SNPs of unigene RU24190
               1      -     51
RU24190        --> TTTTTTTTTGAGGTCTATAGATGAAGCATCAATGCACTATAAAATTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- TTTTTTTTTGAGGTCTATAGATGAAGCATCAATGCACTATAAAATTTCCC
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ......................GAAGCATCAATGCACTATAAAATTTCCC
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               51     -    101
RU24190        --> AACATCTTTGTGCTGCAAGCACAATCTGTTTTTCATAAACATAAAACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- AACATCTTTGTGCTGCAAGCACAATCTGTTTTTCATAAACATAAAACATT
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> AACATCTTTGTGCTGCAAGCACAATCTGTTTTTCATAAACATAAAACATT
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               101    -    151
RU24190        --> ACTTAATTATACAATTGTGCTAAAGAGCTCGGAAAACAAACATAGGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ACTTAATTATACAATTGTGCTAAAGAGCTCGGAAAACAAACATAGGCCAT
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ACTTAATTATACAATTGTGCTAAAGAGCTCGGAAAACAAACATAGGCCAT
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               151    -    201
RU24190        --> ATGTACAATAATCAATTTTGATTTTCCCACCCAGAAATTCTGGCCCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ATGTACAATAATCAATTTTGATTTTCCCACCCAGAAATTCTGG.......
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ATGTACAATAATCAATTTTGATTTTCCCACCCAGAAATTCTGGCCCATTT
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               201    -    251
RU24190        --> ATATTTCTATGTGCAATTATTAACCTGTACAAGAAGCTGTCCAAGCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ATATTTCTATGTGCAATTATTAACCTGTACAAGAAGCTGTCCAAGCTCTA
RH26AB348      --> ............................ACAAGAAGCTGTCCAAGCTCTA
RH36AJ40       --> ............................ACAAGAAGCTGTCCAAGCTCTA
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               251    -    301
RU24190        --> GACAAAACAGTATCCTTTTTTAACAAAGCTTCGAGCCTTCAACCTATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..............................................TTCT
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> GACAAAACAGct......................................
RH26AB348      --> GACAAAACAGTATCCTTTTTTAACAAAGCTTCGAGCCTTCAACCTATTCT
RH36AJ40       --> GACAAAACAGTATCCTTTTTTAACAAAGCTTCGAGCCTTCAACCTATTCT
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               301    -    351
RU24190        --> GGTCGAAAGTTTACAAGATTAGGGAGGGCAGCAAACTGTAGCTTCCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- GGTCGAAAGCTTACAAGATTAGG-AGGGCAGCAAACTGTAAATTCCTGAT
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> GGTCGAAAGTTTACAAGATTAGGGAGGGCAGCAAACTGTAGCTTCCTGAT
RH36AJ40       --> GGTCGAAAGTTTACAAGATTAGGGAGGGCAGCAAACTGTAGCTTCCTGAT
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               351    -    401
RU24190        --> TTCAGATGCAGTCACCTTACTGGACTCCAAGGTTAAGGAACGTAGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- TTCAGATGCAGTCACCTTACTGGACTCCAAGGTTAAGGAACGTAGATTCT
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> TTCAGATGCAGTCACCTTACTGGACTCCAAGGTTAAGGAACGTAGATTCT
RH36AJ40       --> TTCAGATGCAGTCACCTTACTGGACTCCAAGGTTAAGGAACGTAGATTCT
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               401    -    451
RU24190        --> TCAAAGGCTTTAAATACTGCAATCCCTCATTGGTAATGCGTGAATTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- TCAAAGGCTTTAAATACTGCAATCCCTCATTGGTAATGCGTGAATTTGAA
ET0004446      <-- ...........................................ATTTGAA
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> TCAAAGGCTTTAAATACTGCAATCCCTCATTGGTAATGCGTGAATTTGAA
RH36AJ40       --> TCAAAGGCTTTAAATACTGCAATCCCTCATTGGTAATGCGTGAATTTGAA
ET0098559      --> ................................GTAATGCGTGAATTTGAA
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               451    -    501
RU24190        --> ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
ET0004446      <-- ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
RH36AJ40       --> ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
ET0098559      --> ATGTTTAATGACACCAATGCAGTCAAACCAGAAATCACTTCCAAGGATTT
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               501    -    551
RU24190        --> ATCAGTCAAGTTGCAGTTCTGCGACAGGTTTAGCCATGTCAGACAGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ATCAGTCAAGTTGCAGTTCTGCGACAAATTTAGCCAT.............
ET0004446      <-- ATCAGTCAAGTTGCAGTTCTGCGACAAATTTAGCCATGTCAGACAGACAA
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> ATCAGTCAAGTTGCAGTTCTGCGACAGGTTTAGCCATGTCAGACAGACAA
RH36AJ40       --> ATCAGTCAAGTTGCAGTTCTGCGACAGGTTTAGCCATGTCAGACAGACAA
ET0098559      --> ATCAGTCAAGTTGCAGTTCTGCGACAAATTTAGCCATGTCAGACAGACAA
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               551    -    601
RU24190        --> GATCTTTGAGATTCTTCACACCAGCATCAGTCAATCCTCCACCACATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- GATCTTTGAGATTCTTCACACCAGCATCAGTCAATCCTCCACCACATATT
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> GATCTTTGAGATTCTTCACACCAGCATCAGTCAATCCTCCACCACATATT
RH36AJ40       --> GATCTTTGAGATTCTTCACACCAGCATCAGTCAATCCTCCACCACATATT
ET0098559      --> GATCTTTGAGATTCTTCACACCAGCATCAGTCAATCCTCCACCACATATT
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               601    -    651
RU24190        --> TCAAGAGATTGAAGGTTCTTGAAGTGTTTTAAAGAGTTT-GCTCCAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- TCAAGAGATTGAAGGTTCTTGAAGTGTTT.....................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> TCAAGAGATTGAAGGTTCTTGAAGTGTTTTAAAGAGTTT-GCTCCAGAGT
RH36AJ40       --> TCAAGAGATTGAAGGTTCTTGAAGTGTTTTAAAGAGTTT-GCTCCAGAGT
ET0098559      --> TCAAGAGATTGAAGGTTCTTGAAGTGTTTTAAAGAGTTTTGCTCCAGAGT
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               651    -    701
RU24190        --> CTGAAATCCGAGCGCCAAAGAGATCCAGATGTGTCAATTTTGTAAGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> CTGAAATCCGAGCGCCAAAGAGATCCAGATGTGTCAATTTTGTAAGACCT
RH36AJ40       --> CTGAAATCCGAGCGCCAAAGAGATCCAGATGTGTCAATTTTGTAAGACCT
ET0098559      --> CTGAAATCCGAG......................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               701    -    751
RU24190        --> GTAATAGCTGCAAGTCCAGCATCAGTAATTTGGCGAGCATCCAGATTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ............................TTTGGCGAGCATCCAGATTAAG
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> GTAATAGCTGCAAGTCCAGCATCAGTAATTTGGCGAGCATCCAGATTAAG
RH36AJ40       --> GTAATAGCTGCAAGTCCAGCATCAGTAATTTGGCGAGCATCCAGATTAAG
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               751    -    801
RU24190        --> TGATTTGAGAGATGTCAGTCCAGATAACTTTTTCAGACTACCGTCAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- TGATTTGAGAGATGTCAGTCCAGATAACTTTTTCAGACTACCGTCAGTTA
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> TGATTTGAGAGATGTCAGTCCAGATAACTTTTTCAGACTACCGTCAGTTA
RH36AJ40       --> TGATTTGAGAGATGTCAGTCCAGATAACTTTTTCAGACTACCGTCAGTTA
ET0098559      --> ..................................................
CT0112259      --> TGATTTGAGAGATGTCAGTCCAGATAACTTTTTCAGACTACCGTCAGTTA
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               801    -    851
RU24190        --> CCAGGGTGAACGACAAGTTT-AAGTTCTCCAGATTCTTT-AACCCTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................  Ethylene
CT0057718      <-- ..................................................  Control
ET0004446      <-- ..................................................  Ethylene
CT0035965      <-- CCAGGGTGAATGACAAGTTT-AAATTCTCCAGATTCTTT-AACCCTGAGA  Control
CT0118925      <-- ..................................................  Control
CT0105612      <-- ..................................................  Control
CT0021085      <-- ..................................................  Control
ET0052120      --> ..................................................  Ethylene
RH26AB348      --> CCACGGTGAACGACAAGTTT-AAGTTCTCCAGATTCTTT-AACCCTGAGA  WaterDS
RH36AJ40       --> CCACGGTGAACGACAAGTTT-AAGTTCTCCAGATTCTTT-AACCCTGAAA  WaterDS
ET0098559      --> ..................................................  Ethylene
CT0112259      --> CCAGGGTGAATGACAAGTTT-AAATTCTCCAGATTCTTT-AACCCTGAGA  Control
CT0125560      --> ..........tGACAAGTTT-AAATTCTCCAGATTCTTT-AACCCTGAGA  Control
CT0125630      --> ..........tGACAAGTTT-AAATTCTCCAGATTCTTT-AACCCTGAGA  Control
CT0126439      --> .........ttGACAAGTTTTAAATTCTCCAGATTCTTTTAACCCTGAGA  Control
CT0126604      --> ..........tGACAAGTTT-AAATTCTCCAGATTCTTT-AACCCTGAGA  Control

               851    -    901
RU24190        --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAAT..
CT0118925      <-- ..................................................
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
RH36AJ40       --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAAat.
ET0098559      --> ..................................................
CT0112259      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
CT0125560      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
CT0125630      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
CT0126439      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC
CT0126604      --> GATGACGAATCCCATTGCTTCCAACTTCAGTATCAGATAACTCCAAATTC

               901    -    951
RU24190        --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCACCTATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- .........................................ACCTATCTT
CT0105612      <-- ..................................................
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> TTCAAGAGT.........................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCACCTATCTT
CT0125560      --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCGCCTATCTT
CT0125630      --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCGCCTATCTT
CT0126439      --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCGCCTATCTT
CT0126604      --> TTCAAGAGTACAGACCCTGCCAAGCTTGCAAGCCCCTCGTCGCCTATCTT

               951    -   1001
RU24190        --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
CT0105612      <-- ........CCAGGTTCAAGCTCTCCAAAACTTTAGTCAAACCTTTTAGAT
CT0021085      <-- ..................................................
ET0052120      --> ..................................................
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
CT0125560      --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
CT0125630      --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
CT0126439      --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTT-GTCAAACCTTTTAGAT
CT0126604      --> ACAAGAATCCAGGTTCAAGCTCTCCAAA--TTTTGTCAAACCTTTTAGAT

               1001   -   1051
RU24190        --> GCACCAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCT-CAAAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- GCACCAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCT-CAAAACCT
CT0105612      <-- GCAACAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCT-CAAAACCT
CT0021085      <-- ........................TGTTGAA-TCCCAAGCT-CAAAACCT
ET0052120      --> ..................................................
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> G.................................................
CT0125560      --> GCACCAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCTACAAAACCT
CT0125630      --> GCACCAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCT-CAAAACCT
CT0126439      --> GCACCAAACATGCATCTGTGATACTGTTGAA-TCCCAAGCTACAAAACCT
CT0126604      --> GCACCAAACATGCATCTGTGATACTGTTGAACTCCCAAGCTACAAAACCT

               1051   -   1101
RU24190        --> TCAAGTTTGTAAGGCCAGAAAACTTATCACATCCTTCATCAGATAAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- TCAAGTTTGTAAGGCCAGAAAACTTATCACATCCTTCATCAGATAAACTG
CT0105612      <-- TCAAGTTTGTAAGGCCAGAAAACTTATCACATCCTTCATCAGATAAACTG
CT0021085      <-- TCAAGTTTGTAAGGCCAGAAAACTTATCACATCCTTCATCAGATAAACTG
ET0052120      --> ..................................................
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> TCAAGTTTGTAAcgg...................................
CT0125630      --> TCAAGTTTGTAAcg....................................
CT0126439      --> TCAAGTTTGTAAc.....................................
CT0126604      --> TCAAGTTTGTAAc.....................................

               1101   -   1151
RU24190        --> CATCTGTTGAGATTTAAGTAAGCCAGGGCAACAAGAGCTGAAATAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ..................................................
CT0057718      <-- ..................................................
ET0004446      <-- ..................................................
CT0035965      <-- ..................................................
CT0118925      <-- CATCTGTTGAGATTTAAGTAAGCCAGGGCAACAA................
CT0105612      <-- CATCTGTTGAGATTTAAGTAAGCCAGGGCAACAAGAGCTGAAATAGATTC
CT0021085      <-- CATCTGTTGAGATTTAAGTAAGCCAGGGCAACAAGAGCTGAAATAGATTC
ET0052120      --> ..................................................
RH26AB348      --> ..................................................
RH36AJ40       --> ..................................................
ET0098559      --> ..................................................
CT0112259      --> ..................................................
CT0125560      --> ..................................................
CT0125630      --> ..................................................
CT0126439      --> ..................................................
CT0126604      --> ..................................................

               1151   -   1201
RU24190        --> CAAACATGCAGAAGTAACATTGCATCCCTCTAAGTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0110005      <-- ........................................
CT0057718      <-- ........................................
ET0004446      <-- ........................................
CT0035965      <-- ........................................
CT0118925      <-- ........................................
CT0105612      <-- CAAACATGCAGAAGTAACATTGCATCCCTCTAAGTTCAAC
CT0021085      <-- CAAACATGCAGAAGTAACATTGCATCCCTCTA........
ET0052120      --> ........................................
RH26AB348      --> ........................................
RH36AJ40       --> ........................................
ET0098559      --> ........................................
CT0112259      --> ........................................
CT0125560      --> ........................................
CT0125630      --> ........................................
CT0126439      --> ........................................
CT0126604      --> ........................................