1 - 51
RU24412 --> AACTTTGATATGTACTGGGACCATTAGCATATGGAAATCAAATCTCTAGC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- AACTTTGATATGTACTGGGACCAAGAGCATATGGAAATCAAATCTCTAGC
CT0064964 <-- .............................................CTAGC
CT0132172 --> ............................tTATGGAAATCAAATCTCTAGC
CT0060388 --> ...............................TGGAAATCAAATCTCTAGC
CT0119505 --> ........................tttttttTGGAAATCAAATCTCTAGC
RH39BD1 --> ...............................TGGAAATCAAATCTCTAGC
RH39BF82 --> ...............................TGGAAATCAAATCTCTAGC
CT0050585 --> ................................GGAAATCAAATCTCTAGC
CT0040994 --> .....................tttttttttggtaaatTCAAATCTCTAGC
51 - 101
RU24412 --> TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0064964 <-- TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0132172 --> TGTCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0060388 --> TGTCATATGAATCTCTGTACAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0119505 --> TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
RH39BD1 --> TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
RH39BF82 --> TATCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0050585 --> TGTCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
CT0040994 --> TGTCATATGAATCTCTGTATAAGAATACAAGTTACAGAACTAAAGAAGAG
101 - 151
RU24412 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACA--GTGGGTTG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
CT0064964 <-- GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACA--GTGGGTTA
CT0132172 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
CT0060388 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
CT0119505 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
RH39BD1 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
RH39BF82 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
CT0050585 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
CT0040994 --> GCTGGAGGAGATGAGAATGAGTTACAAATCAACCCAGACATAGTGGGTTG
151 - 201
RU24412 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGAAGCAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGAA.... Control
CT0064964 <-- AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGAAGCAA Control
CT0132172 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAAATGAAGCAA Control
CT0060388 --> AGGCTGA........................................... Control
CT0119505 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGAAGCAA Control
RH39BD1 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGGAGCAA WaterDS
RH39BF82 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-TGGAGCAA WaterDS
CT0050585 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAAA-T....... Control
CT0040994 --> AGGCTGAAGAATCAAATGGATTTGAATGGGATTTTAAAAA.......... Control
201 - 251
RU24412 --> AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAA-TTGCCAACCA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- ..................................................
CT0064964 <-- AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAAATTGCCAACCA
CT0132172 --> AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAA-TTGCCAACCA
CT0060388 --> ..................................................
CT0119505 --> AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAA-TTGCCAACCA
RH39BD1 --> AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAA-TTGCCAACCA
RH39BF82 --> AAATTTCCTAAAAACACTAACCAATAACCAATAATTGAA-TTGCCAACCA
CT0050585 --> ..................................................
CT0040994 --> ..................................................
251 - 301
RU24412 --> ATCCAACCCCAACAAA-TTTTTCTTCCAACACCCTCGTCACCCATTCGAT
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- ..................................................
CT0064964 <-- ATCCAACCCCAACAAAATTTTTCTTCCAACACCCTCGTCACCCA......
CT0132172 --> ATCCAACCCCAACAAA-TTTTTCTTCCAACACCCTCGTCACCCATTCGAT
CT0060388 --> ..................................................
CT0119505 --> ATCCAACCCCAACAAA-TTTTTCT-CCAACACCCTCGTCACCCATTCG..
RH39BD1 --> ATCCAACCCCAACAAA-TTTTTCTTCCAACACCCTCGTCACCCATTCGAT
RH39BF82 --> ATCCAACCCCAACAAA-TTTTTCTTCCAACACCCTCGTCACCCATTCGAT
CT0050585 --> ..................................................
CT0040994 --> ..................................................
301 - 351
RU24412 --> CTTGAGAGCTGGGCAACTGATCACAAGATGTTTCACTTGAACTGAACAAA
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- ..................................................
CT0064964 <-- ..................................................
CT0132172 --> CTTGAGAGCTGGGCAACTGATCACAAGATGTTTCACTTGAACTGAACAAA
CT0060388 --> ..................................................
CT0119505 --> ..................................................
RH39BD1 --> CTTGAGAGCTGGGCAACTGATCACAAGATGTTTCACTTGAACTGAACAAA
RH39BF82 --> CTTGAGAGCTGGGCAACTGATCACAAGATGTTTCACTTGAACTGAACAAA
CT0050585 --> ..................................................
CT0040994 --> ..................................................
351 - 401
RU24412 --> TTTCTTAGCTATCATATTTCTTCGGTTGATGCCACTGTGCCAAACTTCTG
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- ..................................................
CT0064964 <-- ..................................................
CT0132172 --> TTT...............................................
CT0060388 --> ..................................................
CT0119505 --> ..................................................
RH39BD1 --> TTTCTTAGCTATCATATTTCTTCGGTTGATGCCACTGTGCCAAACTTCTG
RH39BF82 --> TTTCTTAGCTATCATATTTCTTCGGTTGATGCCACTGTGCCAAACTTCTG
CT0050585 --> ..................................................
CT0040994 --> ..................................................
401 - 451
RU24412 --> GCCAATGAGCTGAGGAATGACAACTTTGGAGGAGCTCCTTTC
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0046677 <-- ..........................................
CT0064964 <-- ..........................................
CT0132172 --> ..........................................
CT0060388 --> ..........................................
CT0119505 --> ..........................................
RH39BD1 --> GCCAATGAGCTGAGGAATGACAACTTTGGAGGAGCTCCTTTC
RH39BF82 --> GCCAATGAGCTGAGGAATGACAACTTTGGAGGAGCTCCTTTC
CT0050585 --> ..........................................
CT0040994 --> ..........................................
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