SNPs of unigene RU23815
               1      -     51
RU23815        --> ATATATATATATATATTTTACTAGCCAGAAACAAAATACACGAATGCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ATATATATATATATATTTTACTAGCCAGAAACAAAATACACGAATGCAAT
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               51     -    101
RU23815        --> ATCAAAGTTTGCATCTTTCTGTTCTGTGGTTCAATTTTTCCATTTCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ATCAAAGTTTGCATCTTTCTGTTCTGTGGTTCAATTTTTCCATTTCTTAG
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ............................GTTCAATTTTTCCATTTCTTAG
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               101    -    151
RU23815        --> GTGGTAGAGAGATTGAAACAGAGCAGACCCAAGATGAAGTTTTTGTGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- GTGGTAGAGAGATTGAAACAGAGCAGACCCAAGATGAAGTTTTTGTGGGT
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> GTGGTAGAGAGATTGAAACAGAGCAGACCCAAGATGAAGTTTTTGTGGGT
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               151    -    201
RU23815        --> TGGCATTGTTGTAGTGCTAGTTTTCACCAAATGGGCTAATGGGTTTGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- TGGCATTGTTGTAGTGCTAGTTTTCACCAAATGGGCTAATGGGTTTGCGG
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> TGGCATTGTTGTAGTGCTAGTTTTCACCAAATGGGCTAATGGGTTTGAGG
ET0029001      --> ...............................TGGGCTAATGGGTTTGCGG
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               201    -    251
RU23815        --> AGCATAGTTTTAATGAAACAGAGCTGTCCTGGTTGGAGGGCTATGGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- AGCATAGTTTTAATGAAACAGAGCTGTCCTGGTTGGAGGGCTATGGAG..
ET0137319      <-- ......................GCTGTCCTGGTTGGAGGGCTATGGAGAA
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> AGCATAGTTTTAATGAAACAGAGCTGTCCTGGTTGGAGGGCTATGGAGca
ET0029001      --> AGCATAGTTTTAATGAAACAGAGCTGTCCTGGTTGGAGGGCTATGGAGAA
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               251    -    301
RU23815        --> TCCAAGGCTGCTGTAACTGGGGTGATGGTAGGACTAACCCTTATTCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- TCCAAGGCTGCTGTAACTGGGGTGATGGTAGGACTAACCCTTATTCCAGG
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> atcacaagta........................................
ET0029001      --> TCCAAGGCTGCTGTAACTGGGGTGATGGTAGGACTAACCCTTATTCCAGG
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               301    -    351
RU23815        --> AGCTGGTGCCAAAGGAGCAGTCTGCCTGGATGGAACCCTACCCGGGTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- AGCTGGTGCCAAAGGAGCAGTCTGCCTGGATGGAACCCTACCCGGATATC
ET0073198      <-- ......................TGCCTGGATGGAACCTTACCCGGGTATC
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> AGCTGGTGCCAAAGGAGCAGTCTGCCTGGATGGAACCCTACCCGGATATC
ET0088016      --> ...........................................GGGTATC
ET0091250      --> ...........................................GGGTATC
ET0091499      --> ...........................................GGGTATC
ET0092016      --> ...........................................GGGTATC
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               351    -    401
RU23815        --> ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
ET0073198      <-- ATTTGCATCGTGGGTACGGGGTCAGGAGCAAATAGCTGGCTTATTCAATT
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ATTTGCA...........................................
ET0088016      --> ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
ET0091250      --> ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
ET0091499      --> ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
ET0092016      --> ATTTGCATCGTGGGTACGGG-TCAGGAGCAAATAGCTGGCTTATTCAATT
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               401    -    451
RU23815        --> GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
ET0073198      <-- GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
ET0091250      --> GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
ET0091499      --> GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
ET0092016      --> GGAGGGGGGAGGATGGTGTAACACCATTAGAAATTGTGTTTACCGCAAAA
CT0026060      --> ..................TAACACCATTAGAAATTGTGTTTACCGCAAAA
CT0086705      --> ...........................TAGAAATTGTGTTTACCGCAAAA
RH12I128       --> ...........................................CGCAAAA
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               451    -    501
RU23815        --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- CAACCAGGCGGGGATCATCAAAATTTta......................
ET0073198      <-- CAACAAGGCGGGGATCATCAAAATTTATGGAAAA-CAGTTGCTATTTACC
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
ET0091250      --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
ET0091499      --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
ET0092016      --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
CT0026060      --> CAACCAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
CT0086705      --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
RH12I128       --> CAACAAGGCGGGGATCATCAAAATTTATGGAAAAACAGTTGCTATTTACC
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               501    -    551
RU23815        --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTTTCAACTGGA
ET0121124      <-- ..................................ATTTTTT-CAACTGGA
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
ET0091250      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
ET0091499      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
ET0092016      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
CT0026060      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
CT0086705      --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
RH12I128       --> GGAATACTAAGCAATAAAGCTGAAGAAAATCCAGATTTTTT-CAACTGGA
CT0018395      --> ..............................CCAGATTTTTT-CAACTGGA
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               551    -    601
RU23815        --> ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ATAGAGTAAAGCTTCGCTATT.............................
ET0121124      <-- ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATAGT
ET0017216      <-- ..............................CTTCTTTTTCTGGGGATGGT
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ATAGAGTAAAGCTTCGCTATTGTG..........................
ET0091250      --> ATAGAGTAAAGCTTCGCTATTGTG..........................
ET0091499      --> ATAGAGTAAAGCTTCGCTATTGTG..........................
ET0092016      --> ATAGAGTAAAGCTTCGCTATTGTG..........................
CT0026060      --> ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATAGT
CT0086705      --> ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATGGT
RH12I128       --> ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATGGT
CT0018395      --> ATAGAGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATAGT
CT0083816      --> ....AGTAAAGCTTCGCTATTGTGATGGTGCTTCTTTTTCTGGGGATGGT
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               601    -    651
RU23815        --> GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
ET0017216      <-- GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
CT0086705      --> GAAAATA...........................................
RH12I128       --> GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
CT0018395      --> GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
CT0083816      --> GAAAATAAGGCAGCACAACTACAATTCAGAGGACAACGTATATGGTTGTC
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               651    -    701
RU23815        --> TGCAATGGAAGATTTGATGTCAAAGGGCATGCGCTATGCTAAGCAGGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- TGCAATGGAAGATTTGATGTCAAAGGGCATGCACTATGCTAAGCAGGCTC
ET0017216      <-- TGCAATGGAAGATTTGATGTCAAAGGGCATGCGCTATGCTAAGCAGGCTC
ET0077212      <-- ............TTTGATGTCAAAGGGCATGCACTATGCTAAGCAGGCTC
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> TGCAATGGAAGATTTGATGTCAAAGGG.......................
CT0086705      --> ..................................................
RH12I128       --> TGCAATGGAAGATTTGATGTCAAAGGGCATGCGCTATGCTAAGCAGGCTC
CT0018395      --> TGCAATGGAAGATTTGATGTCAAAGGGCATGCGCTATGCTAAGCAGGCTC
CT0083816      --> TGCAATGGAAGATTTGATGTCAAAGGGCATGCGCTATGCTAAGCAGGCTC
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               701    -    751
RU23815        --> TTCTTTCAGGTTGCTCTGCTGGCGGCCTGGCATCTATTTTGCACTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- TTCTTTCAGGTTGCTCTGCTGGCGGCCTGGCATCTATTTTGCACTGTGAT
ET0017216      <-- TTCTTTCAGGTTGCTCTGCTGGCGGCC.......................
ET0077212      <-- TTCTTTCAGGTTGCTCTGCTGGCGGCCTGGCATCTATTTTGCACTGTGAT
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> TTCTTTCAGGTTGCTCTGCTGGCGGCCTGGCATCTATTTTGCACTGCGAT
CT0018395      --> TTCTTTCAGGTTGCTCTGCTGGCGGCCTTGCATCTATTTTGCACTGCGAT
CT0083816      --> TTCTTTCAGGTTGCTCT.................................
CT0131240      --> ..CTTTCAGGTTGCTCTGCTGGCGGCCTGGCATCTATTTTGCACTGTGAT
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               751    -    801
RU23815        --> GAGTTCCGGGGCTTATTTT-CAAGAAGTACAAAAGTGAAGTGCCTAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- GAGTTCCGGGG.......................................
ET0017216      <-- ..................................................
ET0077212      <-- GAGTTCCGGGGCTTATTTT-CAAGAAGTACAAAAGTGAAGTGCCTAAGTG
CT0077127      <-- .......GGGGCTTATTTTTCAAGAAGTACAAAAGTGAAGTGCCTAAGTG
ET0003761      <-- ................................AAGTGAAGTGCCTAAGTG
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> GAGTTCCGGGGCTTATTTC-CAAGAAGT......................
CT0018395      --> GAGTTCCG..........................................
CT0083816      --> ..................................................
CT0131240      --> GAGTTCCGGGGCTTATTTT-CAAGAAGTACAAAAGTGAAGTGCCTAAGTG
RH53BZ29       --> ............................ACAAAAGTGAAGTGCCTAAGTG
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               801    -    851
RU23815        --> ATGCTGGATTGTTTCTTGATGCGGCTGATGTTTCTGGTGGACGCACACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ATGCTGGATTGTTTCTTGATGCGGCTGATGTTTCTGGTGGACGCACACTC
CT0077127      <-- AT................................................
ET0003761      <-- ATGCTGGATTGTTTCTTGATGCGGCTGATGTTTCTGGTGGACGCACACTC
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ATGCTGGATTGTTTCTTGATGCGGCTGATGTTTCTGGTGGACGCACACTC
RH53BZ29       --> ATGCTGGATTGTTTCTTGATGCGGCTGATGTTTCTGGTGGACGCACACTC
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               851    -    901
RU23815        --> AGGAATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG-CAACAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- AGGAATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG...........
CT0077127      <-- ..................................................
ET0003761      <-- AGGAATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG-CAACAAACTC
ET0040650      <-- ....ATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG-CAACAAACTC
ET0050272      <-- ....................TGTTGGCTTGCAGGGGGTGGCAACAAACTC
CT0067816      <-- ............................................AAACTC
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> AGGAATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG-CAACAAACTC
RH53BZ29       --> AGGAATTTATATGGTGGTGTTGTTGGCTTGCAGGGGGTG-CAACAAACTC
ET0089320      --> ..............................CAGGGGGTG-CAACAAACTC
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               901    -    951
RU23815        --> TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- TACCACGCATTTGTC...................................
ET0040650      <-- TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
ET0050272      <-- TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
CT0067816      <-- TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
ET0136461      <-- ................................................CT
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
RH53BZ29       --> TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
ET0089320      --> TACCACGCATTTGTCTTAACCATCTTGATCCTACATCGTGCTTCTTCCCT
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               951    -   1001
RU23815        --> CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAAT.....
ET0050272      <-- CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
CT0067816      <-- CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
ET0136461      <-- CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
ET0129656      <-- .................................gTTATACTCAATGCAGC
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
RH53BZ29       --> CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
ET0089320      --> CAGAACTTAATCAACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
ET0134204      --> ............AACAGCATTAAAACCCCACTGTTTATACTCAATGCAGC
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1001   -   1051
RU23815        --> ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
CT0067816      <-- ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
ET0136461      <-- ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
ET0129656      <-- ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ATA...............................................
RH53BZ29       --> ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
ET0089320      --> ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
ET0134204      --> ATATGATTCATGGCAGATCCAATCCAGTTTAGCTCCACCATCAGCAGATC
ET0039685      --> ..........................GTTTAGCTCCACCATCAGCAGATC
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1051   -   1101
RU23815        --> CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- CTCACGGTTACTGGAAGAACTGCAGATTAAA...................
CT0067816      <-- CTCACGGTTtact.....................................
ET0136461      <-- CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
ET0129656      <-- CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
CT0086125      <-- ....CGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
ET0089320      --> CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGTCGTTCCCC
ET0134204      --> CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAAAGT-GTTCCCC
ET0039685      --> CTCACGGTTACTGGAAGAACTGCAGATTAAATCATGCAA-GT-GTTCCCC
ET0085237      --> ....................................CAAAGT-GTTCCCC
ET0127728      --> ................................................CC
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1101   -   1151
RU23815        --> A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- A-AAACAGATTCAATATCTGCAAGGATT......................
ET0129656      <-- AAAAACAGATTCAATATCTGCAAGGATT......................
CT0086125      <-- A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTCAATGTA
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> A-AAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0089320      --> A-GAACAGATTa......................................
ET0134204      --> A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0039685      --> A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0085237      --> A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0127728      --> A-GAACAGATTCAATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0058273      --> ............AATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0063630      --> ............AATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
ET0086623      --> ............AATATCTGCAAGGATTCAGGAATCAAATGCTGAATGTA
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1151   -   1201
RU23815        --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGCTGTTTATAAATTCATG
ET0089320      --> ..................................................
ET0134204      --> GTGAAACAATTTGCGCAGTCTGATAAAA......................
ET0039685      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
ET0085237      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
ET0127728      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
ET0058273      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
ET0063630      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
ET0086623      --> GTGAAACAATTTGCGCAGTCTGATAAAAATGGGTTGTTTATAAATTCATG
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1201   -   1251
RU23815        --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- CTTTGCTCATTGCC....................................
CT0077561      <-- CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
CT0098747      <-- CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0092076      <-- ........ATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0129828      <-- ....................AGAGGCAGGATACAT-GGTTTGCTGACAAT
RH17P40        <-- ..................................................
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACATTGGTTTGCTGACAAT
ET0085237      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0127728      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0058273      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0063630      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
ET0086623      --> CTTTGCTCATTGCCAAAGTGAGAGGCAGGATACAT-GGTTTGCTGACAAT
CT0089010      --> ...........................GGATACAT-GGTTTGCTGACAAT
ET0068884      --> ..................................................
CT0136273      --> ..................................................
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1251   -   1301
RU23815        --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
CT0098747      <-- TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0092076      <-- TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0129828      <-- TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
RH17P40        <-- ..............................................GGTA
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> T.................................................
ET0085237      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0127728      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0058273      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTG...
ET0063630      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTG...
ET0086623      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTG...
CT0089010      --> TCTCCAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0068884      --> ....CAGTCATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
CT0136273      --> .........ATCAGAAACAAGGCAATTGCACTAGCTGTTGGGGATTGGTA
ET0083720      --> ..................................................
CT0063819      --> ..................................................
ET0009563      --> ..................................................
CT0095560      --> ..................................................
ET0089554      --> ..................................................

               1301   -   1351
RU23815        --> TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGCAGTTGATTGTCCATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................  Control
ET0137319      <-- ..................................................  Ethylene
ET0073198      <-- ..................................................  Ethylene
ET0121124      <-- ..................................................  Ethylene
ET0017216      <-- ..................................................  Ethylene
ET0077212      <-- ..................................................  Ethylene
CT0077127      <-- ..................................................  Control
ET0003761      <-- ..................................................  Ethylene
ET0040650      <-- ..................................................  Ethylene
ET0050272      <-- ..................................................  Ethylene
CT0067816      <-- ..................................................  Control
ET0136461      <-- ..................................................  Ethylene
ET0129656      <-- ..................................................  Ethylene
CT0086125      <-- ..................................................  Control
CT0077561      <-- TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Control
CT0098747      <-- TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Control
ET0092076      <-- TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Ethylene
ET0129828      <-- TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Ethylene
RH17P40        <-- TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGCAGTTGATTGTCCATACC  WaterDS
ET0085667      <-- ..................................................  Ethylene
ET0128382      --> ..................................................  Ethylene
ET0029001      --> ..................................................  Ethylene
ET0088016      --> ..................................................  Ethylene
ET0091250      --> ..................................................  Ethylene
ET0091499      --> ..................................................  Ethylene
ET0092016      --> ..................................................  Ethylene
CT0026060      --> ..................................................  Control
CT0086705      --> ..................................................  Control
RH12I128       --> ..................................................  WaterDS
CT0018395      --> ..................................................  Control
CT0083816      --> ..................................................  Control
CT0131240      --> ..................................................  Control
RH53BZ29       --> TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGCAGTTGATTGTCCATACC  WaterDS
ET0089320      --> ..................................................  Ethylene
ET0134204      --> ..................................................  Ethylene
ET0039685      --> ..................................................  Ethylene
ET0085237      --> TTTTGAACGAACCGGTGTTAAGGGTG........................  Ethylene
ET0127728      --> TTTTGAACGAACCGGTGTTAAGGGTGCTA.....................  Ethylene
ET0058273      --> ..................................................  Ethylene
ET0063630      --> ..................................................  Ethylene
ET0086623      --> ..................................................  Ethylene
CT0089010      --> TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Control
ET0068884      --> TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Ethylene
CT0136273      --> TTTTGAACGAACCGGTGTTAAGGGTGCTAAGGAAGTTGATTGTCCATACC  Control
ET0083720      --> ..................................GTTGATTGTCCATACC  Ethylene
CT0063819      --> ..................................................  Control
ET0009563      --> ..................................................  Ethylene
CT0095560      --> ..................................................  Control
ET0089554      --> ..................................................  Ethylene

               1351   -   1401
RU23815        --> CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACAAGCATAGAGTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................  Control
ET0137319      <-- ..................................................  Ethylene
ET0073198      <-- ..................................................  Ethylene
ET0121124      <-- ..................................................  Ethylene
ET0017216      <-- ..................................................  Ethylene
ET0077212      <-- ..................................................  Ethylene
CT0077127      <-- ..................................................  Control
ET0003761      <-- ..................................................  Ethylene
ET0040650      <-- ..................................................  Ethylene
ET0050272      <-- ..................................................  Ethylene
CT0067816      <-- ..................................................  Control
ET0136461      <-- ..................................................  Ethylene
ET0129656      <-- ..................................................  Ethylene
CT0086125      <-- ..................................................  Control
CT0077561      <-- CTTGTGACAACTCTTGCCACAATCTGGTCTT...................  Control
CT0098747      <-- CTTGTGACAACTCTTGCCACAATCTGGTCTT...................  Control
ET0092076      <-- CTTGTGACAACT......................................  Ethylene
ET0129828      <-- CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACAAGCATAGAGTAAT  Ethylene
RH17P40        <-- CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACGAGCATAGAGTAAT  WaterDS
ET0085667      <-- ..................................................  Ethylene
ET0128382      --> ..................................................  Ethylene
ET0029001      --> ..................................................  Ethylene
ET0088016      --> ..................................................  Ethylene
ET0091250      --> ..................................................  Ethylene
ET0091499      --> ..................................................  Ethylene
ET0092016      --> ..................................................  Ethylene
CT0026060      --> ..................................................  Control
CT0086705      --> ..................................................  Control
RH12I128       --> ..................................................  WaterDS
CT0018395      --> ..................................................  Control
CT0083816      --> ..................................................  Control
CT0131240      --> ..................................................  Control
RH53BZ29       --> CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACGAGCATAGAGTAAT  WaterDS
ET0089320      --> ..................................................  Ethylene
ET0134204      --> ..................................................  Ethylene
ET0039685      --> ..................................................  Ethylene
ET0085237      --> ..................................................  Ethylene
ET0127728      --> ..................................................  Ethylene
ET0058273      --> ..................................................  Ethylene
ET0063630      --> ..................................................  Ethylene
ET0086623      --> ..................................................  Ethylene
CT0089010      --> CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACAAGCATAGAGTAAT  Control
ET0068884      --> CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACAAGCATAGAGTAAT  Ethylene
CT0136273      --> CTTGTGACAACTCTTGCCACAATCTGGTCTTCCAACAAGCATAGAGTAAT  Control
ET0083720      --> CTTGTGACAACTCTTGCCATAATCTGGTCTTCCAAGAAGCATAGAGTAAT  Ethylene
CT0063819      --> .....GACAACTCTTGCCATAATCTGGTCTTCCAAGAAGCATAGAGTAAT  Control
ET0009563      --> ..................................................  Ethylene
CT0095560      --> ..................................................  Control
ET0089554      --> ..................................................  Ethylene

               1401   -   1451
RU23815        --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAATAGTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAA--AGTCTTG
RH17P40        <-- CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAATAGTCTTG
ET0085667      <-- ..................................................
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAATAGTCTTG
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAA--GTCTTG
ET0068884      --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAA--GTCTTG
CT0136273      --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAA--GTCTTG
ET0083720      --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAATAGTCTTG
CT0063819      --> CAGCTGGCTCTTTACATTTTAATAATTATTCCCCTTATGAAATAGTCTTG
ET0009563      --> ...................TAATAATTATTCCCCTTATGAAATAGTCTTG
CT0095560      --> ............................TTCCCCTTATGAAA--GTCTTG
ET0089554      --> ..................................................

               1451   -   1501
RU23815        --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- TAATTCAATTGAAATTGA................................
RH17P40        <-- TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
ET0085667      <-- ..........................AATAAA-CCTGAAGGCCTGCTGAG
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> TAATTCAATTG.......................................
ET0068884      --> TAATTCAATTGAAATTGATAGAAGACAATAAAACCTGAAGGCCTGCTGAG
CT0136273      --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
ET0083720      --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
CT0063819      --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
ET0009563      --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
CT0095560      --> TAATTCAATTGAAATTGATAGAAGACAATAAA-CCTGAAGGCCTGCTGAG
ET0089554      --> ..................................................

               1501   -   1551
RU23815        --> AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- AAGCGCAAATGTCATCAGCAA.............................
ET0085667      <-- AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> AAGTGCAAATGTCATCAGCAA.............................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> AAGTG.............................................
CT0136273      --> AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
ET0083720      --> AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
CT0063819      --> AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
ET0009563      --> AAGTGCAAATGTCATCAGCAAGCTCTTCATATTTTTAGGTACTAATGTAA
CT0095560      --> AAGTGCAAATGTCATCAGCAAGGTCTTCATATTTTTAGGTACTAATGTAA
ET0089554      --> ..............................................GTAA

               1551   -   1601
RU23815        --> TGTTTCCAATAAACTCATTCCTGTATGTAGTAATTCAGTAGCACATCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..................................................
ET0137319      <-- ..................................................
ET0073198      <-- ..................................................
ET0121124      <-- ..................................................
ET0017216      <-- ..................................................
ET0077212      <-- ..................................................
CT0077127      <-- ..................................................
ET0003761      <-- ..................................................
ET0040650      <-- ..................................................
ET0050272      <-- ..................................................
CT0067816      <-- ..................................................
ET0136461      <-- ..................................................
ET0129656      <-- ..................................................
CT0086125      <-- ..................................................
CT0077561      <-- ..................................................
CT0098747      <-- ..................................................
ET0092076      <-- ..................................................
ET0129828      <-- ..................................................
RH17P40        <-- ..................................................
ET0085667      <-- TGTTTCCAATAAACTCATTCCTGTATGTAGTAATTCAGTAGCACATCAAT
ET0128382      --> ..................................................
ET0029001      --> ..................................................
ET0088016      --> ..................................................
ET0091250      --> ..................................................
ET0091499      --> ..................................................
ET0092016      --> ..................................................
CT0026060      --> ..................................................
CT0086705      --> ..................................................
RH12I128       --> ..................................................
CT0018395      --> ..................................................
CT0083816      --> ..................................................
CT0131240      --> ..................................................
RH53BZ29       --> ..................................................
ET0089320      --> ..................................................
ET0134204      --> ..................................................
ET0039685      --> ..................................................
ET0085237      --> ..................................................
ET0127728      --> ..................................................
ET0058273      --> ..................................................
ET0063630      --> ..................................................
ET0086623      --> ..................................................
CT0089010      --> ..................................................
ET0068884      --> ..................................................
CT0136273      --> TGTTTCCAATAAACTCATTCCTGT..........................
ET0083720      --> TGTTTCCAATAAACTCATTCCTGTATtag.....................
CT0063819      --> TGTTTCCAATAAACTCATTCCTGTAT-TAGTAATTCAGTAGCACATa...
ET0009563      --> TGTTTCCAATAAACTCATTCCTGTAT-TAGTAATTCAGTAGCACATCAAT
CT0095560      --> TGTTTCCAATAAACTCATTCCTGTATGTAGTAATTCAGTAGCACATC...
ET0089554      --> TGTTTCCAATAAACTCATTCCTGTATGTAGTAATTCAGTAGCACATCAAT

               1601   -   1651
RU23815        --> GAAAATGTCTGCAACTCTTCATTGCAGCCGTTTCAATGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0038696      <-- ..........................................
ET0137319      <-- ..........................................
ET0073198      <-- ..........................................
ET0121124      <-- ..........................................
ET0017216      <-- ..........................................
ET0077212      <-- ..........................................
CT0077127      <-- ..........................................
ET0003761      <-- ..........................................
ET0040650      <-- ..........................................
ET0050272      <-- ..........................................
CT0067816      <-- ..........................................
ET0136461      <-- ..........................................
ET0129656      <-- ..........................................
CT0086125      <-- ..........................................
CT0077561      <-- ..........................................
CT0098747      <-- ..........................................
ET0092076      <-- ..........................................
ET0129828      <-- ..........................................
RH17P40        <-- ..........................................
ET0085667      <-- GAAAATGTCTGCAACTCTTCATTGCAGCCGTTTC........
ET0128382      --> ..........................................
ET0029001      --> ..........................................
ET0088016      --> ..........................................
ET0091250      --> ..........................................
ET0091499      --> ..........................................
ET0092016      --> ..........................................
CT0026060      --> ..........................................
CT0086705      --> ..........................................
RH12I128       --> ..........................................
CT0018395      --> ..........................................
CT0083816      --> ..........................................
CT0131240      --> ..........................................
RH53BZ29       --> ..........................................
ET0089320      --> ..........................................
ET0134204      --> ..........................................
ET0039685      --> ..........................................
ET0085237      --> ..........................................
ET0127728      --> ..........................................
ET0058273      --> ..........................................
ET0063630      --> ..........................................
ET0086623      --> ..........................................
CT0089010      --> ..........................................
ET0068884      --> ..........................................
CT0136273      --> ..........................................
ET0083720      --> ..........................................
CT0063819      --> ..........................................
ET0009563      --> GAAAATGTCTGCAACTCTTCATTGCAGCCGTTTCAATGTGGT
CT0095560      --> ..........................................
ET0089554      --> GAAAATGTCTGCAACTCTTCATTGCAGCCGTTT.........