Member Information |
| AGGTTTTTCTCTTCGAACCTCGAAAGCGCCCCTCATCTTTTCTGCTCAGCTCCACCGAAGCTCTCTCTCTCTCCTCTCTTTC TCTCGCCAATGGCTACAATACCAGTTAACCCGAAGCCTTTCTTGAACAATCTCACTGGGAAGACCGTGTTCGTGAAGCTTAA ATGGGGAATGGAATACAAAGGTTTCCTTGTCTCTGTGGATTCCTATATGAATTTGCAGTTGGCGAACACTGAAGAATATATT GATGGACAATTTACTGGAAATCTTGGGGAGATTTTGATCAGGTGCAACAATGTTCTCTATCTTCGTGGGGTGCCTGAGGATG AAGAAATTGAAGATGCTGAACAAGACTGAGATGTTAACTTTGTAGGAGTGGCTTTGGTTCTAAAAACAGAAACTCAGTAAAA ATCAGTATTTTGTATCTTTATTATCTGTAGTGTATTTGAAGGTTCTATCTGATGTTTGATTGACAGGCCTGTGACAAGTTTG ATGCTCTACAAGATTCTCTATTTTCCTAGTAGGCCAAATGGTTTGACAGGGGCAGCTTTCTAATTTTTAAGTGCACCAAATT TGAT |
Digital Expression: |
| Control | Ethylene | WDS | GenBank | Total |
|---|---|---|---|---|
| 2 | 3 | 0 | 1 | 6 |
| Probe ID | Probe Sequeces |
| yueji_06156 | GTGAGATTGTTCAAGAAAGGCTTCGGGTTAACTGGTATTGTAGCCATTGGCGAGAGAAAG bl2seq |
GenBank top hits |
Blast detail |
| Accession No. | Description | Score | e value |
|---|---|---|---|
| NP_194751 | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] | 435 | 2e-041 |
| NP_001046068 | Os02g0177500 [Oryza sativa (japonica cultivar-group)] | 426 | 2e-040 |
| NP_001068396 | Os11g0657300 [Oryza sativa (japonica cultivar-group)] | 426 | 2e-040 |
| ACF82124 | unknown [Zea mays] | 420 | 9e-040 |
| ACG39075 | unknown [Zea mays] | 419 | 1e-039 |
Swiss-Prot top hits |
Blast detail |
| Accession No. | Description | Score | e value |
|---|---|---|---|
| Q9SUM2 | Probable small nuclear ribonucleoprotein F | 384 | 1e-036 |
| Q3T0Z8 | Small nuclear ribonucleoprotein F | 331 | 2e-030 |
| P62306 | Small nuclear ribonucleoprotein F | 331 | 2e-030 |
| P62307 | Small nuclear ribonucleoprotein F | 331 | 2e-030 |
| P62321 | Small nuclear ribonucleoprotein F | 331 | 2e-030 |
TrEMBL top hits |
Blast detail |
| Accession No. | Description | Score | e value |
|---|---|---|---|
| B9ILY6 | Predicted protein | 392 | 1e-036 |
| B9SXM7 | Small nuclear ribonucleoprotein f, putative | 389 | 3e-036 |
| B8BLN4 | Putative uncharacterized protein | 387 | 5e-036 |
| Q2R066 | Os11g0657300 protein | 387 | 5e-036 |
| Q6ETN4 | Os02g0177500 protein | 387 | 5e-036 |
Arabidopsis top hits |
Blast detail |
| Accession No. | Description | Score | e value |
|---|---|---|---|
| AT4G30220.1 | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | 384 | 1e-037 |
| AT2G14285.1 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 244 | 2e-021 |
| AT2G43810.1 | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 170 | 8e-013 |
| AT2G43810.2 | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 170 | 8e-013 |
| AT3G59810.1 | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 167 | 2e-012 |
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