SNPs of unigene RU23304
               1      -     51
RU23304        --> ATATTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ATATTAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               51     -    101
RU23304        --> AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTAAGGAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTAAGGAGCGA
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               101    -    151
RU23304        --> GCCAGCTGCAAGTCTCCTTGTCAAATCCTCCACAGACACCTTCACAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- GCCAGCTGCAAGTCTCCTTGTCAAATCCTCCACAGACACCTTCACAACAT
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..............................actAGACACCTTCACAACAT
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               151    -    201
RU23304        --> CAATCCTCTTGCCAATGTCAGCACCGTACCTACTAGCACAGTATACTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- CAATCCTCTTGCCAATGTCAGCACCGTACCTACTAGCACAGTATACTCCA
CT0043641      <-- ............CAATGTCAGCACCGTACCTACTAGCACAGTATACTCCA
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> CAATCCTCTTGCCAATGTCAGCACCGTACCTACTAGCACAGTATACTCCA
RH11G112       --> ...........................ACCTACTAGCACAGTATACTCCA
RH52BU108      --> ...........................ACCTACTAGCACAGTATACTCCA
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               201    -    251
RU23304        --> ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
CT0043641      <-- ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
CT0041952      <-- ..GCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGA........
CT0087214      <-- ........AGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
CT0087769      <-- ........AGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
CT0088866      <-- ........AGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
RH11G112       --> ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
RH52BU108      --> ATGCCTACAGCTACCATCCCATAAATGTTGGTGGTGACAAGACGCAGCGG
CT0046243      --> .............................................AGCGG
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               251    -    301
RU23304        --> TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0043641      <-- TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0041952      <-- ..................................................
CT0087214      <-- TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0087769      <-- TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0088866      <-- TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
ET0009798      <-- ............................CCTATTATAGATGCTGCTTGAC
ET0012526      <-- ............................CCTATTATAGATGCTGCTTGAC
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
RH11G112       --> TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
RH52BU108      --> TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0046243      --> TGTTGCTAAAACGGCTGCAAGAGGTCCCCCTATTATAGATGCTGCTTGAC
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               301    -    351
RU23304        --> CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGT.......
CT0043641      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCA.
CT0041952      <-- ..................................................
CT0087214      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
CT0087769      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
CT0088866      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
ET0009798      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
ET0012526      <-- CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> CACTTTGCCCTAATGTTCTTTGATCCATA.....................
RH11G112       --> CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
RH52BU108      --> CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
CT0046243      --> CACTTTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
CT0036515      --> ....TTGCCCTAATGTTCTTTGATCCATAACAAGCAGCCCAGTTTTGCAA
ET0086759      --> ..............................CAAGCAGCCCAGTTTTGCAA
ET0113303      --> ..................................................

               351    -    401
RU23304        --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
CT0087769      <-- TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
CT0088866      <-- TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
ET0009798      <-- TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
ET0012526      <-- TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
RH52BU108      --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
CT0046243      --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
CT0036515      --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
ET0086759      --> TAAATAGCGAAGTCTTCACAATTGCTCTTAAATATGCAATAGCAACCAAA
ET0113303      --> ..................................................

               401    -    451
RU23304        --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCATCTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- GCCATTTTCAAGCAGGTATTTTGC..........................
CT0087769      <-- GCCATTTTCAAGCAGGTATTTTtgtc........................
CT0088866      <-- GCCATTTTCAAGCAGGTATTTTGC..........................
ET0009798      <-- GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCA.......
ET0012526      <-- GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCA.......
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCATCTGAGT
RH52BU108      --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCATCTGAGT
CT0046243      --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCATCTGAGT
CT0036515      --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGA..................
ET0086759      --> GCCATTTTCAAGCAGGTATTTTGCTCGATGGACCACAATATCATCTGAGT
ET0113303      --> ...........aattttagactacgaatggaACCACAATATCATCTGAGT

               451    -    501
RU23304        --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGGCTTTTGCCAGAAATAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ..................................................
RH57CA149      <-- ..................................................
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGGCTTTTGCCTGAAATAGG
RH52BU108      --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGGCTTTTGCCAGAAATAGG
CT0046243      --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGG.................
CT0036515      --> ..................................................
ET0086759      --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGGCTTTTGCCAGAAATAGG
ET0113303      --> CCGACACTGCAAGGGTGCACGTTCCTCCCCGGGCTTTTGCCAGAAATAGG

               501    -    551
RU23304        --> GCAGGGTTGACAGAATATTCAAAACGGTACAAGACACCCCCTGCAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ............................ACAAGACACCCCCTGCAAGAAA
RH57CA149      <-- ............................ACAAGACACCCCCTGCAAGAAA
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> GCAGGGTTGACAG.....................................
RH52BU108      --> GCAGGGTTGACAG.....................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> GCAGGGTTGACAGAATATTCAAAACGGTACAAGACACCCCCTGCAAGAAA
ET0113303      --> GCAGGGTTGACAGAATATTCAAAACGGTACAAGACACCCCCTGCAAGAAA

               551    -    601
RU23304        --> GCAGTTCAAGCACGAGCAGAGAACCCCACTGTTCTCTTCCCGTGGAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- GCAGTTCAAGCACGAGCAGAGAACCCCACTGTTCTCTTCCCGTGGAGTGC
RH57CA149      <-- GCAGTTCAAGCACGAGCAGAGAACCCCACTGTTCTCTTCCCGTGGAGTGC
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> GCAGTTCAAGCACGAGCAGA..............................
ET0113303      --> GCAGTTCAAGCACGAGCAGAGAACCCCACTGTTCTCTTCCCGTGGAGTGC

               601    -    651
RU23304        --> ACACTTCGCAGGGCTGTTGAGGTTGGACTGGTCCTGAGCTAACCAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ACACTTCGCAGGGCTGTTGAGGTTGGACTGGTCCTGAGCTAACCAAAAGA
RH57CA149      <-- ACACTTCGCAGGGCTGTTGAGGTTGGACTGGTCCTGAGCTAACCAAAAGA
ET0071708      <-- ..................................................
ET0082659      <-- ..................................................
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ACACTTCGCAGGGCTGTTGAGGTTGGACTGGTCCTGAGCTAACCAAAAGA

               651    -    701
RU23304        --> ACATCCAACACTGTCCCAGTTCCTACTTCTTGGCCACGTCTGGTGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- ACATCCAACACTGTCCCAGTTCCTACTTCTTGGCCACGTCTGGTGAAATG
RH57CA149      <-- ACATCCAACACTGTCCCAGTTCCTACTTCTTGGCCACGTCTGGTGAAATG
ET0071708      <-- ........................................TGGTGAAATG
ET0082659      <-- ........................................TGGTGAAATG
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ACATCCAACACTGT....................................

               701    -    751
RU23304        --> AATGACTTTGTCATCCCCAATATAGATGCCATGATGGGCATAGATGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- AATGACTTTGTCATCCCCAATATAGATGCCATGATGGGCATAGATGTAAG
RH57CA149      <-- AATGACTTTGTCATCCCCAATATAGATGCCATGATGGGCATAGATGTAAG
ET0071708      <-- AATGACTTTGTCATCCCCAATATAGATGCCATGATGGGCATAGATGTAAG
ET0082659      <-- AATGACTTTGTCATCCCCAATATAGATGCCATGATGGGCATAGATGTAAG
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               751    -    801
RU23304        --> CAGTCCTCCAAGAGTAGATGTGATCCCCTGGTTTGAGGCTTCCCTTAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- CAGTCCTCCAAGAGTAGATGTGATCCCCTGGTTTGAGGCTTCCCTTAGCC
RH57CA149      <-- CAGTCCTCCAAGAGTAGATGTGATCCCCTGGTTTGAGGCTTCCCTTAGCC
ET0071708      <-- CAGTCCTCCAAGAGTAGATGTGATCCCCTGGTTTGAGGCTTCCCTTAGCC
ET0082659      <-- CAGTCCTCCAAGAGTAGATGTGATCCCCTGGTTTGAGGCTTCCCTTAGCC
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               801    -    851
RU23304        --> ACTCTGTTGGAGAGCAGCCCCATATTGGTGTTGTTTCTTCCCCTTTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................  Ethylene
CT0043641      <-- ..................................................  Control
CT0041952      <-- ..................................................  Control
CT0087214      <-- ..................................................  Control
CT0087769      <-- ..................................................  Control
CT0088866      <-- ..................................................  Control
ET0009798      <-- ..................................................  Ethylene
ET0012526      <-- ..................................................  Ethylene
RH49BR125      <-- ACTCTGCTGGAGAGCAGCCCCATATTGGTGTTGTTTCTTCCCCTTTCTCA  WaterDS
RH57CA149      <-- ACTCTGCTGGAGAGCAGCCCCATATTGGTGTTGTTTCTTCCCCTTTCTCA  WaterDS
ET0071708      <-- ACTCTGTTGGAGAGCAGCCCCATATTGGTGTTGTTTCTTCCCCTTTCTCA  Ethylene
ET0082659      <-- ACTCTGTTGGAGAGCAGCCCCATATTGGTGTTGTTTCTTCCCCTTTCTCA  Ethylene
ET0132640      --> ..................................................  Ethylene
RH11G112       --> ..................................................  WaterDS
RH52BU108      --> ..................................................  WaterDS
CT0046243      --> ..................................................  Control
CT0036515      --> ..................................................  Control
ET0086759      --> ..................................................  Ethylene
ET0113303      --> ..................................................  Ethylene

               851    -    901
RU23304        --> GAAAAGCAAGATAGATATGAATTAATTCCTCTGGGAAAGGAGAATTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0148084      <-- ..................................................
CT0043641      <-- ..................................................
CT0041952      <-- ..................................................
CT0087214      <-- ..................................................
CT0087769      <-- ..................................................
CT0088866      <-- ..................................................
ET0009798      <-- ..................................................
ET0012526      <-- ..................................................
RH49BR125      <-- GGGAAGCAAGATAGATATGAATT...........................
RH57CA149      <-- GAAAAGCAAGATAGATATGAATT...........................
ET0071708      <-- GAAAAGCAAGATAGATATGAATTAA.........................
ET0082659      <-- GAAAAGCAAGATAGATATGAATTAATTCCTCTGGGAAAGGAGAATTGATT
ET0132640      --> ..................................................
RH11G112       --> ..................................................
RH52BU108      --> ..................................................
CT0046243      --> ..................................................
CT0036515      --> ..................................................
ET0086759      --> ..................................................
ET0113303      --> ..................................................

               901    -    951
RU23304        --> CCTGGAAAAGCAG
                   ~~~~~~~~~~~~~
ET0148084      <-- .............
CT0043641      <-- .............
CT0041952      <-- .............
CT0087214      <-- .............
CT0087769      <-- .............
CT0088866      <-- .............
ET0009798      <-- .............
ET0012526      <-- .............
RH49BR125      <-- .............
RH57CA149      <-- .............
ET0071708      <-- .............
ET0082659      <-- CCTGGAAAAGCAG
ET0132640      --> .............
RH11G112       --> .............
RH52BU108      --> .............
CT0046243      --> .............
CT0036515      --> .............
ET0086759      --> .............
ET0113303      --> .............