Rose Transcriptome Database

SNPs of unigene RU23976
               1      -     51
RU23976        --> GTTTTTTTTCCCGGGGTTTTTTTAGGGTTTTTAGTTTTAGTTTTAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> GTTTTTTTTCCCGGGGTTTTTTTAGGGTTTTTAGTTTTAGTTTTAAAGTT
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               51     -    101
RU23976        --> TTGTTACTTATTTTCTAAGCAAGATCTACCAGGATTTAGTCGTTACCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ............................CCAGGATTTAGTCGTTACCACA
CT0039885      <-- ..............................................CACA
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> TTGTTACTTATTTTCTAAGCAAGATCTACCAGGATTTAGTCGTTACCACA
CT0075544      --> ..............................................CACA
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               101    -    151
RU23976        --> ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
CT0039885      <-- ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
ET0047997      <-- .......CTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
CT0064146      <-- ...................CAGAGGAGGCAATAGTCTCCAACTTTAGCGA
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
CT0075544      --> ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGA
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               151    -    201
RU23976        --> GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
CT0039885      <-- GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
ET0047997      <-- GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
CT0064146      <-- GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
CT0075544      --> GGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATG
CT0109289      --> .................................AGAAGAGAATAAAGATG
CT0112349      --> .................................AGAAGAGAATAAAGATG
CT0114457      --> .................................AGAAGAGAATAAAGATG
CT0118790      --> .........................................ATAAAGATG
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               201    -    251
RU23976        --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGG...
CT0039885      <-- GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
ET0047997      <-- GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0064146      <-- GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> GAGAAAAACGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0075544      --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0109289      --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0112349      --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0114457      --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0118790      --> GAGAAAA-CGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGG
CT0014374      --> ......................................CTGGCATGGTGG
ET0131162      --> .............................................GGTGG
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               251    -    301
RU23976        --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- CTCTG.............................................
ET0047997      <-- CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0064146      <-- CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
ET0131112      <-- ........................CTGTGCTTCCAATCAAGTGGCGCAAG
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> CTCTGCTTGGGACGCCTGGTTCAG..........................
CT0075544      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0109289      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0112349      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0114457      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0118790      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0014374      --> CTCTGCTTGGGACGCTTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
ET0131162      --> CTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAG
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               301    -    351
RU23976        --> TACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACTTTTATCCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- TACTATTGAac.......................................
CT0064146      <-- TACTATTGACACTTCCATACTCA...........................
ET0131112      <-- TACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACTTTTATCCGGT
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> TACTATTGACACTTCCATACTCta..........................
CT0109289      --> TACTATTGACACTTCCATACTCATTCTCT.....................
CT0112349      --> TACTATTGACACTTCCATACTCATTCTCT.....................
CT0114457      --> TACTATTGACACTTCCATACTCATTCTCT.....................
CT0118790      --> TACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACTTTTATCCGGT
CT0014374      --> TACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACGTTTATCCGGT
ET0131162      --> TACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACTTTTATCCGGT
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               351    -    401
RU23976        --> ATCTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ATCTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCT
CT0030762      <-- ..CTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCT
ET0100544      <-- ..............................GGAAGCTGGACGGCTTATCT
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ATCTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCT
CT0014374      --> ATCTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCT
ET0131162      --> ATCTTGCTTCAGCTGTTCTATGGGATCGT.....................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               401    -    451
RU23976        --> AATCAGTGTGCTCTATATTGAGTACCGGAGCAGGAAGGAGAAGGAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- AATCAGTGTGCTCTATATTGAGTACCGGAGCAGGAAGGAGAAGGAGAATG
CT0030762      <-- AATCAGTGTGCTCTATATTGAGTACCGGAGCAGGATGGAGAAGGAGAATG
ET0100544      <-- AATCAGTGTGCTCTATATTGAGTACCGGAGCAGGAAGGAGAAGGAGAATG
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> AATCAGTGTGCTCTATA.................................
CT0014374      --> AATCAGTGTGCTCTATATTGA.............................
ET0131162      --> ..................................................
CT0009760      --> ...........................GAGCAGGAAGGAGAAGGAGAATG
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               451    -    501
RU23976        --> TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTA
CT0030762      <-- TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTAATGGGTct
ET0100544      <-- TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTA
CT0063867      <-- TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTA
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> TTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTA
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               501    -    551
RU23976        --> CTTGGTCCTTACTGGAAAGCAGTGGGGCTTGGCTTCAACTGTACCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- CTTGGTCCTTACT.....................................
CT0030762      <-- tcttaac...........................................
ET0100544      <-- CTTGGTCCTTACTGGAAAGCAGTGGGGCTTGCCTTCAACTGTACTTTCCT
CT0063867      <-- CTTGGTCCTTACTGGAAAGCAGTGGGGCTTGGCTTCAACTGTACCTTCCT
CT0092944      <-- ..............................................cctT
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> CTTGGTCCTTACTGGAAAGCAGTGGGGCTTGGCTTCAACTGTACCTTCCT
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               551    -    601
RU23976        --> CCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCAACATATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- CCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCAACATATATT
CT0063867      <-- CCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCAACATATATT
CT0092944      <-- CCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCAACATATATT
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> CCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCtccaaagata
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               601    -    651
RU23976        --> ACATCAATGACAATTTGGACAAGAGGACTTGGACATATATCTTTGGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ACAatcaaatagaacaaa................................
CT0063867      <-- ACATCAATGACAATTTGGACAAGAGGACTTGGACATATATCTTTGGAGCT
CT0092944      <-- ACATCAATGACAATTTGGACAAGAGGACTTGGACATATATCTTTGGAGCT
CT0130125      <-- ...........................CTTGGACATATATCTTTGGAGCT
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> tat...............................................
ET0112441      --> .......................................gCTTTGGAGCT
ET0128528      --> ...............................................att
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               651    -    701
RU23976        --> TGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- TGCTGTGCCACTACAGTGTTCATACCTTCTTTC.................
CT0092944      <-- TGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTG
CT0130125      <-- TGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTG
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> TGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTG
ET0128528      --> aGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTG
CT0083803      --> ...................................TAACTATCGGATTTG
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               701    -    751
RU23976        --> GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
CT0130125      <-- GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
CT0020741      <-- ....................................CTGGTACATGACCA
CT0042901      <-- ....................................CTGGTACATGACCA
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
ET0128528      --> GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
CT0083803      --> GTCTTTCCTTGGACTTGGAATGACCACTTACACAGCCTGGTACATGACCA
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               751    -    801
RU23976        --> TAGCAGCTGCTGTTCATGGACAGGTTGAAGGTGTTACACACTCGGCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- TAGCAGCTGCTGTTCA..................................
CT0130125      <-- TAGCAGCTGCTGTTCATGGACAGGTTGCAGGTGTTACACACTCGGCTCCC
CT0020741      <-- TAGCAGCTGCTGTTCATGGACAGGTTGAAGGTGTTACACACTCGGCTCCC
CT0042901      <-- TAGCAGCTGCTGTTCATGGACAGGTTGATGGTGTTACACACTCGGCTCCC
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> TAGCAGCTGCTGTTCATGGACAGGTTGATGGTGTTACACACTCGGCTCCC
ET0128528      --> TAGCAGCTGCTGTTCATGGACAGGTTGAAGGTGTTACACACTCGGCTCCC
CT0083803      --> TAGCAGCTGCTGTTCATGGACAGGTTGAAGGTGTTACACACTCGGCTCCC
CT0136356      --> ........GCTGTTCATGGACAGGTTGATGGTGTTACACACTCGGCTCCC
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               801    -    851
RU23976        --> CAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- CATAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0020741      <-- CACAAGATGGTACTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0042901      <-- CAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> CAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
ET0128528      --> CAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0083803      --> CACAAGATGGTACTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0136356      --> CAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTT
CT0059385      --> .............................CACCAACATACTATACACCTT
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               851    -    901
RU23976        --> TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
CT0020741      <-- TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
CT0042901      <-- TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> TGGTGGCCATGCTGTTACAGT.............................
ET0128528      --> TGGTGGCCATGCTGTTACAGTGGAAATCATG...................
CT0083803      --> TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
CT0136356      --> TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
CT0059385      --> TGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCAC
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               901    -    951
RU23976        --> AAAAATTCAAGTACATTTACTTGTTTGCCACACTCTATGTTTTCACATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- AAAAATTCAAGTACATTTACTTGT..........................
CT0042901      <-- AAAAATTCAAGTACATTTACTTGTTTGCCACACTCTATGTTTTCACATTG
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> AAAAATTCAAGTACATTTACTTGTTTGCCACACTCTATGTTTTCACATTG
CT0059385      --> AAAAATTCAAGTACATTTACTTGTTTGCCACACTCTATGTTTTCACATTG
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               951    -   1001
RU23976        --> ACAATTCCTTCGGCTTCGGTCGTTTACTGGGCCTTCGGCG-ATGAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- AC................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ACAATTCCTTCGGCTTCGGTCGTTTACTGGGCCT-CGGCGGATGAGCTTC
CT0059385      --> ACAATTCCTTCGGCTTCGGTCGTTTACTGGGCCTTCGGCG-ATGAGCTTC
ET0010460      --> .....................tTTTACTGGGCCTTCGGCG-ATGAGCTTC
ET0027063      --> ......................TTTACTGGGCCTTCGGCG-ATGAGCTTC
ET0038684      --> ......................TTTACTGGGCCTTCGGCG-ATGAGCTTC
CT0051688      --> .........................ACTGGGCCTTCGGCG-ATGAGCTTC
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1001   -   1051
RU23976        --> T-CAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ............AACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
ET0017209      <-- ..........................................TGGCGTGA
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> TTCAACCATTC.......................................
CT0059385      --> T-CAACCATTCCAACaga................................
ET0010460      --> T-CAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
ET0027063      --> T-CAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
ET0038684      --> T-CAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
CT0051688      --> T-CAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGA
CT0135546      --> .............................CCCCAAGAATGCGTGGCGTGA
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1051   -   1101
RU23976        --> CGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................  Control
CT0039885      <-- ..................................................  Control
ET0047997      <-- ..................................................  Ethylene
CT0064146      <-- ..................................................  Control
ET0131112      <-- ..................................................  Ethylene
CT0030762      <-- ..................................................  Control
ET0100544      <-- ..................................................  Ethylene
CT0063867      <-- ..................................................  Control
CT0092944      <-- ..................................................  Control
CT0130125      <-- ..................................................  Control
CT0020741      <-- ..................................................  Control
CT0042901      <-- ..................................................  Control
CT0029277      <-- CGCTGCCGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Control
ET0017209      <-- CGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Ethylene
ET0089567      <-- .............................AGTTTATTACTTTTGGGTTTG  Ethylene
ET0068383      <-- ...................................TTACTTTTGGGTTTG  Ethylene
ET0139972      <-- .................................................t  Ethylene
RH39BH22       <-- ..................................................  WaterDS
ET0095830      <-- ..................................................  Ethylene
ET0060209      <-- ..................................................  Ethylene
ET0092090      <-- ..................................................  Ethylene
CT0084741      <-- ..................................................  Control
CT0044333      <-- ..................................................  Control
ET0005508      --> ..................................................  Ethylene
CT0075544      --> ..................................................  Control
CT0109289      --> ..................................................  Control
CT0112349      --> ..................................................  Control
CT0114457      --> ..................................................  Control
CT0118790      --> ..................................................  Control
CT0014374      --> ..................................................  Control
ET0131162      --> ..................................................  Ethylene
CT0009760      --> ..................................................  Control
ET0112441      --> ..................................................  Ethylene
ET0128528      --> ..................................................  Ethylene
CT0083803      --> ..................................................  Control
CT0136356      --> ..................................................  Control
CT0059385      --> ..................................................  Control
ET0010460      --> CGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Ethylene
ET0027063      --> CGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Ethylene
ET0038684      --> CGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Ethylene
CT0051688      --> CGCTGCCGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Control
CT0135546      --> CGCTGCCGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTG  Control
CT0026292      --> ........................................TTTGGGTTTG  Control
CT0072372      --> ..................................................  Control
ET0110530      --> ..................................................  Ethylene

               1101   -   1151
RU23976        --> CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
ET0017209      <-- CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
ET0089567      <-- CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
ET0068383      <-- CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
ET0139972      <-- CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
RH39BH22       <-- ...............ACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
ET0095830      <-- ...........................AGAAGGTGATCGGTATGCATGAC
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> CTTGCACACCA.......................................
ET0027063      --> CTTGCACACCAT......................................
ET0038684      --> CTTGCACACCAT......................................
CT0051688      --> CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCAT...
CT0135546      --> CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
CT0026292      --> CTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGAC
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1151   -   1201
RU23976        --> ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
ET0017209      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATTCC
ET0089567      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATTCC
ET0068383      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
ET0139972      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATTCC
RH39BH22       <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
ET0095830      <-- ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
CT0026292      --> ACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCC
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1201   -   1251
RU23976        --> AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCAATTAACTCTG
ET0017209      <-- AATTTGGTTCTTGG....................................
ET0089567      <-- AATTTGGTTCTTGGCTATTATCTTTCCGTTTTTCGGACCGATTAACTCTG
ET0068383      <-- AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTG
ET0139972      <-- AATTTGGTTCTTGGCTATTATCTTTCCGTTTTTCGGACCGATTAACTCTG
RH39BH22       <-- AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTG
ET0095830      <-- AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTG
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCAATTAACTCTG
CT0026292      --> AATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTG
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1251   -   1301
RU23976        --> CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- CGGTTGGG..........................................
ET0017209      <-- ..................................................
ET0089567      <-- CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCT.................
ET0068383      <-- CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
ET0139972      <-- CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
RH39BH22       <-- CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
ET0095830      <-- CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> CGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTG
CT0026292      --> CGGTTGGGGCTCTCTTGGTTAGTTTCACA.....................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1301   -   1351
RU23976        --> GCTCATATGCTCACATACAGAAAAGCATCTGCCAGACAGAATGCTGCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- GCTCATATGCTCACATACAGAAAAGC........................
ET0139972      <-- GCTCATATGCTCACAT..................................
RH39BH22       <-- GCACATATGCTCACATACAGAAAAGCATCTGCCAGACAGAATGCTGCGGA
ET0095830      <-- GCTCATATGCTCACATACAGAAAAGCATCTGCCAGACAGAATGCT.....
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> GCTCATATGCTCACATACAGAAAAGCAT......................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1351   -   1401
RU23976        --> GAAGCCACCATTCTTTTTACCAAGTTGGACAGCCATGTTTGTGATCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- GAAGCCACCATTCTTTTTACCAAGTTGGACAGCCATGTTTGTGATCAACT
ET0095830      <-- ..................................................
ET0060209      <-- ........................TTGGACAGCCATGTTTGTGATCAACT
ET0092090      <-- ........................TTGGACAGCCATGTTTGTGATCAACT
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1401   -   1451
RU23976        --> CCTTCATAGTTGTGTGGGTTCTGGTAATCGGGTTCGGGTTCGGTGGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- CCTTCATAGTTGTGTGGGTTCTGGTAATCGGGTTCGGGTTCGGTGGATGG
ET0095830      <-- ..................................................
ET0060209      <-- CCTTCATAGTTGTGTGGGTTCTGGTAATCGGGTTCGGGTTCGGTGGATGG
ET0092090      <-- CCTTCATAGTTGTGTGGGTTCTGGTAATCGGGTTCGGGTTCGGTGGATGG
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1451   -   1501
RU23976        --> GCTAGCATGACCAACTTTGTGAGGCAAGTGGACACATTTGGGCTGTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- GCTAGCATGACCAACTTTGTGAGGCAAGTGGACACATTTGGGCTGTTTGC
ET0095830      <-- ..................................................
ET0060209      <-- GCTAGCATGACCAACTTTGTGAGGCAAGTGGACACATTTGGGCTGTTTGC
ET0092090      <-- GCTAGCATGACCAACTTTGTGAGGCAAGTGGACACATTTGGGCTGTTTGC
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ..................................................

               1501   -   1551
RU23976        --> AAAGTGCTATCAATGCAAGCCTCCAAAGCCAGTAGTAGCAGCACC-AGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- AAAGTGCTATCAATGCAAGCCTCCAAAGCCAGTAGTAGCAGCACC-AGCC
ET0095830      <-- ..................................................
ET0060209      <-- AAAGTGCTATCAATGCAAGCCTCCAAAGCCAGTAGTAGCAGCACC-AGCC
ET0092090      <-- AAAGTGCTATCAATGCAAGCCTCCAAAGCCAGTAGTAGCAGCACC-AGCC
CT0084741      <-- ..................................................
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ......................CCAAAGCCAGTAGTAGCAGCACCCAGCC
ET0110530      --> ..................................................

               1551   -   1601
RU23976        --> CC-ACATAACTAAAAGTTCCATCACCCCAAAAGCTTGAAGATGAATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- CC-ACATAACTAAAAGTTCCATCACCCCAAAAGCTTGAAGATGAATCAAA
ET0095830      <-- ..................................................
ET0060209      <-- CC-ACA............................................
ET0092090      <-- CC-ACA............................................
CT0084741      <-- ........ctaAAAAGTTCCATCACCCCAAAAGCTTGAAGATGAATCAAA
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> CCCACATAACTAAAAGTTCCATCACCCCAAAAGCTTGAAGATGAATCAAA
ET0110530      --> ..................................................

               1601   -   1651
RU23976        --> TCCTCTAGCAGATCTGATTCCTCTTCATATTTTGTACCATACATGGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- T.................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- TCCTCTAGCAGATCTGATTCCTCTTCATATTTTGTACCATACATGGGGAA
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> TCCTCTAGCAGATCTGATTCCTCTTCATATTTTGTACCATACATGGGGAA
ET0110530      --> ..................................................

               1651   -   1701
RU23976        --> ATAGTAATATT-CGCCCCCCCCCCCCCCCCTACCATGTGATGTGTGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ATAGTAATATT-CGCCCCCCCCCCCCCCCCTACCATGTGATGTGTGTTGG
CT0044333      <-- ..................................................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ATAGTAATATTTCGCCCCCCCCCCCCC.......................
ET0110530      --> ..................................................

               1701   -   1751
RU23976        --> ATTTTTCTCTTTTTTATTTATTTTTCTATTTTTTAAAATTAGTTTATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- ATTTTTCTCTTTTTTATTTATTTTTCTATTTTTTAAAATTAGTTTATGAA
CT0044333      <-- ..................................AAAATTAGTTTTTGAA
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> ...............................................GAA

               1751   -   1801
RU23976        --> TAGTGTGTTGAGTTGTGTTGATGATTTCTTTTCCTATCACAGCATAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- TAGTGTGTTGAGTTGTGTTGATGATTTCTTTTCCTATCACAGCATAGTTT
CT0044333      <-- TAGTGTGTTGAGTTGTGTTGATGATTTCTTTTCCTATCACAGCATAGTTT
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> TAGTGTGTTGAGTTGTGTTGATGATTTCTTTTCCTATCACAGCATAGTTT

               1801   -   1851
RU23976        --> AATTAATTAAA-TGAAATATATATGTTTTTAGGTATTGTCTTTTTTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- ..................................................
CT0039885      <-- ..................................................
ET0047997      <-- ..................................................
CT0064146      <-- ..................................................
ET0131112      <-- ..................................................
CT0030762      <-- ..................................................
ET0100544      <-- ..................................................
CT0063867      <-- ..................................................
CT0092944      <-- ..................................................
CT0130125      <-- ..................................................
CT0020741      <-- ..................................................
CT0042901      <-- ..................................................
CT0029277      <-- ..................................................
ET0017209      <-- ..................................................
ET0089567      <-- ..................................................
ET0068383      <-- ..................................................
ET0139972      <-- ..................................................
RH39BH22       <-- ..................................................
ET0095830      <-- ..................................................
ET0060209      <-- ..................................................
ET0092090      <-- ..................................................
CT0084741      <-- AATTAATTAAAATGATATATATATa.........................
CT0044333      <-- AATTAATTAAA-TGAAATATATATGTTTTaggt.................
ET0005508      --> ..................................................
CT0075544      --> ..................................................
CT0109289      --> ..................................................
CT0112349      --> ..................................................
CT0114457      --> ..................................................
CT0118790      --> ..................................................
CT0014374      --> ..................................................
ET0131162      --> ..................................................
CT0009760      --> ..................................................
ET0112441      --> ..................................................
ET0128528      --> ..................................................
CT0083803      --> ..................................................
CT0136356      --> ..................................................
CT0059385      --> ..................................................
ET0010460      --> ..................................................
ET0027063      --> ..................................................
ET0038684      --> ..................................................
CT0051688      --> ..................................................
CT0135546      --> ..................................................
CT0026292      --> ..................................................
CT0072372      --> ..................................................
ET0110530      --> AATTAATTAAA-TGAAATATATATGTTTTTAGGTATTGTCTTTTTTTAAT

               1851   -   1901
RU23976        --> ATATATATAAATATGAAGTTCCAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0008866      <-- .............................
CT0039885      <-- .............................
ET0047997      <-- .............................
CT0064146      <-- .............................
ET0131112      <-- .............................
CT0030762      <-- .............................
ET0100544      <-- .............................
CT0063867      <-- .............................
CT0092944      <-- .............................
CT0130125      <-- .............................
CT0020741      <-- .............................
CT0042901      <-- .............................
CT0029277      <-- .............................
ET0017209      <-- .............................
ET0089567      <-- .............................
ET0068383      <-- .............................
ET0139972      <-- .............................
RH39BH22       <-- .............................
ET0095830      <-- .............................
ET0060209      <-- .............................
ET0092090      <-- .............................
CT0084741      <-- .............................
CT0044333      <-- .............................
ET0005508      --> .............................
CT0075544      --> .............................
CT0109289      --> .............................
CT0112349      --> .............................
CT0114457      --> .............................
CT0118790      --> .............................
CT0014374      --> .............................
ET0131162      --> .............................
CT0009760      --> .............................
ET0112441      --> .............................
ET0128528      --> .............................
CT0083803      --> .............................
CT0136356      --> .............................
CT0059385      --> .............................
ET0010460      --> .............................
ET0027063      --> .............................
ET0038684      --> .............................
CT0051688      --> .............................
CT0135546      --> .............................
CT0026292      --> .............................
CT0072372      --> .............................
ET0110530      --> ATATATATAAATATGAAGTTCCAGACTTT