGCTGCCTTTATG
CT0014568      <-- .......................AAGGATCCTTCAGGTGCTGCCTTTATG
CT0060213      <-- .......................AAGGATCCTTCAGGTGCTGCCTTTATG
ET0098549      <-- .......................AAGGATCCTTCAGGTGCTGCCTTTATG
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> GAGCACAGCCATGAAGCAACACAAAGGATCCTTCAGGTGCTGCCTTTATG

               1001   -   1051
RU22879        --> TCCGCTATCATCCCCTCAAAGTCCAAACCAACTGTTTTTGGATCATAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- TCCGCTATCATCCCCTCAAAGTCCAAACCAACTGTTTTTGGATCATAGTA
CT0014568      <-- TCCGCTATCATCCCCTCAAAGTCCAAACCAACTGTTTTTGGATCATAGTA
CT0060213      <-- TCCGCTATCATCCCCTCAAAGTCCAAACCAACTGTTTTTGGATCATAGTA
ET0098549      <-- TCCGCTATCATCCCCTCAAAGTCCAAACCAACTGTTTTTGGATCATAGTA
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> TCCG..............................................

               1051   -   1101
RU22879        --> TCGGTACTCAGACCAGGGAACTCCAGCGTCATTAAAAATATTCTTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- TCGGTACTCAG.......................................
CT0014568      <-- TCGGTACTCAGACCAGGGAACTCCAGCGTCATTAAAAATATTCTTGTGAT
CT0060213      <-- TCGGTACTCAGACCAGGGAACTCCAGCGTCATTAAAAATATTCTTGTGAT
ET0098549      <-- TCGGTACTCAGACCAGGGAACTCCAGCGTCATTAAAAATATTCTTGTGAT
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               1101   -   1151
RU22879        --> TACCCCAGGTCGGAGATGATATTAAAGCTTTGGCTCCAGGAAAATATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ..................................................
CT0122738      <-- ..................................................
ET0050704      <-- ..................................................
ET0032556      <-- ..................................................
CT0093240      <-- ..................................................
CT0072225      <-- ..................................................
CT0034945      <-- ..................................................
CT0014568      <-- TACCCCAGGTCGGAGATGATATTAAAGCTTTGGCTCCAGGAAAATATCGT
CT0060213      <-- TACCCCAGGTCGGAGATGATATTAAAGCTTTGGCTCCAGGAAAATATCGT
ET0098549      <-- TACCCCAGGTCGGAGATGATATTAAAGCTTTGGCTCCAGGAAAATATCGT
CT0023861      --> ..................................................
RH02a15        --> ..................................................
RH03B168       --> ..................................................
RH06A66        --> ..................................................
CT0024317      --> ..................................................
CT0066802      --> ..................................................
CT0078304      --> ..................................................
ET0131886      --> ..................................................

               1151   -   1201
RU22879        --> TCTATAAAAGCTGCAGCAAGACGAAGAGAACCAGTTCCT-GAGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0113608      <-- ...............................................
CT0122738      <-- ...............................................
ET0050704      <-- ...............................................
ET0032556      <-- ...............................................
CT0093240      <-- ...............................................
CT0072225      <-- ...............................................
CT0034945      <-- ...............................................
CT0014568      <-- TCTATAAAAGCTGCAGCAAGACGAAGAGAACCAGTTCCTCGAGAGAC
CT0060213      <-- TCTATAAAAGCTGCAGCAAGACGAAGAGAACCAGTTCCT-GAGAGAC
ET0098549      <-- TCTATAAAAGCTGCAGCAAGACGAAGAGAACCAGTTCCT-GAGAGA.
CT0023861      --> ...............................................
RH02a15        --> ...............................................
RH03B168       --> ...............................................
RH06A66        --> ...............................................
CT0024317      --> ...............................................
CT0066802      --> ...............................................
CT0078304      --> ...............................................
ET0131886      --> ...............................................