SNPs of unigene RU24254
               1      -     51
RU24254        --> ACTAAACCAATCGTGCTTGGGTTTTGAAGATAATCGTCCTAGATCAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ACTAAACCAATCGTGCTTGGGTTTTGAAGATAATCGTCCTAGATCAACTA
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               51     -    101
RU24254        --> GAAAACAGAAGAAGTGTTGCTGGGTTTCGGATTTCAGTGATTGAAGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> GAAAACAGAAGAAGTGTTGCTGGGTTTCGGATTTCAGTGATTGAAGTTTT
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               101    -    151
RU24254        --> CAGTATTGTGGACTGGAGTATGTCCCTGTTTTTGCTTTGTTGATTGGAtt
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> CAGTATTGTGGACTGGAGTATGTCCCTGTTTTTGCTTTGTTGATTGGA..
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               151    -    201
RU24254        --> ttgccgcatccagcatcgacttaattagtttcattagtatcatattaact
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               201    -    251
RU24254        --> cccgcagcaaagcgcgggaaactgtatctagtaaactcgatacagcagca
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               251    -    301
RU24254        --> gcagcgtcgtctccagattctaaaagtgtcacaaagctcactactttgaa
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               301    -    351
RU24254        --> ggactgacaatgaagttgtttgaggtcaatggaagcactctctctcttgc
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               351    -    401
RU24254        --> tctcttcattgaagtcaccaattccaaggaactgcttgattctatgcaag
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               401    -    451
RU24254        --> ctgcgacattagagccggaagttgcatttctgaatgcgtcacttatccca
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               451    -    501
RU24254        --> gatgttttcccattgcttgcagctgcacataagacacttaTATCCAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ........................................TATCCAAGTC
CT0058362      --> ........................................TATCCAAGTC
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               501    -    551
RU24254        --> CCGAGACTCACTGACAACACGCACTCTTCATTCTGAGCTTGTTTATAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ................................CTGAGCTTGTTTATAACT
CT0110803      <-- .....................................CTTGTTTATAACT
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> CCGAGACTCACTGACAACACGCACTCTTCATTCTGAGCTTGTTTATAACT
CT0058362      --> CCGAGACTCACTGACAACACGCACTCTTCATTCTGAGCTTGTTTATAACT
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               551    -    601
RU24254        --> ACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGCATCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGCATCTCC
CT0110803      <-- ACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGCATCTCC
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGCATCTCC
CT0058362      --> ACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGCATCTCC
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               601    -    651
RU24254        --> GAGAGTTCAACTTATGTGCTTGCTGCCCGTTTCAATGCTACTTCTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- GAGAGTTCAACTTATGTGCTTGCTGCCCGTTTCAATGCTACTTCTGATGA
CT0110803      <-- GAGAGTTCAACTTATGTGCTTGCTGCTCGTTTCAATGCTACTTCTGATGA
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> GAGAGTTCAACTTATGTGCTTGCTGCCCGTTTCAATGCTACTTCTGATGA
CT0058362      --> GAGAGTTCAACTTATGTGCTTGCTGCCCGTTTCAATGCTACTTCTGATGA
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               651    -    701
RU24254        --> GATAGAACAGAAAGCAATAGAGAAACTTGTCAATGGAAAAGAGATTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- GATAGAACAGAAAGCAATAGAGAAACTTGTCAATGGAAAAGAGATTGATT
CT0110803      <-- GATAGAACAGAAAGCAATAGAGAAACTTGTCAATGGAAAAGAGATTGATT
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> GATAGAACAGAAAGCAATAGAGAAACTTGTCAA.................
CT0058362      --> GATAGAACAGAAAGCAATAGAGAAACTTGTCAA.................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               701    -    751
RU24254        --> TGGAGGAGCTGGGAGGGAGGGCTGACCAAGCCCAGATACAGAAGCATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- TGGAGGAGCTGGGAGGGAGGGCTGACCAAGCCCAGATGCAGAAGCATTAT
CT0110803      <-- TGGAGGAGCTGGGAGGGAGAGCTGACCAAGCCCAGATACAGAAGCATTAT
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ........................ACCAAGCCCAGATACAGAAGCATTAT
ET0053071      --> ...........................................GCATTAT
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               751    -    801
RU24254        --> AAGATAACTAGCCAGGAGTTAGGGATATCCTCACTTGCTGATGCTATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- AAG...............................................
CT0110803      <-- AAGATAACTA........................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- ..................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> AAGATAACTAGCCAGGAGTTAGGGATATCCTCACTTGCTGATGCTATTAC
ET0053071      --> AAGATAACTAGCCAGGAGTTAGGGATATCCTCACTTGCTGATGCTATTAC
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> ..................................................

               801    -    851
RU24254        --> ATGCCGGATTGCTGCTCGTGATGCCTTGTGAGAAGAAAGCATTGTAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................  Ethylene
CT0110803      <-- ..................................................  Control
CT0096325      <-- ..........................gtTGAGAAGAAAGCATTGCAACTT  Control
CT0096671      <-- ..........................gtTGAGAAGAAAGCATTGCAACTT  Control
CT0097239      <-- ............................TGAGAAGAAAGCATTGCAACTT  Control
CT0097459      <-- ..........................gtTGAGAAGAAAGCATTGCAACTT  Control
CT0098255      <-- ..........................gtTGAGAAGAAAGCATTGCAACTT  Control
CT0097539      <-- ..............................gagAGAAAGCATTGCAACTT  Control
CT0097497      <-- ..................................aAAAGCATTGCAACTT  Control
CT0097566      <-- ...................................AAAGCATTGCAACTT  Control
CT0097633      <-- ...................................AAAGCATTGCAACTT  Control
CT0097943      <-- ...................................AAAGCATTGCAACTT  Control
CT0127528      <-- ...................................AAAGCATTGCAACTT  Control
CT0127519      <-- ..................................................  Control
CT0097296      <-- ..................................................  Control
CT0047067      <-- ..................................................  Control
ET0083245      --> ..................................................  Ethylene
CT0044498      --> ..................................................  Control
CT0058362      --> ..................................................  Control
ET0118802      --> ATGCCGGATTGCTGCTCGTGATGCCTTGTGAGAAGAAAGCATTGTAACTT  Ethylene
ET0053071      --> ATGCCGGATTGCTGCTCGTGATGCCTTGTGAGAAGAAAGCATTGTAACTT  Ethylene
CT0052256      --> ..................................................  Control
CT0053370      --> ..................................................  Control
ET0023305      --> ..................................................  Ethylene

               851    -    901
RU24254        --> GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0096671      <-- GTTTTGATGTTCTGGG-TA-TTGAGGG-TTACAATTAGGTGGCCAAGGGA
CT0097239      <-- GTTTTGATGTTCTGGGGTA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097459      <-- GTTTTGATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0098255      <-- GTTTTGATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097539      <-- GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097497      <-- GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097566      <-- GTTTTGATGTTCTGGG-TA-TTGAGGGGT-ACAATTAGGTGGCCAAGGGA
CT0097633      <-- GTTTTGATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097943      <-- GTTT-GATGTTCTGGG-TAGTTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0127528      <-- GTTT-GATGTTCTGGG-TA-TTGAGGG-TTACAATTAGGTGGCCAAGGGA
CT0127519      <-- .TTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0097296      <-- .......................AGGG-T-ACAATTAGGTGGCCAAGGGA
CT0047067      <-- ................................AATTAGGTGGCCAAGGGA
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
ET0053071      --> GTTT-GATGTTCTGGG-TA-TTGAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0052256      --> ......................GAGGG-T-ACAATTAGGTGGCCAAGGGA
CT0053370      --> ......................gagggtaacaAATTAGGTGGCCAAGGGA
ET0023305      --> ..................................................

               901    -    951
RU24254        --> ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0096671      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0097239      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0097459      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0098255      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0097539      <-- ACAGAATAGTGGAGGATTTTCACT-GTTTTTTGATTAGCAAATT-GAACC
CT0097497      <-- -CAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATTTGAACC
CT0097566      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0097633      <-- ACAGAATAGTGGAGGATTTTCACT-GTTTTTTGATTAGCAAATT-GAACC
CT0097943      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0127528      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0127519      <-- ACAGAATAGTGGAGGATTTTCACT-GTTTTTTGATTAGCAAATT-GAACC
CT0097296      <-- ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0047067      <-- ACAGAAAAGTGGAGGATTT-CACT-GTTTTTTGATTAGCAAATT-GAACC
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ACAGAAAAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
ET0053071      --> ACAGAA-AGTGGAGGATTT-CACTTGTTTTT-GATTAGCAAATT-GAACC
CT0052256      --> ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
CT0053370      --> ACAGAATAGTGGAGGATTT-CACT-GTTTTT-GATTAGCAAATT-GAACC
ET0023305      --> .........................GTTTTT-GATTAGCAAATT-GAACC

               951    -   1001
RU24254        --> GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0096671      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTTTAAATT
CT0097239      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0097459      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0098255      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0097539      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0097497      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0097566      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0097633      <-- GTCTGCTGGTGTTTGGAGTAATTTTTCAGCAAAGCTGGAATTTT-AAATT
CT0097943      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0127528      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0127519      <-- GTCTGCTGGTGTTTGGAGTAATTTTTCAGCAAAGCTGGAATTTT-AAATT
CT0097296      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0047067      <-- GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> GTCTGCTGGTGTTTGGAGTAATTTT.........................
ET0053071      --> GTCTGCTGGTG.......................................
CT0052256      --> GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
CT0053370      --> GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT
ET0023305      --> GTCTGCTGGTGTTTGGAGTAATTTT-CAGCAAAGCTGGAATTTT-AAATT

               1001   -   1051
RU24254        --> -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0096671      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097239      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097459      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0098255      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097539      <-- TGCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097497      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097566      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097633      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097943      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0127528      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0127519      <-- TGCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0097296      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0047067      <-- -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
CT0053370      --> -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT
ET0023305      --> -GCGAGGCTATAGCCTATAGACCCTGTAATGAAACTATGCAATATTACCT

               1051   -   1101
RU24254        --> TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCATCACTGATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCtacct.......
CT0096671      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAcc.........
CT0097239      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0097459      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0098255      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0097539      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAcc.........
CT0097497      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0097566      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0097633      <-- TAAATTGTGAGGCTGAGAAGAGTTAATCCCACCTTATCtaccaaaaaaaa
CT0097943      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAcc.........
CT0127528      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAcc.........
CT0127519      <-- TAAATTGTGAGGCTGAG.................................
CT0097296      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCAccaaaaaaaaa
CT0047067      <-- TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCATCACTGAT...
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCATC.........
CT0053370      --> TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCATac........
ET0023305      --> TAAATTGTGAGGCTGAGAAGAGT-AATCCCACCTTATCATCACTGATATT

               1101   -   1151
RU24254        --> TCTTAGCGATACTGTTAGACTTAAATTTACTCAATTTTTCAAGAGATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ET0018827      <-- ..................................................
CT0110803      <-- ..................................................
CT0096325      <-- ..................................................
CT0096671      <-- ..................................................
CT0097239      <-- ..................................................
CT0097459      <-- ..................................................
CT0098255      <-- ..................................................
CT0097539      <-- ..................................................
CT0097497      <-- ..................................................
CT0097566      <-- ..................................................
CT0097633      <-- a.................................................
CT0097943      <-- ..................................................
CT0127528      <-- ..................................................
CT0127519      <-- ..................................................
CT0097296      <-- ..................................................
CT0047067      <-- ..................................................
ET0083245      --> ..................................................
CT0044498      --> ..................................................
CT0058362      --> ..................................................
ET0118802      --> ..................................................
ET0053071      --> ..................................................
CT0052256      --> ..................................................
CT0053370      --> ..................................................
ET0023305      --> TCTTAGCGATACTGTTAGACTTAAATTTACTCAATTTTTCAAGAGATGTG

               1151   -   1201
RU24254        --> TTAAAAAAAAA
                   ~~~~~~~~~~~
ET0018827      <-- ...........
CT0110803      <-- ...........
CT0096325      <-- ...........
CT0096671      <-- ...........
CT0097239      <-- ...........
CT0097459      <-- ...........
CT0098255      <-- ...........
CT0097539      <-- ...........
CT0097497      <-- ...........
CT0097566      <-- ...........
CT0097633      <-- ...........
CT0097943      <-- ...........
CT0127528      <-- ...........
CT0127519      <-- ...........
CT0097296      <-- ...........
CT0047067      <-- ...........
ET0083245      --> ...........
CT0044498      --> ...........
CT0058362      --> ...........
ET0118802      --> ...........
ET0053071      --> ...........
CT0052256      --> ...........
CT0053370      --> ...........
ET0023305      --> TTAAAAAAAAA