SNPs of unigene RU26750
               0      -     50
RU26750        --> .ggtACGACAAA-T-AATATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ....ACGACAAAATAAATATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
ET0130943      --> ......cgCAAA-T-AATATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
ET0134434      --> ......cgCAAA-T-AATATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
ET0134663      --> ......cgCAAA-T-AATATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
CT0067132      --> ggtactactaaatT-AATATGTTTTTAGTCATTTCA-TT-GCTGA-CATG
ET0131535      --> ...acgacaaaataaataATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
ET0132786      --> ...acgacaaaataaataATGTTTTTAGTCATTTTA-TT-GCTGA-CATG
ET0063299      --> ................tttTGTTTTTAGTCATTTTA-TT-GCTGA-CATG
CT0064347      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122049      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122221      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122363      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122529      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122769      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0122780      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123226      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123315      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123458      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123555      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123576      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123704      --> .........................aAGTCATTTTA-TT-GCTGA-CATG
CT0123873      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0123966      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124048      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124058      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124063      --> ..........................AGTCATTTTA-TTTGCTGA-CATG
CT0124273      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124289      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124810      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124870      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0124898      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125063      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125177      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125277      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125516      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125655      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125702      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125705      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125724      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0125890      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126034      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126051      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126164      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126248      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126328      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126346      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126356      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126388      --> ..........................AGTCATTTTA-TT-GCTGAACATG
CT0126448      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126471      --> ..........................AGTCATTTTACTT-GCTGA-CATG
CT0126512      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126517      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126623      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0126671      --> ..........................AGTCATTTTA-TT-GCTGA-CATG
CT0127895      --> ..........................AGTCATTT-A--T-GCTGA-CATG
CT0126195      --> .........................agtTCATTTTA-TT-GCTGA-CATG
CT0125971      --> .........................agtctATTTTA-TT-GCTGA-CATG
CT0125122      --> ........................................GCTGA-CATG
CT0126762      --> ........................................GCTGA-CATG
CT0126749      --> ............................................A-CATG
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               50     -    100
RU26750        --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0130943      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0134434      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0134663      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0067132      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0131535      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0132786      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
ET0063299      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0064347      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122049      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122221      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122363      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122529      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122769      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0122780      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123226      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123315      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123458      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123555      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123576      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123704      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123873      --> GTAC-ATTAATCGA-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0123966      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124048      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124058      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124063      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124273      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124289      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124810      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124870      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0124898      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125063      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125177      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125277      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125516      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125655      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125702      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125705      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125724      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125890      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126034      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126051      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126164      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126248      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126328      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126346      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126356      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126388      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126448      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126471      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126512      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126517      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126623      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126671      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0127895      --> GTACGATTAATC-AACGACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126195      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0125971      --> GTAC-ATTAATC-A-C-ACCATGTTTAGTGAAGAATCTTATGACTACTCT
CT0125122      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126762      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0126749      --> GTAC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
RH13J50        --> ..AC-ATTAATC-A-C-ACCATGTTT-GTGAAGAATCTTATGACTACTCT
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               100    -    150
RU26750        --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
ET0130943      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
ET0134434      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
ET0134663      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0067132      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTAGACTGA-TA
ET0131535      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
ET0132786      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
ET0063299      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0064347      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122049      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122221      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122363      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122529      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122769      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0122780      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123226      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123315      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123458      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123555      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123576      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123704      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0123873      --> AGTCTGTAACTCTGTATAACAAACATGACATTATTTTCTTACACTGA-TA
CT0123966      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124048      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124058      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124063      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGAATA
CT0124273      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124289      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124810      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124870      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0124898      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125063      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125177      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125277      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125516      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125655      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125702      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125705      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125724      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125890      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126034      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126051      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126164      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126248      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126328      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126346      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126356      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126388      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126448      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126471      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126512      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126517      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126623      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126671      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0127895      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126195      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125971      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0125122      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126762      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0126749      --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
RH13J50        --> AGTCTGTAACTCTGTATA-C-AACATGACATTATTTTCTTACACTGA-TA
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               150    -    200
RU26750        --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ATATATTCCATACA-TTGTTTTCACTCAG.....................
ET0130943      --> ATATATTCCATACA-TTGTTTTCACTCAGT....................
ET0134434      --> ATATATTCCATACA-TTGTTTTCACTCAGT....................
ET0134663      --> ATATATTCCATACA-TTGTTTTCACTCAGT....................
CT0067132      --> ATATACTCCATACA-TTGTTTTCACTCAGTTTCAACGTTTATTTAGGAAG
ET0131535      --> ATATATTCCATACA-TTGTTTTCACTCAGT....................
ET0132786      --> ATATATTCCATACA-TTGTTTTCACTCAGT....................
ET0063299      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0064347      --> ATATATTCCATACA-TTGTTTTCA..........................
CT0122049      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0122221      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0122363      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0122529      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0122769      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0122780      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123226      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123315      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123458      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123555      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123576      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123704      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123873      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0123966      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124048      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124058      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124063      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124273      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124289      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124810      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124870      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0124898      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125063      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125177      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125277      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125516      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125655      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125702      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125705      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125724      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125890      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126034      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126051      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126164      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126248      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126328      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126346      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126356      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126388      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126448      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126471      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126512      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126517      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126623      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126671      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0127895      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126195      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125971      --> ATATATTCCATACACTTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0125122      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126762      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0126749      --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
RH13J50        --> ATATATTCCATACA-TTGTTTTCACTCAGTTTCAACGTT-ATTTAGGAAG
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               200    -    250
RU26750        --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ................................ACCTAACTCGCTTGATCT
CT0131612      <-- ................................ACCTAACTCGCTTGATCT
CT0134313      <-- ................................ACCTAACTCGCTTGATCT
CT0134378      <-- ................................ACCTAACTCGCTTGATCT
CT0136017      <-- ................................ACCTAACTCGCTTGATCT
ET0108045      <-- ................................................CT
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAA-CACCTAACTCGCTTGATCT
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0064347      --> ..................................................
CT0122049      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0122221      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0122363      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0122529      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0122769      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0122780      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123226      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123315      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123458      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123555      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123576      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123704      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123873      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0123966      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124048      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124058      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124063      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124273      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124289      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124810      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124870      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0124898      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125063      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125177      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125277      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125516      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125655      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125702      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125705      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125724      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125890      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126034      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126051      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126164      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126248      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126328      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126346      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126356      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126388      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126448      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126471      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126512      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126517      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126623      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126671      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0127895      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126195      --> CTGAAAATGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125971      --> CTGAAA-TGAACATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0125122      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126762      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0126749      --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
RH13J50        --> CTGAAA-TGA-CATTATTGTCGCTCAGTAAACACCTAACTCGCTTGATCT
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               250    -    300
RU26750        --> GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
CT0131612      <-- GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
CT0134313      <-- GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
CT0134378      <-- GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
CT0136017      <-- GAAACCCTGAAATGATAGATTTGGATGTTTTC-AGCTTTGAGTTTCTT-G
ET0108045      <-- GAAACCCTGAAATGATAGATTTGGACGTTTTCTAGCTTTGAGTTTCTTTG
ET0026731      <-- ..............................cttAGCTTTGAGTTTCTT-G
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> GAAA..............................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> GAAACCCTGAAATGATAGta..............................
CT0064347      --> ..................................................
CT0122049      --> GAAACCCTGAAATGATAGta..............................
CT0122221      --> GAAACCCTGAAATGATAGta..............................
CT0122363      --> GAAACCCTGAAATGATAGta..............................
CT0122529      --> GAAACCCTGAAATGATAGta..............................
CT0122769      --> GAAACCCTGAAATGATAGta..............................
CT0122780      --> GAAACCCTGAAATGATAGta..............................
CT0123226      --> GAAACCCTGAAATGATAGta..............................
CT0123315      --> GAAACCCTGAAATGATAGta..............................
CT0123458      --> GAAACCCTGAAATGATAGta..............................
CT0123555      --> GAAACCCTGAAATGATAGta..............................
CT0123576      --> GAAACCCTGAAATGATAGta..............................
CT0123704      --> GAAACCCTGAAATGATAGta..............................
CT0123873      --> GAAACCCTGAAATGATAGta..............................
CT0123966      --> GAAACCCTGAAATGATAGta..............................
CT0124048      --> GAAACCCTGAAATGATAGta..............................
CT0124058      --> GAAACCCTGAAATGATAGtag.............................
CT0124063      --> GAAACCCTGAAATGA...................................
CT0124273      --> GAAACCCTGAAATGATAG................................
CT0124289      --> GAAACCCTGAAATGATAGta..............................
CT0124810      --> GAAACCCTGAAATGATAGta..............................
CT0124870      --> GAAACCCTGAAATGATAGta..............................
CT0124898      --> GAAACCCTGAAATGATAGta..............................
CT0125063      --> GAAACCCTGAAATGATAGta..............................
CT0125177      --> GAAACCCTGAAATGATAGta..............................
CT0125277      --> GAAACCCTGAAATGATAGta..............................
CT0125516      --> GAAACCCTGAAATGATAGta..............................
CT0125655      --> GAAACCCTGAAATGATAGta..............................
CT0125702      --> GAAACCCTGAAATGATAGta..............................
CT0125705      --> GAAACCCTGAAATGATAGta..............................
CT0125724      --> GAAACCCTGAAATGATAGta..............................
CT0125890      --> GAAACCCTGAAATGATAGta..............................
CT0126034      --> GAAACCCTGAAATGATAGta..............................
CT0126051      --> GAAACCCTGAAATGATAGta..............................
CT0126164      --> GAAACCCTGAAATGATAGta..............................
CT0126248      --> GAAACCCTGAAATGATAGta..............................
CT0126328      --> GAAACCCTGAAATGATAGta..............................
CT0126346      --> GAAACCCTGAAATGATAGta..............................
CT0126356      --> GAAACCCTGAAATGATAGtag.............................
CT0126388      --> GAAACCCTGAAATGATAGta..............................
CT0126448      --> GAAACCCTGAAATGATAGt...............................
CT0126471      --> GAAACCCTGAAATGATAGta..............................
CT0126512      --> GAAACCCTGAAATGATAGta..............................
CT0126517      --> GAAACCCTGAAATGATAGta..............................
CT0126623      --> GAAACCCTGAAATGATAGtag.............................
CT0126671      --> GAAACCCTGAAATGATAGta..............................
CT0127895      --> GAAACCCTGAAATGATAGta..............................
CT0126195      --> GAAACCCTGAAA......................................
CT0125971      --> GAAACCCTGAAATG....................................
CT0125122      --> GAAACCCTGAAATGATAGta..............................
CT0126762      --> GAAACCCTGAAATGATAGta..............................
CT0126749      --> GAAACCCTGAAATGATAGta..............................
RH13J50        --> GAAACCCTGAAATGATAGATTTGGGTGTTTTC-AGCTTTGAGTTTCTT-G
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               300    -    350
RU26750        --> AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
CT0131612      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
CT0134313      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
CT0134378      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
CT0136017      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
ET0108045      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
ET0026731      <-- AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> AAATTACTGAGCTTTCTGAGAGTCAGAAACTTGCCCCAGCTATAGGGCCT
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               350    -    400
RU26750        --> ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0131612      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0134313      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0134378      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0136017      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
ET0108045      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAAAGGCTTCACTT
ET0026731      <-- ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ATACTTGGCAGGGTTTTGTTTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0132972      --> ...................TTATTGGTGAGCTCCTCCAGAGGCTTCACTT
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               400    -    450
RU26750        --> CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0131612      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0134313      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0134378      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0136017      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
ET0108045      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAACGGAACAGAAAACCTCTCCTTC
ET0026731      <-- CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0132972      --> CTGTGTAGTGTGCTGGGTTAAGAAAGAAGGGAACAGAAAACCTCTCCTTC
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               450    -    500
RU26750        --> TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0131612      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0134313      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0134378      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0136017      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
ET0108045      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTGCT
ET0026731      <-- TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
ET0127409      <-- ...................................ATATTTATCGTTACT
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0132972      --> TCTGAGTTTACCATCACCCTATGTTCCACACTCTCATATTTATCGTTACT
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               500    -    550
RU26750        --> CCATACCTGAATAATGTCACCAACATTGATGATATAGGCATTTGGTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAG.............
CT0131612      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAG.............
CT0134313      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAG.............
CT0134378      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAag............
CT0136017      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAG.............
ET0108045      <-- CCATA.............................................
ET0026731      <-- CCATACCTGAATAATGTCACCAACATTGATG...................
ET0127409      <-- CCATACCTGAATAATGTCACCAACATTGATGATATAGGCATTTGGTGTAG
CT0022123      <-- ..................ACCAACATTGATGATATAGGCATTTGGTGTAG
ET0054307      <-- ...................CCAACATTGATGATATAGGCATTTGGTGTAG
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> CCATACCTGAATAATGTCACCAACATTGATGATATGGGCATTTGGTGTAG
CT0132972      --> CCATACCTGAATAATGTCACCAACATTGATGATATAGGCATTTGGTGTAG
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               550    -    600
RU26750        --> GTCTGACCC-GAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- GTCTGACCC-GAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
CT0022123      <-- GTCTGACCC-GAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
ET0054307      <-- GTCTGACCCCGAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
ET0083435      <-- ...........................................CCAATCC
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> GTCTGACCC-GAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
CT0132972      --> GTCTGACCC-GAATCCACTCTCCATCTGTTTTTCGCTTCACCTCCAATCC
CT0129002      --> .............................................AATCC
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               600    -    650
RU26750        --> TCCAACCTCATCTTGAGCCAGTACAGTTAAGGCACCACCATCCTTGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- TCCAACCTCATCTTGAGCCAGTACAGTTAAGGCACCACCATCCTTGTGGC
CT0022123      <-- TCCAACCTCATCTTGAGCCAGTACAGTTAAG...................
ET0054307      <-- TCCAACCTCATCTTGAGCCAGTACAGTTAAGGCACCACCATCCTTGTGGC
ET0083435      <-- TCCAACCTCATCTTGAGACAGTACAGTTAAGGCACCACCATCCTTGTGGC
RH33AK43       <-- ......................ACAGTTAAGGCACCACCATCCTTGTGGC
RH53BX58       <-- ......................ACAGTTAAGGCACCACCATCCTTGTGGC
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> TCCAACCTCATCTTGAGCCAGT............................
CT0132972      --> TCCAACCTCATCTTGAGCCAGTACAGTTAAGGCACCACCATCCTTGTGGC
CT0129002      --> TCCAACCTCATCTTGAGCCAGTACAGTTAAGGCACCACCATCCTTGTGGC
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               650    -    700
RU26750        --> GCCCAACACCGAGTGCTAACTGAGGGGAAGGG-CAAGGTGGATAGTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- GCCCAACAC.........................................
CT0022123      <-- ..................................................
ET0054307      <-- GCCCAACACCGAGTGCTAACTGAGGGGAAGGGGCAAGGTGGATAGTGATT
ET0083435      <-- GCCCAACACCGAGTGCTAACTGAGGGGAAGGG-CAAGGTGGATAGTGATT
RH33AK43       <-- GCCCAACACCGAGTGCTAACTGAGGGGAAGGG-CAAGGTGGATAGTGATT
RH53BX58       <-- GCCCAACACCGAGTGCTAACTGAGGGGAAGGG-CAAGGTGGATAGTGATT
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> GCCCAACACCGAGTGCTAACTGAGGGGAAGG...................
CT0129002      --> GCCCAACACCGAGTGCTAACTGAGGGGAAGGG-CAAGGTGGATAGTGATT
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               700    -    750
RU26750        --> GAGTCTGATAAAACTGGTTTGGTCCTTGAAGTAGCCTTTGAACCTGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- GAGTCTGATAAA......................................
ET0083435      <-- GAGTCTGATAAAACTGGTTTGGTCCTTGAAGTAGCCTTTGAACCTGTCTT
RH33AK43       <-- GAGTCTGATAAAACTGGTTTGGTCTTTGAAGTAGCCTTTGAACCTGTCTT
RH53BX58       <-- GAGTCTGATAAAACTGGTTTGGTCCTTGAAGTAGCCTTTGAACCTGTCTT
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> GAGTCTGATAAAACTGGTTTGGTCCTTGAA....................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               750    -    800
RU26750        --> CTGGCAAGCCTAGGCTCAACGCAATTAGTCCCATCAACTTTAGAGATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- CTGGCAAGCCTAGGCTCAACGCAATTAGTCCCATCAACTTTAGAGATAGC
RH33AK43       <-- CTGGCAAGCCTAGGCTCAACGCAATTAGTCCCATCAACTTTAGAGATAGC
RH53BX58       <-- CTGGCAAGCCTAGGCTCAACGCAATTAGTCCCATCAACTTTAGAGATAGC
CT0000814      <-- ..................ACGCAATTAGTCCCATCAACTTTAGAGATAGC
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ...................CGCAATTAGTCCCATCAACTTTAGAGATAGC
ET0085589      --> ...................CGCAATTAGTCCCATCAACTTTAGAGATAGC
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               800    -    850
RU26750        --> TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAG....
RH33AK43       <-- TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
RH53BX58       <-- TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
CT0000814      <-- TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
ET0023896      <-- ......................CTTCAAGCACCTCCCTTAATTCAGGGGG
ET0005477      <-- ...........................................CAGGGGG
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
ET0085589      --> TTTTCTACTTCTTGAGAATATTCTTCAAGCACCTCCCTTAATTCAGGGGG
CT0109161      --> ..................................................
CT0109355      --> ..................................................
CT0109458      --> ..................................................
CT0109739      --> ..................................................
CT0112007      --> ..................................................
CT0112746      --> ..................................................
CT0114889      --> ..................................................

               850    -    900
RU26750        --> GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
RH53BX58       <-- GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
CT0000814      <-- GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
ET0023896      <-- GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
ET0005477      <-- GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
ET0085589      --> GTTCTCAGGCCATTGATTAAACCACTGTGTCTCCTCCTTGTCATCAGGCT
CT0109161      --> ...............................TCCTCCTTGTCATCAGGCT
CT0109355      --> ...............................TCCTCCTTGTCATCAGGCT
CT0109458      --> ...............................TCCTCCTTGTCATCAGGCT
CT0109739      --> ...............................TCCTCCTTGTCATCAGGCT
CT0112007      --> ...............................TCCTCCTTGTCATCAGGCT
CT0112746      --> ...............................TCCTCCTTGTCATCAGGCT
CT0114889      --> ...............................TCCTCCTTGTCATCAGGCT

               900    -    950
RU26750        --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- CAGTCGAGGAGGGT....................................
RH53BX58       <-- CAGTCGAGGAGGGT....................................
CT0000814      <-- CAGTCGAGGAGGGTACTA................................
ET0023896      <-- CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
ET0005477      <-- CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0000833      <-- ..................................................
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> CAGTCGAGGAGGGTACTAATGTAG..........................
ET0085589      --> CAGTCGAGGAGGGTACTAATGTAG..........................
CT0109161      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0109355      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0109458      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0109739      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0112007      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0112746      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC
CT0114889      --> CAGTCGAGGAGGGTACTAATGTAGGCTCCTCCACAAGGAAATCAAACACC

               950    -   1000
RU26750        --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGCTCAGTGTCATAGTAACCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................  Control
CT0131612      <-- ..................................................  Control
CT0134313      <-- ..................................................  Control
CT0134378      <-- ..................................................  Control
CT0136017      <-- ..................................................  Control
ET0108045      <-- ..................................................  Ethylene
ET0026731      <-- ..................................................  Ethylene
ET0127409      <-- ..................................................  Ethylene
CT0022123      <-- ..................................................  Control
ET0054307      <-- ..................................................  Ethylene
ET0083435      <-- ..................................................  Ethylene
RH33AK43       <-- ..................................................  WaterDS
RH53BX58       <-- ..................................................  WaterDS
CT0000814      <-- ..................................................  Control
ET0023896      <-- TCCTTCCAGTCTCTGACTATTTTTGGTATGCTCAGTGTCATAGTAACCTA  Ethylene
ET0005477      <-- TCCTTCCAGTCTCTGAC-ATTTTTGGTATGCTCAGTGTCATAGTAACCTA  Ethylene
CT0000833      <-- ..................................................  Control
ET0140046      --> ..................................................  Ethylene
ET0130943      --> ..................................................  Ethylene
ET0134434      --> ..................................................  Ethylene
ET0134663      --> ..................................................  Ethylene
CT0067132      --> ..................................................  Control
ET0131535      --> ..................................................  Ethylene
ET0132786      --> ..................................................  Ethylene
ET0063299      --> ..................................................  Ethylene
CT0064347      --> ..................................................  Control
CT0122049      --> ..................................................  Control
CT0122221      --> ..................................................  Control
CT0122363      --> ..................................................  Control
CT0122529      --> ..................................................  Control
CT0122769      --> ..................................................  Control
CT0122780      --> ..................................................  Control
CT0123226      --> ..................................................  Control
CT0123315      --> ..................................................  Control
CT0123458      --> ..................................................  Control
CT0123555      --> ..................................................  Control
CT0123576      --> ..................................................  Control
CT0123704      --> ..................................................  Control
CT0123873      --> ..................................................  Control
CT0123966      --> ..................................................  Control
CT0124048      --> ..................................................  Control
CT0124058      --> ..................................................  Control
CT0124063      --> ..................................................  Control
CT0124273      --> ..................................................  Control
CT0124289      --> ..................................................  Control
CT0124810      --> ..................................................  Control
CT0124870      --> ..................................................  Control
CT0124898      --> ..................................................  Control
CT0125063      --> ..................................................  Control
CT0125177      --> ..................................................  Control
CT0125277      --> ..................................................  Control
CT0125516      --> ..................................................  Control
CT0125655      --> ..................................................  Control
CT0125702      --> ..................................................  Control
CT0125705      --> ..................................................  Control
CT0125724      --> ..................................................  Control
CT0125890      --> ..................................................  Control
CT0126034      --> ..................................................  Control
CT0126051      --> ..................................................  Control
CT0126164      --> ..................................................  Control
CT0126248      --> ..................................................  Control
CT0126328      --> ..................................................  Control
CT0126346      --> ..................................................  Control
CT0126356      --> ..................................................  Control
CT0126388      --> ..................................................  Control
CT0126448      --> ..................................................  Control
CT0126471      --> ..................................................  Control
CT0126512      --> ..................................................  Control
CT0126517      --> ..................................................  Control
CT0126623      --> ..................................................  Control
CT0126671      --> ..................................................  Control
CT0127895      --> ..................................................  Control
CT0126195      --> ..................................................  Control
CT0125971      --> ..................................................  Control
CT0125122      --> ..................................................  Control
CT0126762      --> ..................................................  Control
CT0126749      --> ..................................................  Control
RH13J50        --> ..................................................  WaterDS
CT0132972      --> ..................................................  Control
CT0129002      --> ..................................................  Control
ET0085198      --> ..................................................  Ethylene
ET0085589      --> ..................................................  Ethylene
CT0109161      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0109355      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0109458      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0109739      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0112007      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0112746      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control
CT0114889      --> TCCTTCCAGTCTCTGAC-ATTTTTGGTATGATCAGTGTCATAGTAACCTA  Control

               1000   -   1050
RU26750        --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- CCACACATTTTTtca...................................
ET0005477      <-- CCACACATTTTTCATCCC................................
CT0000833      <-- .....................TAATCTTTCTCTTCTCCTCCAAAGGCTGA
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0109355      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0109458      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0109739      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0112007      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0112746      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA
CT0114889      --> CCACACATTTTTCATCCCTCCTAATCTTTCTCTTCTCCTCCAAAGGCTGA

               1050   -   1100
RU26750        --> GCAAAGAACTTCCTGGCCGCAGTATCAATCTTTTTGCGCTTTTCCAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ..................................................
CT0131612      <-- ..................................................
CT0134313      <-- ..................................................
CT0134378      <-- ..................................................
CT0136017      <-- ..................................................
ET0108045      <-- ..................................................
ET0026731      <-- ..................................................
ET0127409      <-- ..................................................
CT0022123      <-- ..................................................
ET0054307      <-- ..................................................
ET0083435      <-- ..................................................
RH33AK43       <-- ..................................................
RH53BX58       <-- ..................................................
CT0000814      <-- ..................................................
ET0023896      <-- ..................................................
ET0005477      <-- ..................................................
CT0000833      <-- GCAAAGAACTTCCTGGCCGCAGTATCAATCTTTTTGCGCTTTTCCAGTGG
ET0140046      --> ..................................................
ET0130943      --> ..................................................
ET0134434      --> ..................................................
ET0134663      --> ..................................................
CT0067132      --> ..................................................
ET0131535      --> ..................................................
ET0132786      --> ..................................................
ET0063299      --> ..................................................
CT0064347      --> ..................................................
CT0122049      --> ..................................................
CT0122221      --> ..................................................
CT0122363      --> ..................................................
CT0122529      --> ..................................................
CT0122769      --> ..................................................
CT0122780      --> ..................................................
CT0123226      --> ..................................................
CT0123315      --> ..................................................
CT0123458      --> ..................................................
CT0123555      --> ..................................................
CT0123576      --> ..................................................
CT0123704      --> ..................................................
CT0123873      --> ..................................................
CT0123966      --> ..................................................
CT0124048      --> ..................................................
CT0124058      --> ..................................................
CT0124063      --> ..................................................
CT0124273      --> ..................................................
CT0124289      --> ..................................................
CT0124810      --> ..................................................
CT0124870      --> ..................................................
CT0124898      --> ..................................................
CT0125063      --> ..................................................
CT0125177      --> ..................................................
CT0125277      --> ..................................................
CT0125516      --> ..................................................
CT0125655      --> ..................................................
CT0125702      --> ..................................................
CT0125705      --> ..................................................
CT0125724      --> ..................................................
CT0125890      --> ..................................................
CT0126034      --> ..................................................
CT0126051      --> ..................................................
CT0126164      --> ..................................................
CT0126248      --> ..................................................
CT0126328      --> ..................................................
CT0126346      --> ..................................................
CT0126356      --> ..................................................
CT0126388      --> ..................................................
CT0126448      --> ..................................................
CT0126471      --> ..................................................
CT0126512      --> ..................................................
CT0126517      --> ..................................................
CT0126623      --> ..................................................
CT0126671      --> ..................................................
CT0127895      --> ..................................................
CT0126195      --> ..................................................
CT0125971      --> ..................................................
CT0125122      --> ..................................................
CT0126762      --> ..................................................
CT0126749      --> ..................................................
RH13J50        --> ..................................................
CT0132972      --> ..................................................
CT0129002      --> ..................................................
ET0085198      --> ..................................................
ET0085589      --> ..................................................
CT0109161      --> GCAAAG............................................
CT0109355      --> GCAAAG............................................
CT0109458      --> GCAAAG............................................
CT0109739      --> GCAAAG............................................
CT0112007      --> GCAAAG............................................
CT0112746      --> GCAAAG............................................
CT0114889      --> GCAAAG............................................

               1100   -   1150
RU26750        --> CACTCCATGGTTGATCACTTGGAAGAAGCCCCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0129479      <-- ...................................
CT0131612      <-- ...................................
CT0134313      <-- ...................................
CT0134378      <-- ...................................
CT0136017      <-- ...................................
ET0108045      <-- ...................................
ET0026731      <-- ...................................
ET0127409      <-- ...................................
CT0022123      <-- ...................................
ET0054307      <-- ...................................
ET0083435      <-- ...................................
RH33AK43       <-- ...................................
RH53BX58       <-- ...................................
CT0000814      <-- ...................................
ET0023896      <-- ...................................
ET0005477      <-- ...................................
CT0000833      <-- CACTCCATGGTTGATCACTTGGAAGAAGCCCCAGT
ET0140046      --> ...................................
ET0130943      --> ...................................
ET0134434      --> ...................................
ET0134663      --> ...................................
CT0067132      --> ...................................
ET0131535      --> ...................................
ET0132786      --> ...................................
ET0063299      --> ...................................
CT0064347      --> ...................................
CT0122049      --> ...................................
CT0122221      --> ...................................
CT0122363      --> ...................................
CT0122529      --> ...................................
CT0122769      --> ...................................
CT0122780      --> ...................................
CT0123226      --> ...................................
CT0123315      --> ...................................
CT0123458      --> ...................................
CT0123555      --> ...................................
CT0123576      --> ...................................
CT0123704      --> ...................................
CT0123873      --> ...................................
CT0123966      --> ...................................
CT0124048      --> ...................................
CT0124058      --> ...................................
CT0124063      --> ...................................
CT0124273      --> ...................................
CT0124289      --> ...................................
CT0124810      --> ...................................
CT0124870      --> ...................................
CT0124898      --> ...................................
CT0125063      --> ...................................
CT0125177      --> ...................................
CT0125277      --> ...................................
CT0125516      --> ...................................
CT0125655      --> ...................................
CT0125702      --> ...................................
CT0125705      --> ...................................
CT0125724      --> ...................................
CT0125890      --> ...................................
CT0126034      --> ...................................
CT0126051      --> ...................................
CT0126164      --> ...................................
CT0126248      --> ...................................
CT0126328      --> ...................................
CT0126346      --> ...................................
CT0126356      --> ...................................
CT0126388      --> ...................................
CT0126448      --> ...................................
CT0126471      --> ...................................
CT0126512      --> ...................................
CT0126517      --> ...................................
CT0126623      --> ...................................
CT0126671      --> ...................................
CT0127895      --> ...................................
CT0126195      --> ...................................
CT0125971      --> ...................................
CT0125122      --> ...................................
CT0126762      --> ...................................
CT0126749      --> ...................................
RH13J50        --> ...................................
CT0132972      --> ...................................
CT0129002      --> ...................................
ET0085198      --> ...................................
ET0085589      --> ...................................
CT0109161      --> ...................................
CT0109355      --> ...................................
CT0109458      --> ...................................
CT0109739      --> ...................................
CT0112007      --> ...................................
CT0112746      --> ...................................
CT0114889      --> ...................................