RU01402 sequence (1136 bp)


Member Information
AAATACCTCCGATTCCTCGATGCAGACTTGCTACTGCCTTCTGCTACATTTGGTGGACTGGTTTTCTCAATTTTTGATGCTT
CATTAGCCGACTGGAAACCTGCCCAATCATTATCGTCAGCTGGTGCTGCATCTGAGCTATTCTCACTGGGACTTTCTACTGA
GAGCATGCCGAAAAGGTCAGTAGCATAATCAACTTTTGGAGGCACAGCAGAAGCAACTTCAGCAGCTGGCTTTGTTGCTTCA
GCCTGTGGAACTGCTGGTTCTGTTTTCTGAACATTTTGTGGTTTTGGGACCTGTACAACTTGATCAGGCCCTTTAGGAGGAA
CAGGAAGACTGATTCTTCCAGCAGGAGCACTGTCTCTTCTACTAGCTGTTTGTATGTTCTTCCTTTCCTCAAATTTCTTTTC
AGAATTTGCGATATACCCATGCCCACTGCTTTCAACAGGTCTCTGCCAATGTGTGGAAGCATTTTCCTCACGTCCTCTAGAA
GGTGATTTTGGTTTTCCATCTTTAGCGACCCATCTCTTATCTTCATACCTGAAGCGAATATCCAATCATTACAAAAGCAGTT
TTGATACTTTAGCTAAATATGCATAACAGAGGAAATGGATGCTAGTTGTCTTAGGGATACCGCTGGGACGCACTTTGCACGA
ATAAAATTTTCAATACCAACTCCGTCATAGTTTGGAGGTAGTTCTGCTTCCCAGTAACTATTTGCCTTTTCATTTCCCATTG
ATTGAATAAATGCCACCTGCTCTGGTAGCCATGTGTCCAAGGTAGCAGACCTCACCTTGGATATGTGGACCCCGAGACTTCT
GTGGATCCCAGAACACTGCATGCATACAAAGATACCTAAGTTCACACTGGCCCATCTTGGACCCTTGGCTTTGCAGTCAGCA
CATTCCCTATTCTCTGGCAATTTAAGAAGTCCTTCCAGAATCTTTCGGTGCTTGGCGTTGAGCTCCTTGGTGACGTTGGCCT
TCTCGTTCATGGTGACCGTACAACGAAATTGGCAGAGAGGAAGAAGAAGAAGAAGAGAAGGCAGCTGCAATGACGAAAGGTC
AAAATAGTCTTTTCGGGGGCTATACCTCTCTCTCTTCCGGAATCGTTCTCTCTCTCTCTGTCTCTGATTA


RU01402 Expression


Digital Expression:
ControlEthyleneWDSGenBankTotal
43108

Probe ID Probe Sequeces
yueji_13509ATTGAGAAAACCAGTCCACCAAATGTAGCAGAAGGCAGTAGCAAGTCTGCATCGAGGAAT bl2seq


RU01402 Annotation


GenBank top hits
 Blast detail
Accession No. Description Score e value
CAO39208 unnamed protein product [Vitis vinifera] 604 1e-060
NP_568807 AGD5 (ARF-GAP DOMAIN 5); DNA binding [Arabidopsis thaliana] 589 8e-059
NP_001059999 Os07g0563800 [Oryza sativa (japonica cultivar-group)] 589 8e-059
AAM67219 ARF GAP-like zinc finger-containing protein ZIGA3 [Arabidopsis thaliana] 589 8e-059
EAZ04350 hypothetical protein OsI_025582 [Oryza sativa (indica cultivar-group)] 589 8e-059

Swiss-Prot top hits
 Blast detail
Accession No. Description Score e value
Q9FL69 Probable ADP-ribosylation factor GTPase-activating protein AGD5 589 6e-060
Q0WQQ1 Probable ADP-ribosylation factor GTPase-activating protein AGD15 472 2e-046
Q91VZ6 Stromal membrane-associated protein 1 322 5e-029
Q8IYB5 Stromal membrane-associated protein 1 314 5e-028
Q5F413 Stromal membrane-associated protein 2 305 5e-027

TrEMBL top hits
 Blast detail
Accession No. Description Score e value
A7P1F8 Chromosome chr19 scaffold_4, whole genome shotgun sequence 604 1e-060
B9SYH5 Stromal membrane-associated protein, putative 600 4e-060
B9N583 Predicted protein 597 9e-060
B9I010 Predicted protein (Fragment) 596 1e-059
A2YMN9 Putative uncharacterized protein 589 7e-059

Arabidopsis top hits
 Blast detail
Accession No. Description Score e value
AT5G54310.1 AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding 589 6e-061
AT3G17660.1 AGD15 (ARF-GAP domain 15); ARF GTPase activator/ DNA binding / zinc ion binding 472 2e-047
AT4G05330.1 AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding 261 6e-023
AT5G13300.1 SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding 248 2e-021
AT1G60860.1 AGD2 (ARF-GAP DOMAIN 2); ARF GTPase activator/ protein binding / zinc ion binding 247 3e-021