SNPs of unigene RU24088
               1      -     51
RU24088        --> TTTTTTTTTGGAGAAGAAAATATAAGAATTGGTATTTCTCTGGTAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> TTTTTTTTTGGAGAAGAAAATATAAGAATTGGTATTTCTCTGGTAATTGT
CT0006794      --> .........GGAGAAGAAAATATAAGAATTGGTATTTCTCTGGTAATTGT
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               51     -    101
RU24088        --> ACAAAGCTTAAGGGCTTAATGAACAAGACGCAATAATTTTAACCCTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ACAAAGCTTAAGGGCTTAATGAACAAGACGCAATAATTTTAACCCTAATT
CT0006794      --> ACAAAGCTTAAGGGCTTAATGAACAAGACGCAATAATTTTAACCCTAATT
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               101    -    151
RU24088        --> TTGCAACTGGTAGTAACTTTATTTTTTTTTTTTTTTTTGATTAAGTAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ...........................TTTTTTTTTCTGATTAAGTAGGA
CT0129504      <-- ..............................TTTTTTTTGATTAAGTAGGA
CT0010722      <-- ...............................TTTTTCTGATTAAGTAGGA
CT0095090      <-- ....................................cTGATTAAGTAGGA
ET0006126      <-- ....................................cTGATTAAGTAGGA
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> TTGCAACTGGTAGTAACTTTATTTTTTTTTTTTTTTTTGATTAAGTAGGA
CT0006794      --> TTGCAACTGGTAGTAACTATTTTTTT........................
CT0069683      --> ............................TTTTTTTTCTGATTAAGTAGGA
ET0102455      --> .....................................TGATTAAGTAGGA
CT0058061      --> ......................................GATTAAGTAGGA
ET0019860      --> ......................................GATTAAGTAGGA
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               151    -    201
RU24088        --> ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGGCCATAAAG
CT0129504      <-- ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
CT0010722      <-- ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGGCCATAAAG
CT0095090      <-- ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGGCCATAAAG
ET0006126      <-- ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
CT0006794      --> ..................................................
CT0069683      --> ACAATGCATTAAAAAGGCAACAGCCCATAAAGGGTACAAGGGCCATAAAG
ET0102455      --> ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
CT0058061      --> ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
ET0019860      --> ACAATGCATTAAAA-GGCAACAGCCCATAAAGGGTACAAGGTCCATAAAG
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               201    -    251
RU24088        --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- GACAAGCTCC........................................
CT0129504      <-- ..................................................
CT0010722      <-- GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
CT0095090      <-- GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
ET0006126      <-- GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
ET0147164      <-- ........CCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
CT0006794      --> ..................................................
CT0069683      --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
ET0102455      --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
CT0058061      --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCT................
ET0019860      --> GACAAGCTCCCGAGGGAGTTACAAAAGCAGCCCTAAAACTAGGAAACGTA
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               251    -    301
RU24088        --> GAGTAACAAACCGAGGCCCAA-CACATAGGCCAACAACCGAGCCCAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- GAGTAACAAACCGAGGCCCAA-CACATAGGCCAAAAACCGAGCCCAGTCC
CT0095090      <-- GAGTAACAAACCGAGGCCCAA-CACATAGGCCAAAAACCGAGCCCAGTCC
ET0006126      <-- GAG...............................................
ET0147164      <-- GAGTAACAAACCGAGGCCCAA-CACATAGGCCAACAACCGAGCCCAGTCC
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> GAGTAACAAACCGAGGCCCAAACACATAGGCCAACAACCGAGCCCAGTCC
CT0006794      --> ..................................................
CT0069683      --> GAGTAACAAACCGAGGCCCAA-CACATAGGCCAAAAACCGAGCCCAGTCC
ET0102455      --> GAGTAACAAACCGAGGCCCAA-CACATAGGCCAACAACCGAGCCCAGTCC
CT0058061      --> ..................................................
ET0019860      --> GAGTAACAAACCGAGGCCCAA-CACATAGGCCAACAACCGAGCCCAGTCC
CT0018466      --> ................................................CC
CT0031883      --> ................................................CC
CT0042018      --> ................................................CC
CT0076705      --> ...............................................cct
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               301    -    351
RU24088        --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ATGTCCACCAAGTCGAATCAAGAACCAAC.....................
CT0095090      <-- ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGAC.
ET0006126      <-- ..................................................
ET0147164      <-- ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ATGTCCACCA........................................
CT0006794      --> ..................................................
CT0069683      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
ET0102455      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0058061      --> ..................................................
ET0019860      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0018466      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0031883      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0042018      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
CT0076705      --> ATGTCCACCAAGTCGAATCAAGAACCAACCGCCGCCCAACTCTGCCGACA
ET0129928      --> ...............................................ACA
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               351    -    401
RU24088        --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................  Control
CT0129504      <-- ..................................................  Control
CT0010722      <-- ..................................................  Control
CT0095090      <-- ..................................................  Control
ET0006126      <-- ..................................................  Ethylene
ET0147164      <-- GCAACGGAGAAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Ethylene
CT0050342      <-- ..................................................  Control
CT0024781      <-- ..................................................  Control
ET0049058      <-- ..................................................  Ethylene
CT0004616      <-- ..................................................  Control
CT0017081      <-- ..................................................  Control
ET0053574      --> ..................................................  Ethylene
CT0006794      --> ..................................................  Control
CT0069683      --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Control
ET0102455      --> GCAACGGAGAAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Ethylene
CT0058061      --> ..................................................  Control
ET0019860      --> GCAACGGAGAAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Ethylene
CT0018466      --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Control
CT0031883      --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Control
CT0042018      --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Control
CT0076705      --> GCAACGGAGCAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Control
ET0129928      --> GCAACGGAGAAAGGCAGCAACCAAAATCTGCAAGAATGATTCATTTGTCG  Ethylene
CT0027118      --> ..................................................  Control
ET0063943      --> ..................................................  Ethylene
CT0081445      --> ..................................................  Control
ET0102746      --> ..................................................  Ethylene

               401    -    451
RU24088        --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> AAA...............................................
ET0102455      --> AAATCG............................................
CT0058061      --> ..................................................
ET0019860      --> AAATCG............................................
CT0018466      --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
CT0031883      --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
CT0042018      --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
CT0076705      --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
ET0129928      --> AAATCGAGCCTCCGAAGATCTCTGGTAAGCAAATCTAGATCTCCATCTCT
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               451    -    501
RU24088        --> GTACCCCCATAAACGTAAATCGACAGAAGGTCTCCCAGAAGGAGGTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- GTACCCCCATAAACGTAAATCGACAGAAGGTCTCCCAGAAGGAGGTCGAA
CT0050342      <-- ...........AACGTAAATCGACAGAAGGTCTCCCAGAAGGAGGTCGAA
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> GTACCCCCATAAACGTAAATCGA...........................
CT0031883      --> GTACCCCCATAAACGTAAATCGA...........................
CT0042018      --> GTACCCCCATAAACGTAAATCGA...........................
CT0076705      --> GTACCCCCATAAACGTA.................................
ET0129928      --> GTACCCCCATAAACGTAAATCGACAGAAGGTCTCCCAGAAGGAGGTCGAA
CT0027118      --> ........agAAACGTAAATCGACAGAAGGTCTCCCAGAAGGAGGTCGAA
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               501    -    551
RU24088        --> CCGAGAGGCTCAACCTGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- CCGAGAGGCTCAACCTGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTG..
CT0050342      <-- CCGAGAGGCTCAACCTGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTGCT
CT0024781      <-- ...............TGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTGCT
ET0049058      <-- ..................................................
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> CCGAGAGGCTCAACCTGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTGCT
CT0027118      --> CCGAGAAGCTCAACCTGAGTTCTCGTCGTCGAGGTTCCCGCCGAAGTGCT
ET0063943      --> .................................................T
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               551    -    601
RU24088        --> CCGTGAAAGAGACTCGGAACGAGCTAGCAGCCAAGTATTCTTCCTTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- CCGTGAAAGAGATTCGGAACGAGCTAGCAGCCAAATATTCTTCCTTGTCC
CT0024781      <-- CCGTGAAAGAGACTCGGAACGAGCTAGCAGCCAAGTATTCTTCCTTGTCC
ET0049058      <-- ......AAGAGACTCGGAACGAGCTAGCAGCCAAGTATTCTTCCTTGTCC
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> CCGTGAAAGAGATTCGGAA...............................
CT0027118      --> CCGTGAAAGAGACTCGGAACGAGCTAGCAGCCAAGTATTCTTCCTTGTCC
ET0063943      --> CCGTGAAAGAGACTCGGAACGAGCTAGCAGCCAAGTATTCTTCCTTGTCC
CT0081445      --> ................................AAGTATTCTTCCTTGTCC
ET0102746      --> .............................................gtTCC

               601    -    651
RU24088        --> CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAAAGAGAAAGTTTGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAAAGAGAAAGTTTGC..
CT0024781      <-- CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAA-GAGAAAGTTTGCAC
ET0049058      <-- CAAAAGGGGGGAAGGCTGCCAACGGAGA-GGAAAAAGAGAAAGTTTGCAC
CT0004616      <-- ..................................................
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAAAGAGAAAGTTTGCAC
ET0063943      --> CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAAAGAGAAAGTTTGCAC
CT0081445      --> CAAAAGGGGGAAAG-CTGCCAACGGAGAAGGAAAA-GAGAAAGTTTGCAC
ET0102746      --> CAAAAGGGGGGAAG-CTGCCAACGGAGAAGGAAAAAGAGAAAGTTTGCAC

               651    -    701
RU24088        --> CC-ATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- CC-ATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA
ET0049058      <-- CCCATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA
CT0004616      <-- ...................................CAAACAAAGAGGAAA
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> CC-ATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA
ET0063943      --> CC-ATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA
CT0081445      --> CC-ATTCACCAAGAGAAACGATCTCACCAAGAAACCAAACAAAGAGGAAA
ET0102746      --> CC-ATTCACCAAGAGAAACGATCTCGCCAAGAAACCAAACAAAGAGGAAA

               701    -    751
RU24088        --> A-GAAAAACAAA-GGTGAGGGAGGTGTAGGGATGACCATGGAAGGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- A-GAAAAACAAA-G....................................
ET0049058      <-- A-GAAAAACAAA-GGTGAGGGAGGTGTAGGGATGACCATGGAAGGAGAGC
CT0004616      <-- A-GAAAAACAAAAGGTGAGGGAGGTGTAGGGATGACCATGGAAGGAGAGC
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> A-GAAAAACAAA-GGTGAGGGAGGTGTAGGGATGACCATGGAAGG.....
ET0063943      --> A-G...............................................
CT0081445      --> A-GAAAAACAAA-GGTGAGGGAGGTGTAGGGATGACCATGGAAGGAGAGC
ET0102746      --> AAGAAAAACAAA-GGTGAGGGAGGTGTAGGGATGACCATGGAAGGAGAGC

               751    -    801
RU24088        --> AGTAAGGATCTTGGCCACATTGTTGGAAGATTCAAACTGAATGGAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- AGTAAGGAT.........................................
CT0004616      <-- AGTAAGGATCTTGGCCACATTGTTGGAAGATTCAAACTGAATGGAAGAGC
CT0017081      <-- ..................................................
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> AGTAAGGATCTTGGCCACATTGTTGGAAGATTCAAACTGAATGGAAGAGC
ET0102746      --> AGTAAGGATCTTGGCCACATTGTTGGAAGATTCAAACTGAATGGAAGAGC

               801    -    851
RU24088        --> TGAGCTAAAACCAGAGAA-CTAAAACACA-GG--AAAAA--GGGGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- TGAGCTAAAACCAGAGAA-CTAAAACACA-GG--AAAAAACGGGAAAAGC
CT0017081      <-- ..AGCTAAAACCAGAGAA-CTAAAACACA-GG--AAAAA--GGGGAAAGC
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> TGAGCTAAAACCAGAGAA-CTAAAACACA-GGGAAAAAA-GGGGGAAAGC
ET0102746      --> TGAGCTAAAACCAGAGAAACTAAAACACAAGG--AAAAA-ACGGGAAAGC

               851    -    901
RU24088        --> AGGGACAGAGCCCGGACAGAGGAGCCGCCCCCAACTCTTAAACCTTCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- AGGGACAGAGCCCGGACAGAGGAGCCGCCCCCAACTCTCAAACCTTCGAT
CT0017081      <-- AGGGACAGAGCCCGGACAGAGGAGCCGCCCCCAACTCTTAAACCTTCGAT
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> AGGGACAGAGCCCGGA-AGAGG............................
ET0102746      --> AGGGACAGAGCCCGGA..................................

               901    -    951
RU24088        --> CTGGATCCAGAGGGATCTAGATCTGAGCTAGAGAGGAGGGGGAGGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................................................
CT0129504      <-- ..................................................
CT0010722      <-- ..................................................
CT0095090      <-- ..................................................
ET0006126      <-- ..................................................
ET0147164      <-- ..................................................
CT0050342      <-- ..................................................
CT0024781      <-- ..................................................
ET0049058      <-- ..................................................
CT0004616      <-- CTAGATCCAGAGGGATCTAGATCTGAGCTAGAGAGGAGGGGGAGGGAAAA
CT0017081      <-- CTGGATCCAGAGGGATCTAGATCTGAGCTAGAGAGGAGGGGGAGGGAAAA
ET0053574      --> ..................................................
CT0006794      --> ..................................................
CT0069683      --> ..................................................
ET0102455      --> ..................................................
CT0058061      --> ..................................................
ET0019860      --> ..................................................
CT0018466      --> ..................................................
CT0031883      --> ..................................................
CT0042018      --> ..................................................
CT0076705      --> ..................................................
ET0129928      --> ..................................................
CT0027118      --> ..................................................
ET0063943      --> ..................................................
CT0081445      --> ..................................................
ET0102746      --> ..................................................

               951    -   1001
RU24088        --> CGGGTTTCAGATCTGTTC
                   ~~~~~~~~~~~~~~~~~~
CT0014390      <-- ..................
CT0129504      <-- ..................
CT0010722      <-- ..................
CT0095090      <-- ..................
ET0006126      <-- ..................
ET0147164      <-- ..................
CT0050342      <-- ..................
CT0024781      <-- ..................
ET0049058      <-- ..................
CT0004616      <-- CGGGTTTC..........
CT0017081      <-- CGGGTTTCAGATCTGTTC
ET0053574      --> ..................
CT0006794      --> ..................
CT0069683      --> ..................
ET0102455      --> ..................
CT0058061      --> ..................
ET0019860      --> ..................
CT0018466      --> ..................
CT0031883      --> ..................
CT0042018      --> ..................
CT0076705      --> ..................
ET0129928      --> ..................
CT0027118      --> ..................
ET0063943      --> ..................
CT0081445      --> ..................
ET0102746      --> ..................