SNPs of unigene RU24824
               1      -     51
RU24824        --> CGAGCTAAGAATTCTAGAATCATCAATCAAGAATAGATTGATTATAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ..................................................
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> CGAGCTAAGAATTCTAGAATCATCAATCAAGAATAGATTGATTATAGAGA
ET0014280      --> ..................................................
RH48BQ45       --> ..................................................
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               51     -    101
RU24824        --> GAAGATATAAAGATGATACTGTGATAGTATTGCTAGGCAAACCGAAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ..................................................
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> GAAGATATAAAGATGATACTGTGATAGTATTGCTAGGCAAACCGAAGAGT
ET0014280      --> ..................................................
RH48BQ45       --> ..................................................
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               101    -    151
RU24824        --> AAGGTAATTACAAGAAGCACACAACTTAAAGTCCTTAAGTCTCGATGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ..................................................
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> AAGGTAATTACAAGAAGCACACAACTTAAAGTCCTTAAGTCTCGATGAAA
ET0014280      --> .....AATTACAAGAAGCACACAACTTGAAGTCCTTAAGTCTCGATGAAA
RH48BQ45       --> ..................................................
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               151    -    201
RU24824        --> CACCCAACTGATGGATGGGTACTTGCTAGCAACCGGTGAGTAGCATATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- .......................................GTAGCATATGA
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> CACCCAACTGATGGATGGGTACTTGCTAGCAACCGGTGAGTAGCATATGA
ET0014280      --> CACCCAACTGATGGATGGGTACTTGCTAGCAACCGGTGAGTAGCATATGA
RH48BQ45       --> ....................ACTTGCTAGCAACCGGTGAGTAGCATATGA
CT0023419      --> ..................................GGTGAGTAGCATATGA
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               201    -    251
RU24824        --> TGGGTATATAACACTACTACGCTTAAGCAGACAAATGGCGGGTCATCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- TGGGTATATAACACTACTACGCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> TGGGTATATAACACTACTACGCTTAAGCAGA...................
ET0014280      --> TGGGTATATAACACTACTACGCTTAAGCAGACAAATGGCAGGTCATCCAT
RH48BQ45       --> TGGGTATATAACACTACTACGCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0023419      --> TGGGTATATAACACTACTACGCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0035107      --> ....................GCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0037627      --> ....................GCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0049128      --> ....................GCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0050654      --> ....................GCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0065691      --> ....................GCTTAAGCAGACAAATGGCGGGTCATCCAT
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               251    -    301
RU24824        --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> GACTGGAAGTGAGACCAAGCGAGCTGAACTGCCGCTT.............
RH48BQ45       --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0023419      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCGCTTCATCCTCATCAGG
CT0035107      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0037627      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0049128      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0050654      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0065691      --> GACTGGAAGCGAGACCAAGCGAGCTGAACTGCCACTTCATCCTCATCAGG
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               301    -    351
RU24824        --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0023419      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCA.............
CT0035107      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0037627      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0049128      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0050654      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0065691      --> CATTCCCATGCCTTTCCTGCGCTTGATACCGTCTTCAGACCTATTCATGA
CT0013921      --> ......................TTGATACCGTCTTCAGACCTATTCATGA
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               351    -    401
RU24824        --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCATATGGGACTCCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- AAGCATGGGCATTGCCTGGATACAGGTGCACCTCATATGGGGCTCCTGAT
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCATATGGGACTCCTGAT
CT0023419      --> ..................................................
CT0035107      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCA...............
CT0037627      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCA...............
CT0049128      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCA...............
CT0050654      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCA...............
CT0065691      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCA...............
CT0013921      --> AAGCATGGGCATTGCCTGGATACAGGTGCACCTCATATGGGACTCCTGAT
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               401    -    451
RU24824        --> GCTTTCAGCTTCTCCTCCAAAGATTTGGCAGCCGTGACATCTGAAAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- GCTTTCAGCTTCTCCTCCAAAGACTTGGCAGCCGTGACATCTGAAAAGCC
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> GCTTTCAGCTTCTCCTCCAAAGACTTGGCAGCCGTGACATCTGAAAAGCC
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> GCTTTCAGCTTCTCCTCCAAAGACTTGGCAGCCGTGACATCTGAAAAGCC
CT0001680      --> ..................atcGATATGGCAGCCGTGACATCTGAAAAGCC
CT0002095      --> ..................atcGATATGGCAGCCGTGACATCTGAAAAGCC
CT0130394      --> .........................taGCAGCCGTGACATCTGAAAAGCC
ET0006977      --> ..................................................

               451    -    501
RU24824        --> AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> AAACAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
CT0001680      --> AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
CT0002095      --> AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
CT0130394      --> AA-CAAAACTATCAAGCTCTCCAAAATGAGCCTGAATAGGAGCCTTAGCT
ET0006977      --> ..................................................

               501    -    551
RU24824        --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
CT0042711      <-- .....................GATGATGGTATTCCATAAAATGCAACAAC
CT0052719      <-- .....................GATGATGGTATTCCATAAAATGCAACAAC
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTAT..................
CT0001680      --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
CT0002095      --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
CT0130394      --> TTTGCAGGGTCTGCAAGCTCTGATGATGGTATTCCATAAAATGCAACAAC
ET0006977      --> ..................................................

               551    -    601
RU24824        --> AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGAGAGAGCACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGAGAGAGCACCTC
CT0042711      <-- AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGAGAGAGCACCTC
CT0052719      <-- AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGAGAGAGCACCTC
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGGGAGAGCACCTC
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> AGCATCGACCTCAGG...................................
CT0002095      --> AGCATCGACCTCAGG...................................
CT0130394      --> AGCATCGACCTCAGGGACCAAAACAGAACTTGCAATTGAGAGAGCACCTC
ET0006977      --> ..................................................

               601    -    651
RU24824        --> CCATGCAGAATCCAGTAACTCCAACCTTCTTTGAACCATTTGCTTTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- CCATGCAGAATCCAGTAACTCCAACCTTCTTTGAACCATTTGCTTTCAGC  WaterDS
CT0042711      <-- CCATGCAGAATCCAGTAACTCCAACCTTCTTCGAACCATTTGCTTTCAGC  Control
CT0052719      <-- CCATGCAGAATCCAGTAACTCCAACCTTCTTCGAACCATTTGCTTTCAGC  Control
CT0041441      <-- ..................................................  Control
CT0110271      <-- ..................................................  Control
ET0114390      --> ..................................................  Ethylene
ET0014280      --> ..................................................  Ethylene
RH48BQ45       --> CCATGCAGAATCCAGTAACTCCAACCTTCTTTGAACCATTTGCTTTCAGC  WaterDS
CT0023419      --> ..................................................  Control
CT0035107      --> ..................................................  Control
CT0037627      --> ..................................................  Control
CT0049128      --> ..................................................  Control
CT0050654      --> ..................................................  Control
CT0065691      --> ..................................................  Control
CT0013921      --> ..................................................  Control
CT0001680      --> ..................................................  Control
CT0002095      --> ..................................................  Control
CT0130394      --> CCATGCAGAATCCAGTAACT..............................  Control
ET0006977      --> ..................................................  Ethylene

               651    -    701
RU24824        --> CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTTGCCAGTCAAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTTGCCAGTCAAGACC
CT0042711      <-- CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTT.............
CT0052719      <-- CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTT.............
CT0041441      <-- ..................................................
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTTGCCAGTCAAGACC
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> CAATTAACTGAAGCCTGGATATCCTTTACTGCAGCTTGCCAGTCAAGACC

               701    -    751
RU24824        --> TTCCATCAAATGTTGTGCTTCTGCAACATCCAAACCAACCTTTCCCCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- TTCCATCAAATGTTGTGCTTCTGCAACATCCAAACCAACCTTTCCCCGAT
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- .........................................ccccgtacT
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> TTCCATCAAATGTTGTGCTTCTGCAACATCCAAACCAACCTTTCCCCGAT
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> TTCCATCAAATGTTGTGCTTCTGCAACATCCAAACCAACCTTTCCCCGAT

               751    -    801
RU24824        --> ACAAGTCAGGGATAAGTGCTTTGAATCCAGGAGCAAGTTCAGAAATTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ACAAGTCAGGGATAAGTGCTTTGAATCCAGGAGCAAGTTCAGAAATTTTG
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ACAAGTCAGGGATAAGTGCTTTGAATCCAGGAGCAAGTTCAGAAATTTTG
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> ACAAGTCAGGGATAAGTGCTTTGAATCCAGGAGCAAGTTCAGAAATTTTG
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ACAAGTCAGGGATAAGTGCTTTGAATCCAGGAGCAAGTTCAGA.......

               801    -    851
RU24824        --> -ACAGCATGGTTCTTTATTTCAAAATCTACACCCCACCACTCTTGAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- -ACAGCATGGTTCTTTATTTCAAAATCTACACCCCACCACTCTTGAACTA
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- TACAGCATGGTTCTTTATTTCAAAATCTACACCCCACCACTCTTGAACTA
CT0110271      <-- ..................................................
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> -ACAGCATGGTTCTTTATTTCAAAATCTACACCCCACCACTCTTGAACTA
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               851    -    901
RU24824        --> CAACAATCCCAGGAGCACCTTCTTTGCCAACAACATATGCATCAAATGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- CAACAATCCCAGGAGCACCTTCTTTGCCAACAACATATGCATCAAATGCG
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- CAACAATCCCAGGAGCACCTTCTTTGCCAACAACATATGCATCAAATGCG
CT0110271      <-- ............................AACAACATATGCATCAAATGCG
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> CAACAATCCCAGGAGCACCTTCTTTGCCAACAACATATGCATCAAATGCG
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               901    -    951
RU24824        --> GCATCGTCTCTCTGGATTTGGATTTTCTTG-AACGGGGCAGCAGAATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- GCATCGTCTCTCTGGATTTGGACTTTCTTG-AACGGGGCAGCAGAATCCG
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- GCATCGTCTCTCTGGATTTGGACTTTCTTG-AACGGGGCAGCAGAATCCG
CT0110271      <-- GTATCGTCTCTCTGGATTTGGATTTTCTTGGAACGGGGCAGCAGAATCCG
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> GCATCGTCTCTCTGGATTTGGACTTTCTTG-AACGGGGCAGCAGAATCCG
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               951    -   1001
RU24824        --> CCATGGATCGAACCGAGAACCGAGAGAGCGGAGGAGGAGGGAGAGTCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- CCATGGATCGAACCGAGAACCGA...........................
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- CCATGGATCGAACCGAGAACCGA...........................
CT0110271      <-- CCATGGATCGAACCGAGAACCGAGAGAGCGGAGGAGGAGGGAGAGTCCGT
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> CCATGGAT..........................................
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               1001   -   1051
RU24824        --> GCGAGTGAGAAAGTAGGGTTT-GGGAGAGAATTT-GAGAAGGCTCTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ..................................................
CT0042711      <-- ..................................................
CT0052719      <-- ..................................................
CT0041441      <-- ..................................................
CT0110271      <-- GCGAGTGAGAAAGTAGGGTTTTGGGAGAGAATTTTGACAAGGCTCTGGAA
ET0114390      --> ..................................................
ET0014280      --> ..................................................
RH48BQ45       --> ..................................................
CT0023419      --> ..................................................
CT0035107      --> ..................................................
CT0037627      --> ..................................................
CT0049128      --> ..................................................
CT0050654      --> ..................................................
CT0065691      --> ..................................................
CT0013921      --> ..................................................
CT0001680      --> ..................................................
CT0002095      --> ..................................................
CT0130394      --> ..................................................
ET0006977      --> ..................................................

               1051   -   1101
RU24824        --> GCTGCTGATCTCAGATTTACAGCAACCGATGCTAGCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RH16N73        <-- ........................................
CT0042711      <-- ........................................
CT0052719      <-- ........................................
CT0041441      <-- ........................................
CT0110271      <-- GCTGCTGATCTCAGATTTACAGCAACCGATGCTAGCATTC
ET0114390      --> ........................................
ET0014280      --> ........................................
RH48BQ45       --> ........................................
CT0023419      --> ........................................
CT0035107      --> ........................................
CT0037627      --> ........................................
CT0049128      --> ........................................
CT0050654      --> ........................................
CT0065691      --> ........................................
CT0013921      --> ........................................
CT0001680      --> ........................................
CT0002095      --> ........................................
CT0130394      --> ........................................
ET0006977      --> ........................................