1 - 51
RU23259 --> CGACGCCATGGCCATGAATACAAACAGAGACGACGGCAAGAATCCGATAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> CGACGCCATGGCCATGAATACAAACAGAGACGACGGCAAGAATCCGATAA
RH43BK73 --> CGACGCCATGGCCATGAATACAAACAGAGACGACGGCAAGAATCCGATAA
CT0004697 --> ..................................................
CT0004719 --> ..................................................
51 - 101
RU23259 --> AAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> AAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCC
RH43BK73 --> AAATGTCAAAGAAGGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCC
CT0004697 --> .............GGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCC
CT0004719 --> .............GGGTAAATCATGCAAAGGCACCCTTTACTATTCCTCC
101 - 151
RU23259 --> GCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCAC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> GCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCAC
RH43BK73 --> GCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCAC
CT0004697 --> GCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCAC
CT0004719 --> GCCCTCCAATCCAAAGCCAAGAATCCTCGCTGCATCGGCATCCCCCGCAC
151 - 201
RU23259 --> CCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCTT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> CCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCCT WaterDS
RH43BK73 --> CCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCCT WaterDS
CT0004697 --> CCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCTT Control
CT0004719 --> CCTTCCTCAAGTGCCTAACTCAATAGTTGAAGAATCGAAGGCCGATGCTT Control
201 - 251
RU23259 --> CTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTAC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> CTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGT..
RH43BK73 --> CTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGT..
CT0004697 --> CTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTAC
CT0004719 --> CTAAAGATGAGCGACATCTTAAAGATTTTTATTATGCCTGTGCCGGGTAC
251 - 301
RU23259 --> TCGGTCTACTTGGATCAAATTGGAAAAG-GTCTTCCGGTGATAAGCGAAC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> ..................................................
RH43BK73 --> ..................................................
CT0004697 --> TCGGTCTACTTGGATCAAATTGGAAAAGAGTCTTCCGGTGATAAGCGAAC
CT0004719 --> TCGGTCTACTTGGATCAAATTGGAAAAG-GTCTTCCGGTGATAAGCGAAC
301 - 351
RU23259 --> GGCAAAAGATTGCCTGTTTG
~~~~~~~~~~~~~~~~~~~~
RH42BI37 --> ....................
RH43BK73 --> ....................
CT0004697 --> GGCAAAAGATTGCCTGTTTG
CT0004719 --> GGCAAAAGATTGCCTGTTTG
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