1 - 51
RU23029 --> ACTAGGTCAATGGTAGGATTACGTGCAGCAACGGCAAGTGATAGGCATCC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ACTAGGTCAATGGTAGGATTACGTGCAGCAACGGCAAGTGATAGGCATCC
RH49BM41 <-- ACTAGGTCAATGGTAGGATTACGTGCAGCAACGGCAAGTGATAGGCATCC
CT0109623 --> .......................TGCAGCAACGGCAAGTGATAGGCATCC
CT0111587 --> .......................TGCAGCAACGGCAAGTGATAGGCATCC
CT0113196 --> .......................TGCAGCAACGGCAAGTGATAGGCATCC
RH03B152 --> ..................................................
RH06B163 --> ..................................................
51 - 101
RU23029 --> TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAGCAT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAACAT
RH49BM41 <-- TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAGCAT
CT0109623 --> TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAGCAT
CT0111587 --> TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAGCAT
CT0113196 --> TCCAAAAGAATCTCCTACCAAATAAATTGGCTTGTTGGGAGATGAAGCAT
RH03B152 --> ..................................................
RH06B163 --> ..................................................
101 - 151
RU23029 --> GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
RH49BM41 <-- GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
CT0109623 --> GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
CT0111587 --> GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
CT0113196 --> GCTCAACCCTAATAGTTTCTTCCACCAATTTCACCAGCCCTTCAAATGGT
RH03B152 --> ..................................................
RH06B163 --> ..................................................
151 - 201
RU23029 --> GTTCGATCATTCACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- GTTCGATCATTCACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG WaterDS
RH49BM41 <-- GTTCGATCATTCACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG WaterDS
CT0109623 --> GTTCGATCATTAACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG Control
CT0111587 --> GTTCGATCATTAACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG Control
CT0113196 --> GTTCGATCATTAACTGGAATATGCAAGCATCGAACTTCAAAGACCTTCTG Control
RH03B152 --> .................................................. WaterDS
RH06B163 --> .................................................. WaterDS
201 - 251
RU23029 --> AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGTACCATCTAACCCAG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGT..............
RH49BM41 <-- AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGT..............
CT0109623 --> AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGTACCATCTAACCCAG
CT0111587 --> AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGTACCATCTAACCCAG
CT0113196 --> AAGAGCTTTATGATGCAAAATGAGTCCGCACCCAGTACCATCTAACCCAG
RH03B152 --> ....................................ACCATCTAACCCAG
RH06B163 --> ....................................ACCATCTAACCCAG
251 - 301
RU23029 --> G-CAAAAA-CAAAAGAACTGGAGAATCCTTCAATGGAGGGTTGCGCGCAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> GACAAAAAACAAAAGAA.................................
CT0111587 --> G-CAAAAA-CAAA.....................................
CT0113196 --> G-CAAAAA-CAAA.....................................
RH03B152 --> G-CAAAAA-CAAAAGAACTGGAGAATCCTTCAATGGAGGGTTGCGCGCAA
RH06B163 --> G-CAAAAA-CAAAAGAACTGGAGAATCCTTCAATGGAGGGTTGCGCGCAA
301 - 351
RU23029 --> GGGGGCTAAACCATGGGGGAGGACCACCATCAGGCTTAATCATCTCCTCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> GGGGGCTAAACCATGGGGGAGGACCACCATCAGGCTTAATCATCTCCTCA
RH06B163 --> GGGGGCTAAACCATCGGGGAGGACCACCATCAGGCTTAATCATCTCCTCA
351 - 401
RU23029 --> GTTGCATCGAAATAATCCTTTACAGTCACAGTCCCATACCCATCATCCCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> GTTGCATCGAAATAATCCTTTACAGTCACAGTCCCATACCCATCATCCCA
RH06B163 --> GTTGCATCGAAATAATCCTTTACAGTCACAGTCCCATACCCATCATCCCA
401 - 451
RU23029 --> CAAAGGTTCCAAACTTTCGAGAACACCATCTTCTATCCTCTGTTTCTCCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> CAAAGGTTCCAAACTTTCGAGAACACCATCTTCTATCCTCTGTTTCTCCT
RH06B163 --> CAAAGGTTCCAAACTTTCGAGAACACCATCTTCTATCCTCTGTTTCTCCT
451 - 501
RU23029 --> TAACCTTATGCCTCAATCTCCCATTCCCTTGATCAACCAAAGGTCTACTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> TAACCTTATGCCTCAATCTCCCATTCCCTTGATCAACCAAAGGTCTACTT
RH06B163 --> TAACCTTATGCCTCAATCTCCCATTCCCTTGATCAACCAAAGGTCTACTT
501 - 551
RU23029 --> CCCTCCCTCTCCCCAACTACAGAAGCTCCATTCACTACAACCGAGTCTGA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> CCCTCCCTCTCCCCAACTACAGAAGCTCCATTCACTACAACCGAGTCTGA
RH06B163 --> CCCTCCCTCTCCCCAACTACAGAAGCTCCATTCACTACAACCGAGTCTGA
551 - 601
RU23029 --> GGGCAAAACTGGTGCATCCTGATTACCTGAACTCCTAACTTGCACTCGAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> GGGCAAAACTGGTGCATCCTGATTACCTGAACTCCTAACTTGCACTCGAA
RH06B163 --> GGGCAAAACTGGTGCATCCTGATTACCTGAACTCCTAACTTGCACTCGAA
601 - 651
RU23029 --> ACCGAGGCTTATTCTCAGAACTTAATGCAAAAAAGTGAAGTCCCCCAAAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> ACCGAGGCTTATTCTCAGAACTTAATGCAAAAAAGTGAAGTCCCCCAAAA
RH06B163 --> ACCGAGGCTTATTCTCAGAACTTAATGCAAAAAAGTGAAGTCCCCCAAAA
651 - 701
RU23029 --> CCTATAACTGATGCCATTTCTTCTGCAAACAACTACAGAAGATTGATTCT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ..................................................
RH49BM41 <-- ..................................................
CT0109623 --> ..................................................
CT0111587 --> ..................................................
CT0113196 --> ..................................................
RH03B152 --> CCTATAACTGATGCCATTTCTTCTGCAAACAACTACAGAAGATTGATTCT
RH06B163 --> CCTATAACTGATGCCATTTCTTCTGCAAACAACTACAGAAGATTGATTCT
701 - 751
RU23029 --> AGACCCTTTATTAACCAAGTGAGAAAC
~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH09E108 <-- ...........................
RH49BM41 <-- ...........................
CT0109623 --> ...........................
CT0111587 --> ...........................
CT0113196 --> ...........................
RH03B152 --> AGACCCTTTATTAACCAAGTGAGAAAC
RH06B163 --> AGACCCTTTATTAACCAAGTGAGAAAC
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