SNPs of unigene RU27106
               1      -     51
RU27106        --> CGGCGAGATCCAGGTGCTGCTGGAGTTCATGGACGGCGGTTCGTTAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> CGGCGAGATCCAGGTGCTGCTGGAGTTCATGGACGGCGGTTCGTTAGAGG
ET0093643      --> ..........CAGGTGCTGCTGGAGTTCATGGACGGCGGTTCGTTAGAGG
CT0059330      --> ................................ACGGCGGTTCGTTAGAGG
CT0070174      --> ................................ACGGCGGTTCGTTAGAGG
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               51     -    101
RU27106        --> GGAAGCACATCGCCAACGAGAAAAGCCTCTCCGACTTGGCACGGCAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> GGAAGCACATCGCCAACGAGAAAAGCCTCTCCGACTTGGCACGGCAGATC
ET0093643      --> GGAAGCACATCGCCAACGAGAAAAGCCTCTCCGACTTGGCACGGCAGATC
CT0059330      --> GGAAGCACATCGCCAACGAGAAAAGCCTCTCCGACTTGGCACGGCAGATC
CT0070174      --> GGAAGCACATCGCCAACGAGAAAAGCCTCTCCGACTTGGCACGGCAGATC
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               101    -    151
RU27106        --> CTCACCGGATTGGCCTACCTCCACAAACGGCACATCGTCCACCGCGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................  Control
CT0136191      <-- ..................................................  Control
RH33AK56       <-- ..................................................  WaterDS
CT0090621      <-- ..................................................  Control
CT0094813      <-- ..................................................  Control
CT0096967      <-- ..................................................  Control
CT0097038      <-- ..................................................  Control
CT0096159      <-- ..................................................  Control
ET0098648      --> CTCACCGGATTGGCCTACCTCCACAAACGGCACATCGTCCACCGCGACAT  Ethylene
ET0093643      --> CTCACCGGATTGGCCTACCTCCACAAACGGCACATCGTCCACCGCGACAT  Ethylene
CT0059330      --> CTCACCGGATTGGCCTACCTCCACAAACGGCACATCGTCCACCGCGATAT  Control
CT0070174      --> CTCACCGGATTGGCCTACCTCCACAAACGGCACATCGTCCACCGCGATAT  Control
ET0112741      --> ..................................................  Ethylene
CT0062469      --> ..................................................  Control
RH13J37        --> ..................................................  WaterDS
ET0035027      --> ..................................................  Ethylene
ET0049953      --> ..................................................  Ethylene
ET0067584      --> ..................................................  Ethylene
ET0074009      --> ..................................................  Ethylene
ET0074607      --> ..................................................  Ethylene
ET0142015      --> ..................................................  Ethylene
CT0001934      --> ..................................................  Control

               151    -    201
RU27106        --> CAAGCCTTCGAATCTCTTGATCAACGCCCGGAATCAGGTCAAGATCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> CAAGCCTTCGAATCTCTTGATCAACGCCCGGAATCAGGTCAAGATCGCCG
ET0093643      --> CAAGCCTTCGAATCTCTTGATCAACGCCCGGAATCAGGTCAAGATCGCCG
CT0059330      --> CAAGCCTTCGAATCTCTTGATCAACGCCCGGAATCAGGTCAAGATCGCCG
CT0070174      --> CAAGCCTTCGAATCTCTTGATCAACGCCCGGAATCAGGTCAAGATCGCCG
ET0112741      --> ..........................................GATCGCCG
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               201    -    251
RU27106        --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGTGTAACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGT........
ET0093643      --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGTGTAACTCC
CT0059330      --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGTGTAACTCC
CT0070174      --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGTGTAACTCC
ET0112741      --> ATTTCGGAGTCAGCCGGATTTTGGCGCAGACTATGGACCCGTGTAACTCC
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               251    -    301
RU27106        --> TCTGTAGGGACCATAGCCTACATGAGCCCGGAGAGGATCAACACCGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- .......................GAGCCCGGAGAGGATCAACACCGATCT
CT0136191      <-- ........................AGCCCGGAGAGGATCAACACCGATCT
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> T.................................................
CT0059330      --> TCTGTAGGGACCATAGCCTACA............................
CT0070174      --> TCTGTAGGGACCATAGCCTACA............................
ET0112741      --> TCTGTAGGGACCATAGCCTACATGAGCCCGGAGAGGATCAACACCGATCT
CT0062469      --> ..............AGCCTACATGAGCCCGGAGAGGATCAACACCGATCT
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               301    -    351
RU27106        --> CAATCAGGGCAGGTACGACGGCTACGCCGGCGATATTTGGAGCCTGGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- CAATCAGGGCAGGTACGACGGCTACGCCGGCGATATTTGGAGCCTGGGGG
CT0136191      <-- CAATCAGGGCAGGTACGACGGCTACGCCGGCGATATTTGGAGCCTGGGGG
RH33AK56       <-- ..............ACGACGGCTACGCCGGCGATATTTGGAGCCTGGGTG
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> CAATCAGGGCAGGTACGACGGCTACGCCGGCGATATTTGGAGCCTGGGGG
CT0062469      --> CAATCAGGGCAGGTACGACGGCTACGCCGGCGATATTTGGAGCCTGGGGG
RH13J37        --> ..............ACGACGGCTACGCCGGCGATATTTGGAGCCTGGGTG
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               351    -    401
RU27106        --> TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
CT0136191      <-- TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
RH33AK56       <-- TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
CT0062469      --> TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
RH13J37        --> TCAGCATCTTGGAGTTTTACATGGGCCGATTTCCGTTCAATGTGCAGCGG
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               401    -    451
RU27106        --> GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
CT0136191      <-- GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
RH33AK56       <-- GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTACGTCTCAGCC
CT0090621      <-- ................CCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
CT0094813      <-- ................CCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
CT0096967      <-- ................CCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
CT0097038      <-- ................CCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
CT0096159      <-- .................CAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> GCTCAGGGAGATTGGGCCAGCTTAATGTGG....................
CT0062469      --> GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
RH13J37        --> GCTCAGGGAGATTGGGCCAGCTTAATGTGGGCCATTTGTATGTCTCAGCC
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               451    -    501
RU27106        --> GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
CT0136191      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
RH33AK56       <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCAGCATTTCATTGCTT
CT0090621      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
CT0094813      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
CT0096967      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
CT0097038      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
CT0096159      <-- GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> GCCTGAGGCTCCTCCGACGGCCTCCAGAGAT...................
RH13J37        --> GCCTGAGGCTCCTCCGACGGCCTCCAGAGATTTCCAGCATTTCATTGCTT
ET0035027      --> .........TCCTCCGACGGCCTCCAGAGATTTCCGGCATTTCATTGCTT
ET0049953      --> ..................................................
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               501    -    551
RU27106        --> GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCGCAGCAGTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCGCAGCAGTTGTTG
CT0136191      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCGCAGCAGTTGTTG
RH33AK56       <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCGCAGCAGTTGTTG
CT0090621      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCCCAGCAGTTGTTG
CT0094813      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCCCAGCAGTTGTTG
CT0096967      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCCCAGCAGTTGTTG
CT0097038      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCCCAGCAGTTGTTG
CT0096159      <-- GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCCCAGCAGTTGTTG
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> GCTGTTTGCAGAGAGAGCCGAACAGGAGAATGTCGGCGCAGCAGTTGTTG
ET0035027      --> GCTGTTTGCAGAGAGAGCCCAACAGGAGAATGTCGGCGCAGCAGTTGTTG
ET0049953      --> ......................CAGGAGAATGTCGGCGCAGCAGTTGTTG
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               551    -    601
RU27106        --> CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--CGGGCCGGCGGAGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- CAGCACCCA.........................................
CT0136191      <-- CAGCACCCA.........................................
RH33AK56       <-- CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--CGGGCCGCCGCAGGTTC
CT0090621      <-- CAGCACCCATTTTATCTCCGGCAA-TGGGGG--C................
CT0094813      <-- CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--C................
CT0096967      <-- CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--C................
CT0097038      <-- CAGCACCCATTT-ATCTCCGGCAA-TGGGGGgc.................
CT0096159      <-- CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--C................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> CAGCACCCATTT-ATCTCCGGTAA-TGGGGG--CGGGCCGCCGCAGGTTC
ET0035027      --> CAGCACCCATTT-ATCTCCGGCAAGTGGGGGGCCGGCCCGCCGCAGGTTC
ET0049953      --> CAGCACCCATTT-ATCTCCGGCAA-TGGGGG--CGGGCCGCCTCAGGTTC
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               601    -    651
RU27106        --> ATCAGAATCTGCACACTCTTCTACCACCGCCACGCCCGCTTCCTTCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ATCAGAATCTGCACACTCTTCTACCACCGCCACGCCCGCTTCCTTCTTAG
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ATCAGAATCTGCACACTCTTCTACCACCGCCACGCCCGCTTCCTTCTTAG
ET0035027      --> ATCAGAATCTGCACACTCTTC-ACCACCGCCAC.................
ET0049953      --> ATCAGAATCTGCACACTCTTCTACCACCGCCACGCCCGCTTCCTTCTTAG
ET0067584      --> ..................................................
ET0074009      --> ..................................................
ET0074607      --> ..................................................
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               651    -    701
RU27106        --> CTAGTACTTTCTATCTTTGCCCAATTACTGTGATGATGATGCTGGTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- CTAGT.............................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> CTAGT.............................................
ET0035027      --> ..................................................
ET0049953      --> CTAGTACTTTCTATCTTTGCCCAATTACTGTGATGATGATGCTGGTTTTA
ET0067584      --> ......................AATTACTGTGATGATGATGCTGGTTTTA
ET0074009      --> ......................AATTACTGTGATGATGATGCTGGTTTTA
ET0074607      --> ......................AATTACTGTGATGATGATGCTGGTTTTA
ET0142015      --> ..................................................
CT0001934      --> ..................................................

               701    -    751
RU27106        --> CTTGGTTAATTTTCTGTCTTTCCTCTTTTTGATTTTTTTGATAATGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> CTTGGTT...........................................
ET0067584      --> CTTGGTTAATTTTCTGTCTTTCCTCTTTTTGATGATAATGATAATGATGA
ET0074009      --> CTTGGTTAATTTTCTGTCTTTCCTCTTTTTGATGATAATGATAATGATGA
ET0074607      --> CTTGGTTAATTTTCTGTCTTTCCTCTTTTTGATGATAATGATAATGATGA
ET0142015      --> ..............................gatgataaTGATAATGATGA
CT0001934      --> ..................................................

               751    -    801
RU27106        --> TATGATTTGGTGTTTAAGGAAGATGATGATGATGGGTGAGATTTGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> TATGATTTGGTGTTTAAGGAAGATGATGATGATGGGTGAGATTTGATGAT
ET0074009      --> TATGATTTGGTGTTTAAGGAAGATGATGATGATGGGTGAGATTTGATGAT
ET0074607      --> TATGATTTGGTGTTTAAGGAAGATGATGATGATGGGTGAGATTTGATGAT
ET0142015      --> TATGATTTGGTGTTTAAGGAAGATGATGATGATGGGTGAGATTTGATGAT
CT0001934      --> ..................................................

               801    -    851
RU27106        --> TTGACGAGGAATTGGGGAAATGGG-TGC-ATTTTGTTTTTAGCTTT-ACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> TTGACGAGGAATTGGGGAAATGGGGTGC-ATTTTGTTTTTAGCTTT-ACT
ET0074009      --> TTGACGAGGAATTGGGGAAATGGG-TGC-ATTTTGTTTTTAGCTTTTACT
ET0074607      --> TTGACGAGGAATTGGGGAAATGGG-TGC-ATTTTGTTTTTAGCTTT-ACT
ET0142015      --> TTGACGAGGAATTGGGGAAATGGGGTGCTATTTTGTTTTTAGCTTT-ACT
CT0001934      --> ..................................................

               851    -    901
RU27106        --> TCTTACTTTTTTTAATCAGTCCATCACTCAACTCAATCATTCTGTCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ..................................................
CT0136191      <-- ..................................................
RH33AK56       <-- ..................................................
CT0090621      <-- ..................................................
CT0094813      <-- ..................................................
CT0096967      <-- ..................................................
CT0097038      <-- ..................................................
CT0096159      <-- ..................................................
ET0098648      --> ..................................................
ET0093643      --> ..................................................
CT0059330      --> ..................................................
CT0070174      --> ..................................................
ET0112741      --> ..................................................
CT0062469      --> ..................................................
RH13J37        --> ..................................................
ET0035027      --> ..................................................
ET0049953      --> ..................................................
ET0067584      --> TCTTACTTTTTTTAATCAGTCCATCACTCAACTCAATCATTCTGTCATT.
ET0074009      --> TCTTACTTTTTTTAATCAGTCCATCACTCAACTCAATCATTCTGTCATT.
ET0074607      --> TCTTACTTTTTTTAATCAGTCCATCACTCAACTCAATCATTCTGTCATTG
ET0142015      --> TCTTACTTTTTTTAATCAGTCCATCACTCAACTCAATCATTCTGTCATTG
CT0001934      --> .......TTTGTTAGTCAGTCCATCACTCAACTCAATCATTCTGTCATTG

               901    -    951
RU27106        --> ATAATGTGAATGGTAACTGGAAATGGGATATTGGTTCTAGGGGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CT0137848      <-- ...............................................
CT0136191      <-- ...............................................
RH33AK56       <-- ...............................................
CT0090621      <-- ...............................................
CT0094813      <-- ...............................................
CT0096967      <-- ...............................................
CT0097038      <-- ...............................................
CT0096159      <-- ...............................................
ET0098648      --> ...............................................
ET0093643      --> ...............................................
CT0059330      --> ...............................................
CT0070174      --> ...............................................
ET0112741      --> ...............................................
CT0062469      --> ...............................................
RH13J37        --> ...............................................
ET0035027      --> ...............................................
ET0049953      --> ...............................................
ET0067584      --> ...............................................
ET0074009      --> ...............................................
ET0074607      --> ATAATGTGAAT....................................
ET0142015      --> ATAATGTGAAT....................................
CT0001934      --> ATAATGTGAATGGTAACTGGAAATGGGATATTGGTTCTAGGGGGACT