SNPs of unigene RU24552
               1      -     51
RU24552        --> CTTACATTACAAGCAAGCCATTGCTTGTGATCCAAGATTTTTGGAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> CTTACATTACAAGCAAGCCATTGCTTGTGATCCAAGATTTTTGGAGGCTT
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               51     -    101
RU24552        --> ACAATAATTTGGGTAATGCTTTGAAAGACATTGGCAGAGTGGACGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ACAATAATTTGGGTAATGCTTTGAAAGACATTGGCAGAGTGGACGAAGCA
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               101    -    151
RU24552        --> ATTCAATGCTACAATCAATGCCTCACTCTACAACCTAATCATCCACAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ...........CAATCAATGCCTCACTCTACAACCTAATCATCCACAAGC
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ATTCAATGCTACAATCAATGCCTCACTCTACAACCTAATCATCCACAAGC
CT0009368      --> .............................................CAAGC
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               151    -    201
RU24552        --> ACTTACCAACCTCGGGAATATTTATATGGAATGGAACATGGTAGCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ACTTACCAACCTCGGGAATATTTATATGGAATGGAACATGGTAGCTGCTG
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ACTTACCAACCTCGGGAATATTTATATGGAATGGAA..............
CT0009368      --> ACTTACCAACCTCGGGAATATTTATATGGAATGGAACATGGTAGCTGCTG
CT0115085      --> ...................ATTTATATGGAATGGAACATGGTAGCTGCTG
CT0111808      --> .................tatTTTATATGGAATGGAACATGGTAGCTGCTG
CT0112420      --> ................tattttatTATGGAATGGAACATGGTAGCTGCTG
RH46BM18       --> ..............................ATGGAACATGGTAGCTGCTG
RH46BN17       --> ..............................ATGGAACATGGTAGCTGCTG
RH53BZ46       --> ..............................ATGGAACATGGTAGCTGCTG
CT0113711      --> ...........aatttaataataggaaataggaaacaATGGTAGCTGCTG
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               201    -    251
RU24552        --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAATTGGGTTGTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
CT0060168      <-- ..................................................  Control
CT0022205      <-- ..................................................  Control
RH24AB148      <-- ..................................................  WaterDS
ET0028988      <-- ..................................................  Ethylene
ET0041171      <-- ..................................................  Ethylene
ET0041993      <-- ..................................................  Ethylene
ET0060904      <-- ..................................................  Ethylene
ET0041430      <-- ..................................................  Ethylene
ET0020371      --> ..................................................  Ethylene
CT0009368      --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
CT0115085      --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
CT0111808      --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
CT0112420      --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
RH46BM18       --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAATTGGGTTGTCTGCT  WaterDS
RH46BN17       --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAATTGGGTTGTCTGCT  WaterDS
RH53BZ46       --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAATTGGGTTGTCTGCT  WaterDS
CT0113711      --> CTGCTTCTTACTATAAGGCCACGTTGACTGTGACAACTGGGTTGTCTGCT  Control
ET0064794      --> ..................................................  Ethylene
CT0041302      --> ..................................................  Control
CT0036346      --> ..................................................  Control
RH43BK141      --> ..................................................  WaterDS
ET0119718      --> ..................................................  Ethylene

               251    -    301
RU24552        --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- CCTTTCAATTATCTTGCTATAATTTATAAACAACAGGG............
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
CT0115085      --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
CT0111808      --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
CT0112420      --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
RH46BM18       --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
RH46BN17       --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
RH53BZ46       --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
CT0113711      --> CCTTTCAATAATCTTGCTATAATTTATAAACAACAGGGAAATTACGCAGA
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               301    -    351
RU24552        --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
CT0115085      --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
CT0111808      --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
CT0112420      --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
RH46BM18       --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
RH46BN17       --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
RH53BZ46       --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
CT0113711      --> TGCAATCTCTTGCTACAATGAGGTTCTTCGCATTGATCCTTTGGCAGCTG
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               351    -    401
RU24552        --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTA..
CT0111808      --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTT...
CT0112420      --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTA..
RH46BM18       --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTAGT
RH46BN17       --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTAGT
RH53BZ46       --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTAGT
CT0113711      --> ATGGGCTTGTCAATAGGGGCAACACTTACAAGGAGATTGGTAGAGTTAG.
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               401    -    451
RU24552        --> GAGGCAATTCAGGATTACATACATGCAATATCTGTCCGGCCAACTATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> GAGGCAATTCAGGATTACATACATGCAATATCTGTCCGGCCAACTATGGC
RH46BN17       --> GAGGCAATTCAGGATTACATACATGCAATATCTGTCCGGCCAACTATGGC
RH53BZ46       --> GAGGCAATTCAGGATTACATACATGCAATATCTGTCCGGCCAACTATGGC
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               451    -    501
RU24552        --> AGAAGCTCATGCAAACTTGGCTTCAGCTTACAAGGATAGTGGACATGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> AGAAGCTCATGCAAACTTGGCTTCAGCTTACAAGGATAGTGGACATGTGG
RH46BN17       --> AGAAGCTCATGCAAACTTGGCTTCAGCTTACAAGGATAGTGGACATGTGG
RH53BZ46       --> AGAAGCTCATGCAAACTTGGCTTCAGCTTACAAGGATAGTGGACATGTGG
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               501    -    551
RU24552        --> AGGCTGCTATTAAGAGCTACAAACAGGCATTACATCTTCGACCGGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- AGGCTGCTATTAAGAGCTACAAACAGGCATTACATCTTCGACCGGACTTT
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> AGGCTGCTATTAAGAGCTACAAACAGGCATTACATCTTCGACCGGACTTT
RH46BN17       --> AGGCTGCTATTAAGAGCTACAAACAGGCATTACATCTTCGACCGGACTTT
RH53BZ46       --> AGGCTGCTATTAAGAGCTACAAACAGGCATTACATCTTCGACCGGACTTT
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               551    -    601
RU24552        --> CCAGAGGCAACTTGTAATCTTTTACATACGTTACAGTGTGTGTGCAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- CCAGAGGCAACTTGTAATCTTTTACATACGTTACAGTGTGTGTGCAGTTG
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> CCAGAGGCAACTTGTAATCTTTTACATACGTTACAGTGTGTGTGCAGTTG
RH46BN17       --> CCAGAGGCAACTTGTAATCTTTTACATACGTTACAGTGTGTGTGCAGTTG
RH53BZ46       --> CCAGAGGCAACTTGTAATCTTTTACATACGTTACAGTGTGTGTGCAGTTG
CT0113711      --> ..................................................
ET0064794      --> ...............................................ggg
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               601    -    651
RU24552        --> GGAGGACCGTGA-TAAAA-TGTTCGCTGAAGTTGAAGGGATTATCAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- GGAGGACCGTGA-TAAAA-TGTTCGCTGAAGTTGAAGGGATTATCAGGAG
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> GGAGGACCGTGA-TAAAA-TGTTCGCTGAAGTTGAAGGGATTATCAGGAG
RH46BN17       --> GGAGGACCGTGA-TAAAA-TGTTCGCTGAAGTTGAAGGGATTATCAGGAG
RH53BZ46       --> GGAGGACCGTGA-TAAAA-TGTTCGCTGAAGTTGAAGGGATTATCAGGAG
CT0113711      --> ..................................................
ET0064794      --> aaggaACCGTGAATAAAAATGTTCGCTGAAGTTGAAGGGATTATCAGGAG
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               651    -    701
RU24552        --> GCAGATCAATATGTCTCTCTTGCCTAGTGTGCAGCCTTTCCACGCAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- GCAG..............................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> GCAGATCAATATGTCTCTCTTGCCTAGTGTGCAGCCTTTCCACGCAATAG
RH46BN17       --> GCAGATCAATATGTCTCTCTTGCCTAGTGTGCAGCCTTTCCACGCAATAG
RH53BZ46       --> GCAGATCAATATGTCTCTCTTGCCTAGTGTGCAGCCTTTCCACGCAATAG
CT0113711      --> ..................................................
ET0064794      --> GCAGATCAATATGTCTCTCTTGCCTAGTGTGCAGCCTTTCCACGCAATAG
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               701    -    751
RU24552        --> CATATCCTATTGATCCAATGCTTGCACTTGATATTAGCCGTAAATATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> CATATCCTATTGATCCAATGCTTGCACTTGATATTAGCCGTAAATATGCT
RH46BN17       --> CATATCCTATTGATCCAATGCTTGCACTTGATATTAGCCGTAAATATGCT
RH53BZ46       --> CATATCCTATTGATCCAATGCTTGCACTTGATATTAGCCGTAAATATGCT
CT0113711      --> ..................................................
ET0064794      --> CATATCCTATTGATCCAATGCTTGCACTTGATATTAGCCGTAAATATGCT
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               751    -    801
RU24552        --> GCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGACTGCCTTCAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> GCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGACTGCCTTCAACCA
RH46BN17       --> GCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGACTGCCTTCAACCA
RH53BZ46       --> GCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGACTGCCTTCAACCA
CT0113711      --> ..................................................
ET0064794      --> GCACAGTGCTCCATAATTGCATCCCGGTTTGGATTGACTGCCTTCAACCA
CT0041302      --> .................TGCATCCCGGTTTGGATTGACTGCCTTCAACCA
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               801    -    851
RU24552        --> TCCTGCTCCAATTCCCATTAAGTGTAATGGTGGATTCGAGAGACTTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ................................................AG
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> TCCTGCTCCAATTCCCATTAAGTGTAATGGTGGATTCGAGAGACTTAGAG
RH46BN17       --> TCCTGCTCCAATTCCCATTAAGTGTAATGGTGGATTCGAGAGACTTAGAG
RH53BZ46       --> TCCTGCTCCAATTCCCATTAAGTGTAATGGTGGATTCGAGAGACTTAGAG
CT0113711      --> ..................................................
ET0064794      --> TCCTG.............................................
CT0041302      --> TCCTGCTCCAATTCCCATAAAGTGTAATGGTGGATTCGAGAGACTTAGAG
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               851    -    901
RU24552        --> TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
RH46BN17       --> TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
RH53BZ46       --> TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> TTGGATATGTAAGCAGTGACTTTGGTAATCACCCATTGTCACATCTTATG
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               901    -    951
RU24552        --> GGATCTGTTTTTGGGATGCACAATAAGGAGAA-TGTTGAGGTTTTCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- GGATCTGTTTTTGGGATGCACAATAAGGAGAA-TGTTGAGGTTTTCTGTT
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> GGATCTGTTTTTGGGATGCACAA...........................
RH46BN17       --> GGATCTGTTTTTGGGATGCACAATAAGGAGAA-TGTTGAGGTTTTCTGTT
RH53BZ46       --> GGATCTGTTTTTGGGATGCACAATAAGGAGAAATGTTGAGGTTTTCTGTT
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> GGATCTGTTTTTGGGATGCA..............................
CT0036346      --> ...........................GAGAA-TGTTGAGGTTTTCTGTT
RH43BK141      --> ..................................................
ET0119718      --> ..................................................

               951    -   1001
RU24552        --> ATGCCTTGAGTCCAAATGATGGAACGGAATGGAGACAGCGTACCCAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ATGCCTTGAGTCCAAATGATGGAACGGAATGGAGACAGCGTACCCAGTCT
RH24AB148      <-- .........................................ACCCAGTCT
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ATGCCCTGAGTCCAAATGATGGA...........................
RH53BZ46       --> ATGCCTTGA.........................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ATGCCTTGAGTCCAAATGATGGAACGGAATGGAGACAGCGTACCCAGTCT
RH43BK141      --> .........................................ACCCAGTCT
ET0119718      --> ..................................................

               1001   -   1051
RU24552        --> GAAGCAGAGCACTTTGTTGATGTCTCATCTATGACATCAGATATGATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- GAAGCAGAGCACTTTGTTGATGTCTCATCTATGACATCAGATATGATTGC
RH24AB148      <-- GAAGCAGAGCACTTTGTTGATGTCTCATCTATGACATCAGATATGATTGC
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> GAAGCAGAGCACTTTGTTGATGTCTCATCTATGACATCAGATATGATTGC
RH43BK141      --> GAAGCAGAGCACTTTGTTGATGTCTCATCTATGACATCAGATATGATTGC
ET0119718      --> ..................................................

               1051   -   1101
RU24552        --> CAAAATGATTAATGAGGACAACATCCAGATTTTAATTAATCTTAATGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- CAAA..............................................
RH24AB148      <-- CAAAATGATTAATGAGGACAACATCCAGATTTTAATTAATCTTAATGGTT
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> CAAAATGATTAATGAGGACAACATCCAGATTTTAATTAATCTTAATGGTT
RH43BK141      --> CAAAATGATTAATGAGGACAACATCCAGATTTTAATTAATCTTAATGGTT
ET0119718      --> ..................................................

               1101   -   1151
RU24552        --> ATACAAAGGGGGCGAGAAATGAAATATTTGCTATGCAGCCTGCACCTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ATACAAAGGGGGCGAGAAATGAAATATTTGCTATGCAGCCTGCACCTATT
ET0028988      <-- ........................................cGCACCTATT
ET0041171      <-- .........................................GCACCTATT
ET0041993      <-- ...........................................ACCTATT
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ATACAAAGGGGGCGAGAAATGAAATATTTGCTATGCAGCCTGCACCTGTT
ET0119718      --> ..................................................

               1151   -   1201
RU24552        --> CAGGTTTCATACATGGGG-TTCCCTGGGACCACTGGGGCAAATTACATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- CAGGTTTCATACATGGGG-TTCCCTGGGACCACTGGGGCAAATTACATTG
ET0028988      <-- CAGGTTTCATACATGGGG-TTCCCTGGGACCACTGGGGCAAATTACATTG
ET0041171      <-- CAGGTTTCATACATGGGG-TTCCCTGGGACCACTGGGGCAAATTACATTG
ET0041993      <-- CAGGTTTCATACATGGGGGTTCCCTGGGACCACTGGGGCAAATTACATTG
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> CAGGTTTCATACATGGGG-TTCCCTGGGACCACTGGGGCAAATTACATTG
ET0119718      --> ..................................................

               1201   -   1251
RU24552        --> ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
ET0028988      <-- ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
ET0041171      <-- ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
ET0041993      <-- ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
ET0060904      <-- ..................................................
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ATTACTTGGTCACTGATGAGTTTGTCTCACCTTTGCGCTTCTCACATATT
ET0119718      --> ..................................................

               1251   -   1301
RU24552        --> TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
ET0028988      <-- TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
ET0041171      <-- TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
ET0041993      <-- TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
ET0060904      <-- .......................cctACATTGCTACTTTGTGAATGACTA
ET0041430      <-- ..................................................
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> TACTCTGAGAAGCTTGTTCATCTTCCACATTGCTACTTTGTGAATGACTA
ET0119718      --> .............................................GACTA

               1301   -   1351
RU24552        --> TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
ET0028988      <-- TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
ET0041171      <-- TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
ET0041993      <-- TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
ET0060904      <-- TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGC-CAAAAGA-
ET0041430      <-- ..........................................CAAAAGAA
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-
ET0119718      --> TAAGCAGAAAAATCTGGATGTATTGGATCCAAATTGTCGGCACAAAAGA-

               1351   -   1401
RU24552        --> TCAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCAACCTTCAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- TCAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCAAC.........
ET0028988      <-- TCAGATTATGGTCTCCCAGAGGATAAAT......................
ET0041171      <-- TCAGATTATGGTCTCCCAGAGGATAAAT......................
ET0041993      <-- TCAGATTATGGTCTCCCAGAGGATAAAT......................
ET0060904      <-- TCAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCAACCTTCAATCA
ET0041430      <-- TCAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCAACCTTCAATCA
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> TCAGATTATGGACTCCCAGAGGATAAATTTATATTTGCAAC.........
ET0119718      --> TCAGATTATGGTCTCCCAGAGGATAAATTTATATTTGCAACCTTCAATCA

               1401   -   1451
RU24552        --> GTTGTACAAAATGGATCCTGAAATATTTAATACTTGGTGCAATATTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- GTTGTACAAAATGGATCCTGAAATATTTAATACTTGGTGCAATATTCTTA
ET0041430      <-- GTTGTACAAAATGGATCCTGAAATATTTAATACTTGGTGCAATATTCTTA
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> GTTGTACAAAATGGATCCTGAAATATTTAATACTTGGTGCAATATTCTTA

               1451   -   1501
RU24552        --> AACGTGTACCCAATAGTGCACTCTGGCTCCTCAGATTCCCAGCTGCAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- AACGTGTACCCAACAGTGCACTCTGGCTCCTCAGATTCCCAGCTGCAGGC
ET0041430      <-- AACGTGTACCCAATAGTGCACTCTGGCTCCTCAGATTCCCAGCTGCAGGC
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> AACGTGTACCCAATAGTGCACTCTGGCTCCTCAGATTCCCAGCTGCAGGC

               1501   -   1551
RU24552        --> GAAATGAGACTCCGTACATATGCTGCTGCTCAAGGAGTGCAAGCAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0024830      <-- ..................................................
CT0060168      <-- ..................................................
CT0022205      <-- ..................................................
RH24AB148      <-- ..................................................
ET0028988      <-- ..................................................
ET0041171      <-- ..................................................
ET0041993      <-- ..................................................
ET0060904      <-- GAAATGAGACT.......................................
ET0041430      <-- GAAATGAGACTCCGTACATATGCTGCTGCTCAAGGAGTGCAAGCAGACCA
ET0020371      --> ..................................................
CT0009368      --> ..................................................
CT0115085      --> ..................................................
CT0111808      --> ..................................................
CT0112420      --> ..................................................
RH46BM18       --> ..................................................
RH46BN17       --> ..................................................
RH53BZ46       --> ..................................................
CT0113711      --> ..................................................
ET0064794      --> ..................................................
CT0041302      --> ..................................................
CT0036346      --> ..................................................
RH43BK141      --> ..................................................
ET0119718      --> GAAATGAGACTCCGTACATATGCTG.........................

               1551   -   1601
RU24552        --> GATTATT
                   ~~~~~~~
CT0024830      <-- .......
CT0060168      <-- .......
CT0022205      <-- .......
RH24AB148      <-- .......
ET0028988      <-- .......
ET0041171      <-- .......
ET0041993      <-- .......
ET0060904      <-- .......
ET0041430      <-- GATTATT
ET0020371      --> .......
CT0009368      --> .......
CT0115085      --> .......
CT0111808      --> .......
CT0112420      --> .......
RH46BM18       --> .......
RH46BN17       --> .......
RH53BZ46       --> .......
CT0113711      --> .......
ET0064794      --> .......
CT0041302      --> .......
CT0036346      --> .......
RH43BK141      --> .......
ET0119718      --> .......