RU01622 sequence (594 bp)


Member Information
TTTCTGCTCAGCTCCACCGAAGCACTCTCTCTCTCTCTCTCTCTCTCCCCTCTTTCTCTCGCCAATGGCTACAATACCAGTC
AACCCGAAACCTTTCTTGAACAATCTCACTGGGAAGACCGTGTTCGTGAAGCTTAAATGGGGAATGGAATACAAAGGTTTCC
TTGTCTCTGTGGATTCCTACATGAATTTGCAGTTGGCGAACACTGAAGAATATATTGATGGACAATGGACTGGAAATCTTGG
GGAGATTTTGATCAGGTGCAACAATGTTCTCTATCTTCGTGGGGTGCCTGAGGATGAAGAAATTGAAGATGCTGAACAGGAC
TGAGATGTTAACTTTGTAGGAGTGGCTTTGGTTCTAAAAACAGAAACTCAGTAAAAATCAGTATTTTGTATCTTTATTATCT
GTAGTGTATTTGAAGGTTCTATCTGATGTTTGATTGACAGGCCTGTGACATTTAAAAGGCTCTAATTGACAGATGACTCAAG
TTTGATGCTCTACAAGATTCTCTATTTTCCTAGTAGGCCAAATGGTTTGACAGGGGCAGCTTTCTAATTTTTAAGTGCACCA
AATTTGATAGCAAAAAAAAA


RU01622 Expression


Digital Expression:
ControlEthyleneWDSGenBankTotal
05207

Probe ID Probe Sequeces


RU01622 Annotation


GenBank top hits
 Blast detail
Accession No. Description Score e value
NP_194751 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] 433 3e-041
NP_001046068 Os02g0177500 [Oryza sativa (japonica cultivar-group)] 421 7e-040
NP_001068396 Os11g0657300 [Oryza sativa (japonica cultivar-group)] 421 7e-040
ACF82124 unknown [Zea mays] 415 3e-039
ACG39075 unknown [Zea mays] 414 4e-039

Swiss-Prot top hits
 Blast detail
Accession No. Description Score e value
Q9SUM2 Probable small nuclear ribonucleoprotein F 382 2e-036
Q3T0Z8 Small nuclear ribonucleoprotein F 329 3e-030
P62306 Small nuclear ribonucleoprotein F 329 3e-030
P62307 Small nuclear ribonucleoprotein F 329 3e-030
P62321 Small nuclear ribonucleoprotein F 329 3e-030

TrEMBL top hits
 Blast detail
Accession No. Description Score e value
B9ILY6 Predicted protein 387 6e-036
B9SXM7 Small nuclear ribonucleoprotein f, putative 384 1e-035
B8BLN4 Putative uncharacterized protein 382 2e-035
Q0WT08 SnRNP Sm protein F-like 382 2e-035
Q2R066 Os11g0657300 protein 382 2e-035

Arabidopsis top hits
 Blast detail
Accession No. Description Score e value
AT4G30220.1 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) 382 2e-037
AT2G14285.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 242 4e-021
AT2G43810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative 168 1e-012
AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative 168 1e-012
AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative 165 3e-012